Wall clock time and date at job start Tue Mar 31 2020 13:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21273 * 120.00055 * 2 1 4 4 N 1.34776 * 119.99810 * 179.97438 * 2 1 3 5 5 C 1.46506 * 120.00161 * 5.17233 * 4 2 1 6 6 C 1.46499 * 119.99995 * 185.16923 * 4 2 1 7 7 C 1.50700 * 109.47195 * 270.00339 * 6 4 2 8 8 O 1.21283 * 120.00211 * 359.97438 * 7 6 4 9 9 N 1.34780 * 119.99832 * 180.02562 * 7 6 4 10 10 C 1.39586 * 119.99626 * 180.02562 * 9 7 6 11 11 N 1.32272 * 119.72900 * 0.26268 * 10 9 7 12 12 C 1.31954 * 121.68910 * 180.30973 * 11 10 9 13 13 C 1.38088 * 120.95368 * 359.70878 * 12 11 10 14 14 C 1.38772 * 119.35704 * 359.97438 * 13 12 11 15 15 C 1.38802 * 118.44337 * 0.02562 * 14 13 12 16 16 O 1.35978 * 120.49222 * 180.02562 * 15 14 13 17 17 C 1.42896 * 117.00413 * 359.97438 * 16 15 14 18 18 C 1.53003 * 109.47477 * 179.97438 * 17 16 15 19 19 C 1.50695 * 109.47031 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00179 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99914 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99594 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 119.99959 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47291 * 90.00552 * 23 21 19 25 25 H 1.48506 * 109.47024 * 209.99906 * 23 21 19 26 26 H 1.48497 * 109.47538 * 329.99769 * 23 21 19 27 27 H 1.08994 * 109.47248 * 185.32203 * 1 2 3 28 28 H 1.09005 * 109.47144 * 305.32091 * 1 2 3 29 29 H 1.09000 * 109.46999 * 65.32022 * 1 2 3 30 30 H 1.09000 * 109.47056 * 275.19425 * 5 4 2 31 31 H 1.09010 * 109.46708 * 35.19310 * 5 4 2 32 32 H 1.08997 * 109.47132 * 155.19114 * 5 4 2 33 33 H 1.09005 * 109.46818 * 150.00423 * 6 4 2 34 34 H 1.09002 * 109.47042 * 30.00438 * 6 4 2 35 35 H 0.96995 * 120.00036 * 359.97438 * 9 7 6 36 36 H 1.07999 * 119.52264 * 179.72465 * 12 11 10 37 37 H 1.08004 * 120.31835 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.77845 * 180.02562 * 14 13 12 39 39 H 1.08999 * 109.47028 * 59.99732 * 17 16 15 40 40 H 1.08997 * 109.47503 * 300.00313 * 17 16 15 41 41 H 1.08997 * 109.47072 * 300.00653 * 18 17 16 42 42 H 1.09005 * 109.46615 * 60.00315 * 18 17 16 43 43 H 0.97007 * 119.99689 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4528 -2.4335 -0.1133 6 6 3.6414 -1.1698 0.1148 7 6 4.2531 -1.1072 -1.2610 8 8 3.5393 -1.0651 -2.2407 9 7 5.5934 -1.0991 -1.4029 10 6 6.1599 -1.0406 -2.6773 11 7 5.3763 -0.9881 -3.7416 12 6 5.8703 -0.9379 -4.9642 13 6 7.2343 -0.9323 -5.1795 14 6 8.0949 -0.9797 -4.0919 15 6 7.5474 -1.0320 -2.8174 16 8 8.3520 -1.0791 -1.7223 17 6 9.7623 -1.0725 -1.9525 18 6 10.4982 -1.1289 -0.6122 19 6 11.9854 -1.1213 -0.8551 20 1 12.3676 -1.0807 -1.8644 21 6 12.8583 -1.1673 0.2113 22 7 12.3929 -1.2182 1.4402 23 14 14.7018 -1.1586 -0.0898 24 1 15.1932 0.2426 -0.1115 25 1 15.3844 -1.9056 0.9971 26 1 14.9935 -1.8058 -1.3941 27 1 -0.3633 -1.0232 0.0953 28 1 -0.3634 0.5942 0.8385 29 1 -0.3633 0.4291 -0.9338 30 1 1.1119 -2.7465 0.8736 31 1 0.5926 -2.3002 -0.7695 32 1 2.1121 -3.1956 -0.5287 33 1 3.9650 -2.0825 0.6152 34 1 3.9620 -0.3043 0.6947 35 1 6.1642 -1.1331 -0.6194 36 1 5.1981 -0.9004 -5.8087 37 1 7.6274 -0.8914 -6.1846 38 1 9.1655 -0.9761 -4.2337 39 1 10.0399 -0.1604 -2.4808 40 1 10.0363 -1.9387 -2.5546 41 1 10.2242 -0.2624 -0.0105 42 1 10.2206 -2.0409 -0.0836 43 1 13.0070 -1.2509 2.1904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263809334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:31 Heat of formation + Delta-G solvation = -56.318595 kcal Electronic energy + Delta-G solvation = -26385.305432 eV Core-core repulsion = 22431.947159 eV Total energy + Delta-G solvation = -3953.358273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94847 -40.14931 -38.83268 -37.74629 -35.70425 -34.73349 -33.47707 -31.74437 -31.14579 -30.48178 -29.24919 -28.05727 -26.33653 -25.41065 -23.60308 -22.79042 -21.24663 -20.48321 -19.52136 -18.36187 -17.59538 -17.42018 -17.21482 -16.32200 -16.15490 -16.00239 -15.77946 -15.26918 -15.01243 -14.80239 -14.57163 -14.02298 -13.85257 -13.67637 -13.55053 -13.34325 -13.11891 -12.83521 -12.53922 -12.41001 -12.31993 -12.02723 -12.00214 -11.88980 -11.07137 -10.99571 -10.69448 -10.68546 -10.38406 -10.08294 -10.05083 -9.78734 -9.43413 -9.27925 -9.21336 -8.78777 -8.52574 -7.66002 -6.18343 -4.23194 1.21047 1.45386 2.30747 2.60597 2.69800 3.08935 3.22497 3.28562 3.30724 3.53011 4.01282 4.33508 4.35197 4.38567 4.74747 4.80108 4.82231 4.95366 4.96119 5.05753 5.11059 5.14333 5.18634 5.25358 5.29417 5.35876 5.46714 5.56111 5.85587 5.89884 6.01077 6.07063 6.18939 6.35460 6.53906 6.63214 7.05187 7.25406 7.34435 7.52404 7.63634 7.84707 7.92295 8.06951 8.14137 8.35521 8.81993 9.41733 10.93109 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.002659 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.304669 B =10529.546948 C =11974.896040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.517 3.483 3 O -0.540 6.540 4 N -0.603 5.603 5 C 0.082 3.918 6 C 0.097 3.903 7 C 0.488 3.512 8 O -0.472 6.472 9 N -0.651 5.651 10 C 0.329 3.671 11 N -0.444 5.444 12 C 0.074 3.926 13 C -0.160 4.160 14 C -0.148 4.148 15 C 0.068 3.932 16 O -0.316 6.316 17 C 0.066 3.934 18 C 0.027 3.973 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.424 0.576 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.937 -3.436 -4.789 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.306 3.694 3 O -0.416 6.416 4 N -0.336 5.336 5 C -0.061 4.061 6 C -0.030 4.030 7 C 0.272 3.728 8 O -0.341 6.341 9 N -0.300 5.300 10 C 0.097 3.903 11 N -0.159 5.159 12 C -0.082 4.082 13 C -0.181 4.181 14 C -0.175 4.175 15 C 0.016 3.984 16 O -0.228 6.228 17 C -0.008 4.008 18 C -0.010 4.010 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.262 0.738 36 H 0.173 0.827 37 H 0.152 0.848 38 H 0.163 0.837 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.118 -2.871 -4.898 22.835 hybrid contribution 2.572 -0.108 -0.124 2.577 sum -19.546 -2.979 -5.022 20.399 Atomic orbital electron populations 1.21936 0.91389 1.04555 1.05304 1.20852 0.90776 0.82879 0.74912 1.90742 1.70619 1.31118 1.49110 1.47486 1.05321 1.07247 1.73573 1.21841 0.97637 0.85026 1.01552 1.21308 0.81278 1.06048 0.94377 1.21358 0.81818 0.77092 0.92537 1.90776 1.59868 1.43713 1.39744 1.43466 1.07726 1.72202 1.06637 1.17807 0.85290 1.00725 0.86524 1.67613 1.37059 1.13442 0.97823 1.22399 0.93313 0.99134 0.93380 1.21887 0.94242 1.02513 0.99483 1.21609 1.01513 1.03250 0.91108 1.19597 0.89874 1.00510 0.88404 1.86096 1.20379 1.87475 1.28868 1.23395 0.74328 0.99838 1.03225 1.19126 0.93646 0.98878 0.89395 1.20945 0.90152 1.52407 0.93146 0.92347 1.24980 0.99335 0.94796 0.94999 1.69963 1.35109 1.49425 0.98170 0.86482 0.84630 0.78242 0.78016 1.20450 1.21010 1.19756 0.90076 0.88728 0.88658 0.92126 0.90680 0.90687 0.86932 0.86552 0.73794 0.82705 0.84799 0.83727 0.92953 0.92951 0.95319 0.95343 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.90 36.01 0.36 -0.86 16 2 C 0.52 6.13 7.77 -10.98 -0.09 6.04 16 3 O -0.54 -8.95 16.73 5.56 0.09 -8.86 16 4 N -0.60 -6.10 2.36 -182.95 -0.43 -6.53 16 5 C 0.08 0.51 9.66 59.85 0.58 1.09 16 6 C 0.10 1.02 5.82 -5.19 -0.03 0.99 16 7 C 0.49 7.12 7.86 -10.98 -0.09 7.03 16 8 O -0.47 -8.48 14.68 5.55 0.08 -8.40 16 9 N -0.65 -9.67 5.39 -11.29 -0.06 -9.73 16 10 C 0.33 5.60 7.45 -154.43 -1.15 4.45 16 11 N -0.44 -7.67 7.88 -12.22 -0.10 -7.76 16 12 C 0.07 1.05 11.17 -17.55 -0.20 0.85 16 13 C -0.16 -2.05 10.10 -39.44 -0.40 -2.45 16 14 C -0.15 -2.20 9.14 -39.18 -0.36 -2.56 16 15 C 0.07 1.15 6.72 -38.92 -0.26 0.88 16 16 O -0.32 -5.84 9.38 -19.67 -0.18 -6.02 16 17 C 0.07 1.31 4.70 37.16 0.17 1.48 16 18 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 19 C -0.53 -14.11 9.11 -34.44 -0.31 -14.43 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 23 Si 0.90 20.69 29.54 -169.99 -5.02 15.66 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H 0.08 0.35 5.81 -51.93 -0.30 0.05 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.40 6.63 -51.92 -0.34 0.06 16 32 H 0.07 0.48 8.03 -51.93 -0.42 0.06 16 33 H 0.11 0.77 8.07 -51.93 -0.42 0.36 16 34 H 0.12 1.25 7.50 -51.93 -0.39 0.86 16 35 H 0.42 5.47 8.04 -40.82 -0.33 5.14 16 36 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.15 1.98 6.44 -52.49 -0.34 1.65 16 39 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 40 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -36.63 369.57 -7.17 -43.80 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.84 Total: 2.47 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.02 Total: 4.61 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.15 Total: -48.82 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.01 Total: -23.28 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.63 -7.17 -43.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263809334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.522 kcal (2) G-P(sol) polarization free energy of solvation -36.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds