Wall clock time and date at job start Tue Mar 31 2020 13:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45193 * 109.47318 * 2 1 4 4 C 1.34645 * 117.00048 * 180.02562 * 3 2 1 5 5 O 1.21506 * 120.00037 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99895 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00156 * 179.97438 * 6 4 3 8 8 C 1.50696 * 109.47423 * 179.97438 * 7 6 4 9 9 O 1.21284 * 119.99703 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00179 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99873 * 0.02562 * 10 8 7 12 12 C 1.50708 * 109.46743 * 252.76447 * 11 10 8 13 13 H 1.08001 * 119.99844 * 234.30209 * 12 11 10 14 14 C 1.37876 * 119.99857 * 54.30418 * 12 11 10 15 15 N 1.31503 * 120.00098 * 4.82566 * 14 12 11 16 16 Si 1.86800 * 119.99570 * 184.82572 * 14 12 11 17 17 H 1.48501 * 109.47267 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47158 * 120.00104 * 16 14 12 19 19 H 1.48497 * 109.47203 * 240.00193 * 16 14 12 20 20 C 1.46500 * 120.00282 * 179.97438 * 10 8 7 21 21 C 1.50705 * 109.47133 * 274.73016 * 20 10 8 22 22 C 1.38671 * 120.41299 * 274.85581 * 21 20 10 23 23 C 1.38628 * 118.41528 * 179.78463 * 22 21 20 24 24 C 1.38227 * 119.16431 * 0.51289 * 23 22 21 25 25 N 1.31852 * 120.75775 * 359.73171 * 24 23 22 26 26 C 1.31884 * 121.73271 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46735 * 300.00066 * 1 2 3 29 29 H 1.09002 * 109.47080 * 60.00356 * 1 2 3 30 30 H 1.09009 * 109.47237 * 239.99924 * 2 1 3 31 31 H 1.09001 * 109.47160 * 120.00425 * 2 1 3 32 32 H 0.97001 * 119.99694 * 359.97438 * 6 4 3 33 33 H 1.09003 * 109.46776 * 59.99548 * 7 6 4 34 34 H 1.09000 * 109.46980 * 299.99886 * 7 6 4 35 35 H 1.08994 * 109.47536 * 132.76696 * 11 10 8 36 36 H 1.08999 * 109.47261 * 12.76082 * 11 10 8 37 37 H 0.97006 * 119.99967 * 174.99592 * 15 14 12 38 38 H 1.08998 * 109.46572 * 34.72570 * 20 10 8 39 39 H 1.08999 * 109.47206 * 154.72321 * 20 10 8 40 40 H 1.08000 * 120.79414 * 0.02770 * 22 21 20 41 41 H 1.07999 * 120.41804 * 180.22451 * 23 22 21 42 42 H 1.08002 * 119.62145 * 179.74416 * 24 23 22 43 43 H 1.08001 * 119.61994 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3489 1.5453 -0.0005 5 8 4.0890 0.5816 -0.0005 6 7 3.8640 2.7907 0.0000 7 6 5.3164 2.9827 -0.0001 8 6 5.6282 4.4570 -0.0001 9 8 4.7261 5.2676 -0.0006 10 7 6.9096 4.8748 -0.0006 11 6 7.9993 3.8956 -0.0018 12 6 8.6551 3.8723 1.3550 13 1 9.7214 4.0198 1.4419 14 6 7.8937 3.6628 2.4852 15 7 6.6123 3.3890 2.3733 16 14 8.6824 3.7678 4.1752 17 1 10.1255 4.0861 4.0292 18 1 8.0174 4.8341 4.9664 19 1 8.5314 2.4660 4.8737 20 6 7.2128 6.3080 -0.0012 21 6 7.2017 6.8233 -1.4174 22 6 8.3359 6.7246 -2.2092 23 6 8.2783 7.2078 -3.5073 24 6 7.1040 7.7776 -3.9625 25 7 6.0463 7.8591 -3.1794 26 6 6.0631 7.4048 -1.9414 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.2731 3.5599 0.0003 33 1 5.7438 2.5212 -0.8903 34 1 5.7439 2.5205 0.8897 35 1 8.7355 4.1720 -0.7564 36 1 7.5995 2.9073 -0.2290 37 1 6.0924 3.1702 3.1625 38 1 6.4618 6.8384 0.5842 39 1 8.1973 6.4713 0.4372 40 1 9.2413 6.2784 -1.8251 41 1 9.1414 7.1442 -4.1533 42 1 7.0522 8.1602 -4.9711 43 1 5.1768 7.4888 -1.3299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195027390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:26 Heat of formation + Delta-G solvation = -95.371515 kcal Electronic energy + Delta-G solvation = -27473.522945 eV Core-core repulsion = 23518.471211 eV Total energy + Delta-G solvation = -3955.051734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59481 -41.19002 -40.24301 -37.82460 -36.90965 -35.63384 -34.61727 -33.29759 -32.62247 -32.42256 -29.48331 -29.27521 -26.68984 -24.86504 -24.29661 -24.14817 -23.03677 -22.24035 -20.64685 -19.68278 -18.53612 -17.99535 -17.86033 -17.77075 -17.38426 -17.13237 -16.77499 -16.56953 -16.25462 -15.84128 -15.43941 -15.12071 -14.77710 -14.55242 -14.40635 -14.29140 -13.98246 -13.83590 -13.59853 -13.52348 -13.36156 -12.92659 -12.87804 -12.68692 -12.56863 -12.50652 -12.42545 -11.80726 -11.77430 -11.70596 -11.52180 -10.82538 -10.68352 -10.56891 -10.37991 -10.23560 -9.88716 -9.18993 -8.11236 -6.36645 0.19214 0.39587 1.12724 1.41181 1.48280 1.55280 1.73081 1.97542 2.40074 2.50813 3.00026 3.18617 3.33821 3.58794 3.88650 3.98556 4.03701 4.05797 4.12332 4.17284 4.19031 4.35949 4.41407 4.56020 4.74688 4.78603 4.85942 4.88172 4.93758 4.94392 5.07891 5.13907 5.21338 5.24875 5.30015 5.44259 5.46863 5.70627 5.84967 5.91653 6.10812 6.40758 6.69900 6.88000 7.07110 7.28300 7.37732 7.53981 8.80335 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008618 B = 0.004825 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3248.105733 B = 5802.264751 C = 8402.842435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 O -0.375 6.375 4 C 0.648 3.352 5 O -0.607 6.607 6 N -0.687 5.687 7 C 0.114 3.886 8 C 0.541 3.459 9 O -0.604 6.604 10 N -0.568 5.568 11 C 0.224 3.776 12 C -0.545 4.545 13 H 0.069 0.931 14 C 0.039 3.961 15 N -0.894 5.894 16 Si 0.952 3.048 17 H -0.263 1.263 18 H -0.291 1.291 19 H -0.287 1.287 20 C 0.172 3.828 21 C -0.153 4.153 22 C -0.066 4.066 23 C -0.166 4.166 24 C 0.083 3.917 25 N -0.515 5.515 26 C 0.101 3.899 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.412 0.588 33 H 0.070 0.930 34 H 0.145 0.855 35 H 0.051 0.949 36 H 0.033 0.967 37 H 0.262 0.738 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.150 0.850 41 H 0.171 0.829 42 H 0.183 0.817 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.136 0.798 -8.127 8.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.004 4.004 3 O -0.289 6.289 4 C 0.400 3.600 5 O -0.499 6.499 6 N -0.347 5.347 7 C -0.011 4.011 8 C 0.330 3.670 9 O -0.488 6.488 10 N -0.296 5.296 11 C 0.104 3.896 12 C -0.583 4.583 13 H 0.087 0.913 14 C -0.163 4.163 15 N -0.532 5.532 16 Si 0.779 3.221 17 H -0.187 1.187 18 H -0.218 1.218 19 H -0.213 1.213 20 C 0.048 3.952 21 C -0.156 4.156 22 C -0.092 4.092 23 C -0.186 4.186 24 C -0.074 4.074 25 N -0.225 5.225 26 C -0.055 4.055 27 H 0.127 0.873 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.249 0.751 33 H 0.088 0.912 34 H 0.162 0.838 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.168 0.832 41 H 0.188 0.812 42 H 0.200 0.800 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.155 1.092 -8.330 8.974 hybrid contribution 0.753 -0.281 1.666 1.850 sum -2.402 0.810 -6.663 7.129 Atomic orbital electron populations 1.21845 0.89739 1.04688 1.03691 1.23294 0.96874 0.77596 1.02658 1.86257 1.20679 1.34976 1.86982 1.18019 0.81557 0.83983 0.76397 1.90940 1.60611 1.40601 1.57722 1.44391 1.08287 1.05579 1.76417 1.21809 0.78200 0.95045 1.06079 1.20023 0.83041 0.89858 0.74057 1.90496 1.46614 1.56443 1.55248 1.48176 1.05718 1.06202 1.69523 1.19439 0.85977 0.88204 0.95971 1.21809 0.94770 1.49530 0.92187 0.91322 1.25580 0.94939 0.93516 1.02276 1.69545 1.07365 1.46181 1.30116 0.85600 0.79031 0.77092 0.80368 1.18724 1.21790 1.21320 1.19921 1.02305 0.81547 0.91414 1.21336 0.95516 1.00215 0.98574 1.21824 0.98048 0.95413 0.93943 1.22485 1.00593 0.99160 0.96317 1.23345 0.88396 0.95498 1.00154 1.67689 1.31321 1.18120 1.05325 1.22629 0.97249 0.93908 0.91755 0.87346 0.91444 0.91159 0.91164 0.91636 0.75100 0.91177 0.83797 0.93032 0.94845 0.92797 0.92212 0.88579 0.83187 0.81192 0.79963 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 10.29 71.98 0.74 -1.68 16 2 C 0.07 1.79 6.19 71.98 0.45 2.24 16 3 O -0.37 -12.66 10.27 -55.54 -0.57 -13.23 16 4 C 0.65 26.26 8.75 129.79 1.14 27.40 16 5 O -0.61 -27.67 16.13 19.82 0.32 -27.35 16 6 N -0.69 -28.29 5.53 -594.62 -3.29 -31.58 16 7 C 0.11 5.04 4.26 85.63 0.36 5.40 16 8 C 0.54 24.37 6.41 87.66 0.56 24.93 16 9 O -0.60 -28.59 14.77 -3.04 -0.04 -28.63 16 10 N -0.57 -23.76 2.11 -830.49 -1.75 -25.52 16 11 C 0.22 9.35 5.65 85.64 0.48 9.84 16 12 C -0.54 -24.93 9.11 25.60 0.23 -24.70 16 13 H 0.07 3.05 7.82 -2.91 -0.02 3.03 16 14 C 0.04 1.84 5.33 84.66 0.45 2.30 16 15 N -0.89 -45.02 8.26 21.45 0.18 -44.84 16 16 Si 0.95 39.70 29.54 68.60 2.03 41.73 16 17 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 18 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 20 C 0.17 6.42 5.43 85.63 0.46 6.89 16 21 C -0.15 -5.05 5.44 -19.77 -0.11 -5.16 16 22 C -0.07 -1.75 9.88 22.47 0.22 -1.53 16 23 C -0.17 -3.62 10.11 22.36 0.23 -3.40 16 24 C 0.08 2.04 11.18 84.69 0.95 2.99 16 25 N -0.52 -16.73 10.36 -195.85 -2.03 -18.76 16 26 C 0.10 3.54 10.67 84.67 0.90 4.45 16 27 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.75 8.14 -2.38 -0.02 1.74 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.41 16.43 7.55 -92.71 -0.70 15.73 16 33 H 0.07 3.03 7.55 -2.39 -0.02 3.01 16 34 H 0.15 7.20 4.96 -2.39 -0.01 7.19 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.03 1.48 5.92 -2.39 -0.01 1.47 16 37 H 0.26 13.29 8.32 -92.70 -0.77 12.52 16 38 H 0.06 2.42 7.49 -2.39 -0.02 2.41 16 39 H 0.10 3.39 7.79 -2.39 -0.02 3.37 16 40 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 41 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 42 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.14 5.25 7.68 -2.91 -0.02 5.23 16 Total: -1.00 -61.99 365.09 2.25 -59.74 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: 0.34 Total: 38.47 kcal Atomic # 6 Polarization: 42.89 SS G_CDS: 7.07 Total: 49.96 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -6.89 Total: -120.69 kcal Atomic # 8 Polarization: -68.92 SS G_CDS: -0.30 Total: -69.21 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -61.99 2.25 -59.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195027390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.631 kcal (2) G-P(sol) polarization free energy of solvation -61.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds