Wall clock time and date at job start Tue Mar 31 2020 13:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21273 * 120.00055 * 2 1 4 4 N 1.34776 * 119.99810 * 179.97438 * 2 1 3 5 5 C 1.46506 * 120.00161 * 5.17233 * 4 2 1 6 6 C 1.46499 * 119.99995 * 185.16923 * 4 2 1 7 7 C 1.50700 * 109.47195 * 270.00339 * 6 4 2 8 8 O 1.21283 * 120.00211 * 359.97438 * 7 6 4 9 9 N 1.34780 * 119.99832 * 180.02562 * 7 6 4 10 10 C 1.39586 * 119.99626 * 180.02562 * 9 7 6 11 11 N 1.32272 * 119.72900 * 0.26268 * 10 9 7 12 12 C 1.31954 * 121.68910 * 180.30973 * 11 10 9 13 13 C 1.38088 * 120.95368 * 359.70878 * 12 11 10 14 14 C 1.38772 * 119.35704 * 359.97438 * 13 12 11 15 15 C 1.38802 * 118.44337 * 0.02562 * 14 13 12 16 16 O 1.35978 * 120.49222 * 180.02562 * 15 14 13 17 17 C 1.42896 * 117.00413 * 359.97438 * 16 15 14 18 18 C 1.53003 * 109.47477 * 179.97438 * 17 16 15 19 19 C 1.50695 * 109.47031 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00179 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99914 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99594 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 119.99959 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47291 * 90.00552 * 23 21 19 25 25 H 1.48506 * 109.47024 * 209.99906 * 23 21 19 26 26 H 1.48497 * 109.47538 * 329.99769 * 23 21 19 27 27 H 1.08994 * 109.47248 * 185.32203 * 1 2 3 28 28 H 1.09005 * 109.47144 * 305.32091 * 1 2 3 29 29 H 1.09000 * 109.46999 * 65.32022 * 1 2 3 30 30 H 1.09000 * 109.47056 * 275.19425 * 5 4 2 31 31 H 1.09010 * 109.46708 * 35.19310 * 5 4 2 32 32 H 1.08997 * 109.47132 * 155.19114 * 5 4 2 33 33 H 1.09005 * 109.46818 * 150.00423 * 6 4 2 34 34 H 1.09002 * 109.47042 * 30.00438 * 6 4 2 35 35 H 0.96995 * 120.00036 * 359.97438 * 9 7 6 36 36 H 1.07999 * 119.52264 * 179.72465 * 12 11 10 37 37 H 1.08004 * 120.31835 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.77845 * 180.02562 * 14 13 12 39 39 H 1.08999 * 109.47028 * 59.99732 * 17 16 15 40 40 H 1.08997 * 109.47503 * 300.00313 * 17 16 15 41 41 H 1.08997 * 109.47072 * 300.00653 * 18 17 16 42 42 H 1.09005 * 109.46615 * 60.00315 * 18 17 16 43 43 H 0.97007 * 119.99689 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4528 -2.4335 -0.1133 6 6 3.6414 -1.1698 0.1148 7 6 4.2531 -1.1072 -1.2610 8 8 3.5393 -1.0651 -2.2407 9 7 5.5934 -1.0991 -1.4029 10 6 6.1599 -1.0406 -2.6773 11 7 5.3763 -0.9881 -3.7416 12 6 5.8703 -0.9379 -4.9642 13 6 7.2343 -0.9323 -5.1795 14 6 8.0949 -0.9797 -4.0919 15 6 7.5474 -1.0320 -2.8174 16 8 8.3520 -1.0791 -1.7223 17 6 9.7623 -1.0725 -1.9525 18 6 10.4982 -1.1289 -0.6122 19 6 11.9854 -1.1213 -0.8551 20 1 12.3676 -1.0807 -1.8644 21 6 12.8583 -1.1673 0.2113 22 7 12.3929 -1.2182 1.4402 23 14 14.7018 -1.1586 -0.0898 24 1 15.1932 0.2426 -0.1115 25 1 15.3844 -1.9056 0.9971 26 1 14.9935 -1.8058 -1.3941 27 1 -0.3633 -1.0232 0.0953 28 1 -0.3634 0.5942 0.8385 29 1 -0.3633 0.4291 -0.9338 30 1 1.1119 -2.7465 0.8736 31 1 0.5926 -2.3002 -0.7695 32 1 2.1121 -3.1956 -0.5287 33 1 3.9650 -2.0825 0.6152 34 1 3.9620 -0.3043 0.6947 35 1 6.1642 -1.1331 -0.6194 36 1 5.1981 -0.9004 -5.8087 37 1 7.6274 -0.8914 -6.1846 38 1 9.1655 -0.9761 -4.2337 39 1 10.0399 -0.1604 -2.4808 40 1 10.0363 -1.9387 -2.5546 41 1 10.2242 -0.2624 -0.0105 42 1 10.2206 -2.0409 -0.0836 43 1 13.0070 -1.2509 2.1904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263809334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:31 Heat of formation + Delta-G solvation = -81.520698 kcal Electronic energy + Delta-G solvation = -26386.398277 eV Core-core repulsion = 22431.947159 eV Total energy + Delta-G solvation = -3954.451118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.11223 -41.14329 -39.98633 -39.07043 -36.60354 -35.92790 -35.44633 -32.96135 -32.44956 -31.71910 -30.44983 -28.81468 -27.18838 -27.06565 -24.97501 -23.99819 -22.83075 -21.70960 -20.43444 -19.59840 -18.92874 -18.52677 -18.10626 -18.00582 -17.21667 -17.18799 -17.08830 -16.51397 -16.23475 -16.21181 -15.84967 -15.22551 -14.93901 -14.89923 -14.40750 -14.34280 -14.16876 -13.94218 -13.67668 -13.67231 -13.32214 -13.27269 -13.02798 -12.81409 -12.75318 -12.61632 -12.44794 -11.88688 -11.72153 -11.64741 -11.52831 -11.40377 -11.01545 -10.61121 -10.43326 -10.36543 -9.73543 -8.88679 -8.25924 -6.38356 0.05893 0.26331 1.38929 1.42421 1.43363 1.54229 1.59336 1.77510 2.09619 2.15747 2.43957 2.84711 3.09443 3.33978 3.65162 3.68511 3.83486 4.02009 4.12122 4.13761 4.25701 4.28576 4.31141 4.32251 4.44252 4.45302 4.62029 4.73882 4.75660 4.89438 4.93584 5.07099 5.10663 5.22939 5.29272 5.30808 5.50257 5.51715 5.72982 6.07605 6.15633 6.29392 6.31569 6.76471 6.88639 7.08573 7.22645 7.31626 8.86745 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.002659 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.304669 B =10529.546948 C =11974.896040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.503 3.497 3 O -0.601 6.601 4 N -0.602 5.602 5 C 0.075 3.925 6 C 0.098 3.902 7 C 0.485 3.515 8 O -0.511 6.511 9 N -0.652 5.652 10 C 0.310 3.690 11 N -0.475 5.475 12 C 0.072 3.928 13 C -0.145 4.145 14 C -0.149 4.149 15 C 0.042 3.958 16 O -0.328 6.328 17 C 0.083 3.917 18 C 0.030 3.970 19 C -0.545 4.545 20 H 0.071 0.929 21 C 0.004 3.996 22 N -0.929 5.929 23 Si 0.970 3.030 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.259 1.259 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.111 0.889 35 H 0.429 0.571 36 H 0.185 0.815 37 H 0.176 0.824 38 H 0.158 0.842 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.000 1.000 42 H 0.004 0.996 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.054 -4.407 -6.399 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.294 3.706 3 O -0.482 6.482 4 N -0.334 5.334 5 C -0.066 4.066 6 C -0.029 4.029 7 C 0.271 3.729 8 O -0.382 6.382 9 N -0.301 5.301 10 C 0.078 3.922 11 N -0.191 5.191 12 C -0.085 4.085 13 C -0.165 4.165 14 C -0.176 4.176 15 C -0.009 4.009 16 O -0.241 6.241 17 C 0.009 3.991 18 C -0.007 4.007 19 C -0.582 4.582 20 H 0.089 0.911 21 C -0.195 4.195 22 N -0.568 5.568 23 Si 0.794 3.206 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.183 1.183 27 H 0.131 0.869 28 H 0.124 0.876 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.169 0.831 34 H 0.129 0.871 35 H 0.268 0.732 36 H 0.202 0.798 37 H 0.194 0.806 38 H 0.175 0.825 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.019 0.981 42 H 0.022 0.978 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.256 -3.886 -6.505 23.511 hybrid contribution 2.520 0.165 0.283 2.541 sum -19.736 -3.722 -6.222 21.026 Atomic orbital electron populations 1.21972 0.87709 1.06906 1.05770 1.21788 0.92708 0.82403 0.73685 1.90705 1.72117 1.33268 1.52076 1.47728 1.05195 1.08297 1.72223 1.22128 0.97618 0.83111 1.03746 1.21429 0.81837 1.07651 0.91961 1.22107 0.81415 0.75729 0.93674 1.90735 1.60523 1.45640 1.41329 1.43590 1.08136 1.71897 1.06468 1.18044 0.85537 1.01400 0.87249 1.67667 1.37944 1.14531 0.98925 1.23045 0.94710 0.97562 0.93195 1.22278 0.93348 1.00116 1.00777 1.21915 1.02538 1.02309 0.90790 1.19749 0.89681 1.02689 0.88748 1.86024 1.19639 1.88384 1.30084 1.22961 0.75017 1.00861 1.00240 1.18946 0.93964 0.96323 0.91499 1.21398 0.91236 1.51828 0.93779 0.91122 1.25961 1.04515 0.94324 0.94699 1.70099 1.36915 1.50595 0.99202 0.85363 0.78397 0.78457 0.78340 1.19829 1.20842 1.18329 0.86885 0.87608 0.88590 0.88984 0.89517 0.90821 0.83062 0.87146 0.73215 0.79819 0.80638 0.82468 0.91983 0.91647 0.98124 0.97791 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.90 71.24 0.70 -1.39 16 2 C 0.50 11.95 7.77 87.66 0.68 12.63 16 3 O -0.60 -20.89 16.73 -3.01 -0.05 -20.94 16 4 N -0.60 -11.79 2.36 -851.11 -2.01 -13.80 16 5 C 0.08 0.78 9.66 127.77 1.23 2.02 16 6 C 0.10 2.07 5.82 85.63 0.50 2.57 16 7 C 0.48 14.55 7.86 87.66 0.69 15.24 16 8 O -0.51 -18.82 14.68 -3.04 -0.04 -18.87 16 9 N -0.65 -20.08 5.39 -308.02 -1.66 -21.74 16 10 C 0.31 10.68 7.45 132.98 0.99 11.67 16 11 N -0.48 -16.32 7.88 -192.59 -1.52 -17.83 16 12 C 0.07 1.88 11.17 84.64 0.95 2.82 16 13 C -0.14 -3.28 10.10 22.36 0.23 -3.05 16 14 C -0.15 -4.16 9.14 22.53 0.21 -3.95 16 15 C 0.04 1.42 6.72 22.70 0.15 1.57 16 16 O -0.33 -12.37 9.38 -93.30 -0.88 -13.24 16 17 C 0.08 3.30 4.70 71.98 0.34 3.63 16 18 C 0.03 1.52 5.34 29.85 0.16 1.68 16 19 C -0.54 -29.16 9.11 25.60 0.23 -28.93 16 20 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 21 C 0.00 0.21 5.46 84.66 0.46 0.67 16 22 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 23 Si 0.97 42.10 29.54 68.60 2.03 44.12 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 27 H 0.11 0.66 5.81 -2.39 -0.01 0.64 16 28 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.09 0.71 6.63 -2.38 -0.02 0.70 16 32 H 0.07 0.82 8.03 -2.39 -0.02 0.80 16 33 H 0.15 1.91 8.07 -2.38 -0.02 1.89 16 34 H 0.11 2.49 7.50 -2.39 -0.02 2.47 16 35 H 0.43 11.73 8.04 -92.71 -0.75 10.98 16 36 H 0.18 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.16 3.93 6.44 -2.91 -0.02 3.91 16 39 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 40 H 0.07 2.39 7.70 -2.39 -0.02 2.37 16 41 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 43 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -83.01 369.57 3.97 -79.04 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.30 Total: 20.26 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 7.52 Total: 17.18 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -4.90 Total: -107.56 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -0.97 Total: -53.05 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -83.01 3.97 -79.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263809334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.477 kcal (2) G-P(sol) polarization free energy of solvation -83.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds