Wall clock time and date at job start Tue Mar 31 2020 13:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34637 * 117.00450 * 2 1 4 4 O 1.21507 * 119.99990 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99949 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00173 * 0.02562 * 5 3 2 7 7 C 1.46496 * 119.99934 * 179.97438 * 5 3 2 8 8 C 1.50698 * 109.47543 * 270.00564 * 7 5 3 9 9 O 1.21287 * 119.99499 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00377 * 180.02562 * 8 7 5 11 11 C 1.46497 * 119.99928 * 359.97438 * 10 8 7 12 12 C 1.50698 * 109.46886 * 270.00390 * 11 10 8 13 13 H 1.07994 * 120.00600 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99702 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00037 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00030 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46873 * 90.00281 * 16 14 12 18 18 H 1.48504 * 109.47057 * 210.00010 * 16 14 12 19 19 H 1.48496 * 109.47551 * 330.00287 * 16 14 12 20 20 C 1.46504 * 119.99689 * 179.97438 * 10 8 7 21 21 C 1.50707 * 109.46935 * 90.00167 * 20 10 8 22 22 C 1.38227 * 119.62059 * 95.01845 * 21 20 10 23 23 C 1.38627 * 119.15702 * 179.74122 * 22 21 20 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61137 * 274.99275 * 21 20 10 27 27 H 1.08997 * 109.47334 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47021 * 300.00287 * 1 2 3 29 29 H 1.09000 * 109.46322 * 60.00072 * 1 2 3 30 30 H 1.08999 * 109.46927 * 269.99490 * 6 5 3 31 31 H 1.09003 * 109.47576 * 29.99433 * 6 5 3 32 32 H 1.08997 * 109.47719 * 149.99788 * 6 5 3 33 33 H 1.08996 * 109.47340 * 150.00171 * 7 5 3 34 34 H 1.09001 * 109.47110 * 30.00045 * 7 5 3 35 35 H 1.08998 * 109.47243 * 30.00215 * 11 10 8 36 36 H 1.08997 * 109.46980 * 150.00484 * 11 10 8 37 37 H 0.97000 * 120.00213 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47679 * 329.99634 * 20 10 8 39 39 H 1.09003 * 109.46652 * 209.99594 * 20 10 8 40 40 H 1.07998 * 120.41916 * 359.95342 * 22 21 20 41 41 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 42 42 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 43 43 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1996 0.0000 4 8 1.4017 2.2187 -0.0005 5 7 3.4093 1.2700 0.0005 6 6 4.2071 0.0413 0.0005 7 6 4.0744 2.5752 0.0000 8 6 4.3030 3.0220 -1.4210 9 8 3.9459 2.3190 -2.3426 10 7 4.9052 4.2023 -1.6678 11 6 5.3371 5.0511 -0.5546 12 6 4.2195 5.9876 -0.1741 13 1 3.2815 5.9542 -0.7083 14 6 4.3945 6.8872 0.8560 15 7 5.5369 6.9282 1.5062 16 14 3.0094 8.0486 1.3273 17 1 2.1575 7.4089 2.3619 18 1 3.5816 9.3083 1.8668 19 1 2.1879 8.3519 0.1279 20 6 5.1279 4.6362 -3.0492 21 6 3.9385 5.4306 -3.5241 22 6 3.9582 6.8098 -3.4343 23 6 2.8612 7.5313 -3.8789 24 6 1.7764 6.8351 -4.3903 25 6 1.8289 5.4555 -4.4490 26 7 2.8914 4.8019 -4.0209 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 4.4046 -0.2636 1.0282 31 1 3.6587 -0.7481 -0.5136 32 1 5.1515 0.2213 -0.5129 33 1 5.0321 2.4952 0.5142 34 1 3.4462 3.3034 0.5131 35 1 5.5943 4.4260 0.3005 36 1 6.2096 5.6304 -0.8567 37 1 5.6602 7.5613 2.2307 38 1 5.2599 3.7627 -3.6878 39 1 6.0220 5.2581 -3.0950 40 1 4.8187 7.3190 -3.0261 41 1 2.8500 8.6100 -3.8245 42 1 0.9035 7.3646 -4.7425 43 1 0.9899 4.9060 -4.8497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264029082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:42 Heat of formation + Delta-G solvation = -61.418499 kcal Electronic energy + Delta-G solvation = -28219.910809 eV Core-core repulsion = 24266.331388 eV Total energy + Delta-G solvation = -3953.579421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.30785 -39.76200 -38.70119 -36.43447 -35.28461 -34.85360 -32.77551 -31.93455 -31.32669 -28.92732 -27.63692 -27.45124 -26.20768 -25.07314 -23.10715 -22.79219 -21.79857 -20.55916 -18.55996 -17.74643 -16.88815 -16.80080 -16.60219 -16.32508 -15.95674 -15.65374 -15.26499 -15.05575 -14.43780 -14.27063 -14.16630 -13.72473 -13.60839 -13.10690 -12.89171 -12.64540 -12.59851 -12.48288 -12.23591 -12.18427 -11.88232 -11.68531 -11.41124 -11.37289 -11.14288 -10.92672 -10.75502 -10.55033 -10.22097 -10.16602 -9.76800 -9.42141 -9.32756 -8.90495 -8.60557 -8.57155 -8.24286 -7.74648 -6.19004 -4.24415 1.57479 1.81559 2.37349 3.15343 3.24200 3.31261 3.35162 3.43778 3.89900 4.20737 4.34103 4.50763 4.81599 5.14484 5.21090 5.24449 5.25248 5.33016 5.33800 5.38093 5.49563 5.51437 5.59014 5.63929 5.69782 5.88727 5.91436 6.00250 6.09002 6.20951 6.25836 6.46673 6.55593 6.60602 6.66398 6.69137 7.08795 7.19251 7.49463 7.57726 7.77931 8.04176 8.28443 8.57754 8.59494 8.81867 9.03948 9.43998 10.87580 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009559 B = 0.005559 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.331594 B = 5036.064653 C = 6080.672573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.373 6.373 3 C 0.651 3.349 4 O -0.562 6.562 5 N -0.580 5.580 6 C 0.091 3.909 7 C 0.118 3.882 8 C 0.503 3.497 9 O -0.544 6.544 10 N -0.592 5.592 11 C 0.235 3.765 12 C -0.529 4.529 13 H 0.060 0.940 14 C 0.068 3.932 15 N -0.892 5.892 16 Si 0.890 3.110 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.173 3.827 21 C 0.123 3.877 22 C -0.132 4.132 23 C -0.084 4.084 24 C -0.181 4.181 25 C 0.088 3.912 26 N -0.459 5.459 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.264 0.736 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 -7.537 -5.027 9.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.287 6.287 3 C 0.405 3.595 4 O -0.449 6.449 5 N -0.319 5.319 6 C -0.052 4.052 7 C -0.007 4.007 8 C 0.289 3.711 9 O -0.422 6.422 10 N -0.325 5.325 11 C 0.116 3.884 12 C -0.568 4.568 13 H 0.079 0.921 14 C -0.134 4.134 15 N -0.531 5.531 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 C 0.049 3.951 21 C -0.016 4.016 22 C -0.153 4.153 23 C -0.111 4.111 24 C -0.201 4.201 25 C -0.070 4.070 26 N -0.168 5.168 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.145 0.855 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.154 0.846 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.596 -8.452 -5.385 10.352 hybrid contribution -1.064 2.010 0.568 2.344 sum -3.660 -6.442 -4.817 8.837 Atomic orbital electron populations 1.23117 0.75050 1.02888 1.02681 1.86195 1.23679 1.31437 1.87405 1.17952 0.83230 0.81967 0.76339 1.91034 1.64115 1.34736 1.55026 1.46127 1.02185 1.07726 1.75876 1.21710 0.96213 0.85882 1.01387 1.21430 0.99616 0.83887 0.95761 1.20831 0.77391 0.81504 0.91368 1.90644 1.50504 1.55067 1.45943 1.48168 1.58557 1.19048 1.06700 1.19516 0.95924 0.89672 0.83326 1.21468 1.00059 1.18349 1.16884 0.92134 1.24867 0.95607 0.97125 0.95846 1.69907 1.23642 1.37037 1.22528 0.86607 0.82334 0.80270 0.79051 1.20457 1.21147 1.19818 1.20082 0.92802 0.98077 0.84162 1.21640 0.94852 0.91366 0.93741 1.21973 0.99909 0.94970 0.98422 1.21484 0.93253 1.00201 0.96114 1.22020 0.99394 0.96027 1.02680 1.22619 0.96081 0.91520 0.96739 1.67560 0.99924 1.40766 1.08592 0.88356 0.92067 0.91994 0.92616 0.90693 0.90940 0.87162 0.85546 0.94394 0.94322 0.92591 0.89454 0.89424 0.84593 0.85485 0.85704 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 10.56 101.05 1.07 1.78 16 2 O -0.37 -5.99 9.39 -40.32 -0.38 -6.37 16 3 C 0.65 12.74 8.39 54.05 0.45 13.19 16 4 O -0.56 -13.08 15.71 -19.28 -0.30 -13.39 16 5 N -0.58 -10.32 2.36 -188.82 -0.45 -10.77 16 6 C 0.09 1.19 10.44 59.85 0.62 1.81 16 7 C 0.12 2.26 4.44 -5.20 -0.02 2.24 16 8 C 0.50 10.76 7.74 -10.99 -0.09 10.67 16 9 O -0.54 -12.76 16.01 5.55 0.09 -12.68 16 10 N -0.59 -12.35 2.44 -176.43 -0.43 -12.78 16 11 C 0.24 5.28 5.01 -5.20 -0.03 5.25 16 12 C -0.53 -13.45 9.14 -34.44 -0.31 -13.76 16 13 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -23.80 13.29 55.43 0.74 -23.06 16 16 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 20 C 0.17 3.27 5.76 -5.19 -0.03 3.24 16 21 C 0.12 2.43 6.36 -82.58 -0.53 1.91 16 22 C -0.13 -2.40 9.58 -39.44 -0.38 -2.78 16 23 C -0.08 -1.38 10.18 -39.28 -0.40 -1.78 16 24 C -0.18 -2.84 10.11 -39.44 -0.40 -3.24 16 25 C 0.09 1.55 11.18 -17.55 -0.20 1.36 16 26 N -0.46 -9.51 10.27 -9.47 -0.10 -9.61 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.94 7.38 -51.93 -0.38 0.56 16 32 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.11 1.79 7.33 -51.93 -0.38 1.41 16 34 H 0.13 2.79 7.28 -51.93 -0.38 2.42 16 35 H 0.04 0.86 6.44 -51.93 -0.33 0.52 16 36 H 0.04 0.88 7.89 -51.93 -0.41 0.47 16 37 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.09 1.65 7.42 -51.93 -0.39 1.27 16 39 H 0.09 1.41 7.79 -51.93 -0.40 1.01 16 40 H 0.14 2.34 8.06 -52.49 -0.42 1.92 16 41 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 42 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 43 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -34.28 375.20 -6.55 -40.82 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.02 Total: 4.62 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: -0.33 Total: 21.58 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.24 Total: -56.22 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.59 Total: -32.43 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.28 -6.55 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264029082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.596 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds