Wall clock time and date at job start Tue Mar 31 2020 13:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45193 * 109.47318 * 2 1 4 4 C 1.34645 * 117.00048 * 180.02562 * 3 2 1 5 5 O 1.21506 * 120.00037 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99895 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00156 * 179.97438 * 6 4 3 8 8 C 1.50696 * 109.47423 * 179.97438 * 7 6 4 9 9 O 1.21284 * 119.99703 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00179 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99873 * 0.02562 * 10 8 7 12 12 C 1.50708 * 109.46743 * 252.76447 * 11 10 8 13 13 H 1.08001 * 119.99844 * 234.30209 * 12 11 10 14 14 C 1.37876 * 119.99857 * 54.30418 * 12 11 10 15 15 N 1.31503 * 120.00098 * 4.82566 * 14 12 11 16 16 Si 1.86800 * 119.99570 * 184.82572 * 14 12 11 17 17 H 1.48501 * 109.47267 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47158 * 120.00104 * 16 14 12 19 19 H 1.48497 * 109.47203 * 240.00193 * 16 14 12 20 20 C 1.46500 * 120.00282 * 179.97438 * 10 8 7 21 21 C 1.50705 * 109.47133 * 274.73016 * 20 10 8 22 22 C 1.38671 * 120.41299 * 274.85581 * 21 20 10 23 23 C 1.38628 * 118.41528 * 179.78463 * 22 21 20 24 24 C 1.38227 * 119.16431 * 0.51289 * 23 22 21 25 25 N 1.31852 * 120.75775 * 359.73171 * 24 23 22 26 26 C 1.31884 * 121.73271 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46735 * 300.00066 * 1 2 3 29 29 H 1.09002 * 109.47080 * 60.00356 * 1 2 3 30 30 H 1.09009 * 109.47237 * 239.99924 * 2 1 3 31 31 H 1.09001 * 109.47160 * 120.00425 * 2 1 3 32 32 H 0.97001 * 119.99694 * 359.97438 * 6 4 3 33 33 H 1.09003 * 109.46776 * 59.99548 * 7 6 4 34 34 H 1.09000 * 109.46980 * 299.99886 * 7 6 4 35 35 H 1.08994 * 109.47536 * 132.76696 * 11 10 8 36 36 H 1.08999 * 109.47261 * 12.76082 * 11 10 8 37 37 H 0.97006 * 119.99967 * 174.99592 * 15 14 12 38 38 H 1.08998 * 109.46572 * 34.72570 * 20 10 8 39 39 H 1.08999 * 109.47206 * 154.72321 * 20 10 8 40 40 H 1.08000 * 120.79414 * 0.02770 * 22 21 20 41 41 H 1.07999 * 120.41804 * 180.22451 * 23 22 21 42 42 H 1.08002 * 119.62145 * 179.74416 * 24 23 22 43 43 H 1.08001 * 119.61994 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3489 1.5453 -0.0005 5 8 4.0890 0.5816 -0.0005 6 7 3.8640 2.7907 0.0000 7 6 5.3164 2.9827 -0.0001 8 6 5.6282 4.4570 -0.0001 9 8 4.7261 5.2676 -0.0006 10 7 6.9096 4.8748 -0.0006 11 6 7.9993 3.8956 -0.0018 12 6 8.6551 3.8723 1.3550 13 1 9.7214 4.0198 1.4419 14 6 7.8937 3.6628 2.4852 15 7 6.6123 3.3890 2.3733 16 14 8.6824 3.7678 4.1752 17 1 10.1255 4.0861 4.0292 18 1 8.0174 4.8341 4.9664 19 1 8.5314 2.4660 4.8737 20 6 7.2128 6.3080 -0.0012 21 6 7.2017 6.8233 -1.4174 22 6 8.3359 6.7246 -2.2092 23 6 8.2783 7.2078 -3.5073 24 6 7.1040 7.7776 -3.9625 25 7 6.0463 7.8591 -3.1794 26 6 6.0631 7.4048 -1.9414 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.2731 3.5599 0.0003 33 1 5.7438 2.5212 -0.8903 34 1 5.7439 2.5205 0.8897 35 1 8.7355 4.1720 -0.7564 36 1 7.5995 2.9073 -0.2290 37 1 6.0924 3.1702 3.1625 38 1 6.4618 6.8384 0.5842 39 1 8.1973 6.4713 0.4372 40 1 9.2413 6.2784 -1.8251 41 1 9.1414 7.1442 -4.1533 42 1 7.0522 8.1602 -4.9711 43 1 5.1768 7.4888 -1.3299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195027390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:27 Heat of formation + Delta-G solvation = -77.567770 kcal Electronic energy + Delta-G solvation = -27472.750917 eV Core-core repulsion = 23518.471211 eV Total energy + Delta-G solvation = -3954.279706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08605 -39.87747 -38.67309 -36.36904 -35.23347 -33.95603 -33.02700 -31.91734 -31.54128 -31.19161 -27.77420 -27.71538 -25.21845 -23.36378 -23.07456 -22.84630 -21.77541 -20.75457 -19.03575 -18.05388 -16.97607 -16.56027 -16.42352 -16.35878 -16.04846 -15.53504 -15.23726 -14.95860 -14.74200 -14.45727 -14.03745 -13.72290 -13.44310 -13.22338 -13.00748 -12.80732 -12.69724 -12.60345 -12.21194 -12.07021 -11.86901 -11.53570 -11.48292 -11.33796 -11.11899 -10.91721 -10.87266 -10.29227 -10.14420 -10.03274 -9.97402 -9.56320 -9.21154 -9.00280 -8.84577 -8.57810 -8.55213 -7.52255 -6.29513 -4.50459 1.36572 1.55162 2.56612 3.13046 3.24004 3.25197 3.33055 3.70319 3.95048 4.17888 4.35354 4.71684 4.72498 4.98986 5.01120 5.05922 5.06894 5.24793 5.28190 5.34971 5.38936 5.59425 5.63961 5.78099 5.79418 5.93802 5.99847 6.14490 6.18496 6.32328 6.40446 6.52431 6.62673 6.67534 6.82160 6.98089 7.00163 7.07235 7.45978 7.67241 7.88490 8.01525 8.24049 8.49415 8.61624 8.86305 9.17742 9.29450 10.66067 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008618 B = 0.004825 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3248.105733 B = 5802.264751 C = 8402.842435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.083 3.917 3 O -0.377 6.377 4 C 0.646 3.354 5 O -0.579 6.579 6 N -0.688 5.688 7 C 0.105 3.895 8 C 0.546 3.454 9 O -0.588 6.588 10 N -0.570 5.570 11 C 0.222 3.778 12 C -0.540 4.540 13 H 0.065 0.935 14 C 0.078 3.922 15 N -0.877 5.877 16 Si 0.901 3.099 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.281 1.281 20 C 0.168 3.832 21 C -0.141 4.141 22 C -0.064 4.064 23 C -0.181 4.181 24 C 0.085 3.915 25 N -0.492 5.492 26 C 0.119 3.881 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.409 0.591 33 H 0.069 0.931 34 H 0.167 0.833 35 H 0.027 0.973 36 H 0.046 0.954 37 H 0.270 0.730 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.148 0.852 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.068 0.652 -6.660 7.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.007 3.993 3 O -0.291 6.291 4 C 0.398 3.602 5 O -0.469 6.469 6 N -0.348 5.348 7 C -0.019 4.019 8 C 0.336 3.664 9 O -0.471 6.471 10 N -0.299 5.299 11 C 0.103 3.897 12 C -0.578 4.578 13 H 0.083 0.917 14 C -0.126 4.126 15 N -0.515 5.515 16 Si 0.729 3.271 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.207 1.207 20 C 0.043 3.957 21 C -0.144 4.144 22 C -0.090 4.090 23 C -0.201 4.201 24 C -0.072 4.072 25 N -0.201 5.201 26 C -0.038 4.038 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.246 0.754 33 H 0.087 0.913 34 H 0.183 0.817 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.165 0.835 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.085 0.936 -6.861 8.040 hybrid contribution 1.037 -0.232 1.302 1.680 sum -3.048 0.704 -5.560 6.379 Atomic orbital electron populations 1.21815 0.93004 1.02660 1.03426 1.22840 0.94409 0.79413 1.02589 1.86222 1.22808 1.32532 1.87567 1.17955 0.80677 0.84561 0.77041 1.90968 1.59604 1.39854 1.56464 1.44461 1.08715 1.05206 1.76415 1.22082 0.77397 0.95349 1.07121 1.19935 0.82684 0.89859 0.73951 1.90511 1.46154 1.56094 1.54371 1.48238 1.06251 1.05205 1.70248 1.19472 0.85674 0.88484 0.96066 1.21558 0.94567 1.50275 0.91405 0.91692 1.25007 0.94544 0.93276 0.99787 1.69384 1.06624 1.45215 1.30262 0.86391 0.79410 0.77976 0.83365 1.19666 1.20813 1.20724 1.19934 1.02784 0.83045 0.89910 1.21590 0.94501 0.98937 0.99421 1.21574 0.98470 0.95641 0.93337 1.22072 0.99718 1.01452 0.96863 1.22671 0.88910 0.96442 0.99178 1.67705 1.29565 1.17354 1.05441 1.22876 0.97458 0.92386 0.91129 0.90331 0.91542 0.91623 0.91465 0.91334 0.75414 0.91336 0.81674 0.95510 0.93632 0.91952 0.90339 0.89254 0.84813 0.85300 0.83457 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 37.16 0.38 -1.05 16 2 C 0.08 1.09 6.19 37.16 0.23 1.32 16 3 O -0.38 -6.37 10.27 -40.34 -0.41 -6.79 16 4 C 0.65 12.89 8.75 54.06 0.47 13.36 16 5 O -0.58 -12.97 16.13 -19.28 -0.31 -13.28 16 6 N -0.69 -13.82 5.53 -66.47 -0.37 -14.19 16 7 C 0.10 2.26 4.26 -5.20 -0.02 2.24 16 8 C 0.55 12.02 6.41 -10.99 -0.07 11.95 16 9 O -0.59 -13.49 14.77 5.55 0.08 -13.41 16 10 N -0.57 -11.85 2.11 -176.43 -0.37 -12.23 16 11 C 0.22 4.70 5.65 -5.19 -0.03 4.67 16 12 C -0.54 -12.53 9.11 -34.44 -0.31 -12.84 16 13 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 14 C 0.08 1.87 5.33 -17.82 -0.10 1.77 16 15 N -0.88 -21.67 8.26 55.43 0.46 -21.21 16 16 Si 0.90 19.30 29.54 -169.99 -5.02 14.28 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 C 0.17 3.11 5.43 -5.19 -0.03 3.08 16 21 C -0.14 -2.36 5.44 -104.48 -0.57 -2.93 16 22 C -0.06 -0.93 9.88 -39.28 -0.39 -1.32 16 23 C -0.18 -2.33 10.11 -39.44 -0.40 -2.73 16 24 C 0.09 1.17 11.18 -17.55 -0.20 0.98 16 25 N -0.49 -8.22 10.36 -13.25 -0.14 -8.36 16 26 C 0.12 2.06 10.67 -17.55 -0.19 1.87 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.41 7.94 7.55 -40.82 -0.31 7.64 16 33 H 0.07 1.44 7.55 -51.93 -0.39 1.05 16 34 H 0.17 4.00 4.96 -51.93 -0.26 3.74 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 1.01 5.92 -51.93 -0.31 0.70 16 37 H 0.27 6.66 8.32 -40.82 -0.34 6.32 16 38 H 0.08 1.53 7.49 -51.93 -0.39 1.14 16 39 H 0.09 1.60 7.79 -51.93 -0.40 1.19 16 40 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 41 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 43 H 0.16 2.84 7.68 -52.49 -0.40 2.43 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -28.43 365.09 -7.61 -36.04 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -5.81 Total: 13.26 kcal Atomic # 6 Polarization: 21.58 SS G_CDS: -1.21 Total: 20.37 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.42 Total: -55.98 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.64 Total: -33.48 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.43 -7.61 -36.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195027390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.530 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds