Wall clock time and date at job start Tue Mar 31 2020 13:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34637 * 117.00450 * 2 1 4 4 O 1.21507 * 119.99990 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99949 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00173 * 0.02562 * 5 3 2 7 7 C 1.46496 * 119.99934 * 179.97438 * 5 3 2 8 8 C 1.50698 * 109.47543 * 270.00564 * 7 5 3 9 9 O 1.21287 * 119.99499 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00377 * 180.02562 * 8 7 5 11 11 C 1.46497 * 119.99928 * 359.97438 * 10 8 7 12 12 C 1.50698 * 109.46886 * 270.00390 * 11 10 8 13 13 H 1.07994 * 120.00600 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99702 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00037 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00030 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46873 * 90.00281 * 16 14 12 18 18 H 1.48504 * 109.47057 * 210.00010 * 16 14 12 19 19 H 1.48496 * 109.47551 * 330.00287 * 16 14 12 20 20 C 1.46504 * 119.99689 * 179.97438 * 10 8 7 21 21 C 1.50707 * 109.46935 * 90.00167 * 20 10 8 22 22 C 1.38227 * 119.62059 * 95.01845 * 21 20 10 23 23 C 1.38627 * 119.15702 * 179.74122 * 22 21 20 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61137 * 274.99275 * 21 20 10 27 27 H 1.08997 * 109.47334 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47021 * 300.00287 * 1 2 3 29 29 H 1.09000 * 109.46322 * 60.00072 * 1 2 3 30 30 H 1.08999 * 109.46927 * 269.99490 * 6 5 3 31 31 H 1.09003 * 109.47576 * 29.99433 * 6 5 3 32 32 H 1.08997 * 109.47719 * 149.99788 * 6 5 3 33 33 H 1.08996 * 109.47340 * 150.00171 * 7 5 3 34 34 H 1.09001 * 109.47110 * 30.00045 * 7 5 3 35 35 H 1.08998 * 109.47243 * 30.00215 * 11 10 8 36 36 H 1.08997 * 109.46980 * 150.00484 * 11 10 8 37 37 H 0.97000 * 120.00213 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47679 * 329.99634 * 20 10 8 39 39 H 1.09003 * 109.46652 * 209.99594 * 20 10 8 40 40 H 1.07998 * 120.41916 * 359.95342 * 22 21 20 41 41 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 42 42 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 43 43 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1996 0.0000 4 8 1.4017 2.2187 -0.0005 5 7 3.4093 1.2700 0.0005 6 6 4.2071 0.0413 0.0005 7 6 4.0744 2.5752 0.0000 8 6 4.3030 3.0220 -1.4210 9 8 3.9459 2.3190 -2.3426 10 7 4.9052 4.2023 -1.6678 11 6 5.3371 5.0511 -0.5546 12 6 4.2195 5.9876 -0.1741 13 1 3.2815 5.9542 -0.7083 14 6 4.3945 6.8872 0.8560 15 7 5.5369 6.9282 1.5062 16 14 3.0094 8.0486 1.3273 17 1 2.1575 7.4089 2.3619 18 1 3.5816 9.3083 1.8668 19 1 2.1879 8.3519 0.1279 20 6 5.1279 4.6362 -3.0492 21 6 3.9385 5.4306 -3.5241 22 6 3.9582 6.8098 -3.4343 23 6 2.8612 7.5313 -3.8789 24 6 1.7764 6.8351 -4.3903 25 6 1.8289 5.4555 -4.4490 26 7 2.8914 4.8019 -4.0209 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 4.4046 -0.2636 1.0282 31 1 3.6587 -0.7481 -0.5136 32 1 5.1515 0.2213 -0.5129 33 1 5.0321 2.4952 0.5142 34 1 3.4462 3.3034 0.5131 35 1 5.5943 4.4260 0.3005 36 1 6.2096 5.6304 -0.8567 37 1 5.6602 7.5613 2.2307 38 1 5.2599 3.7627 -3.6878 39 1 6.0220 5.2581 -3.0950 40 1 4.8187 7.3190 -3.0261 41 1 2.8500 8.6100 -3.8245 42 1 0.9035 7.3646 -4.7425 43 1 0.9899 4.9060 -4.8497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264029082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:41 Heat of formation + Delta-G solvation = -83.362598 kcal Electronic energy + Delta-G solvation = -28220.862376 eV Core-core repulsion = 24266.331388 eV Total energy + Delta-G solvation = -3954.530989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77554 -41.17973 -40.25862 -37.80329 -36.88957 -36.47744 -34.64754 -33.34794 -32.80154 -30.33378 -29.36146 -28.65559 -27.58650 -26.46800 -24.86659 -24.27701 -23.20755 -21.96191 -20.15008 -19.15055 -18.67671 -18.38326 -18.15004 -17.72427 -17.38231 -17.14306 -16.81301 -16.52635 -16.23110 -15.73879 -15.56197 -15.07674 -14.90170 -14.50827 -14.33760 -14.23767 -13.97475 -13.93791 -13.79532 -13.43794 -13.32174 -13.12023 -12.99362 -12.87157 -12.77944 -12.60861 -12.50440 -12.09237 -11.82898 -11.73110 -11.70721 -11.04800 -10.71986 -10.58208 -10.33228 -9.97590 -9.71743 -9.45570 -8.18696 -6.27823 0.21563 0.46835 1.04065 1.35086 1.40167 1.47165 1.64536 1.76417 2.33542 2.43927 2.95623 3.07200 3.13088 3.46926 3.71699 3.92002 4.03316 4.10632 4.22106 4.26458 4.31422 4.31874 4.33810 4.47242 4.52384 4.61229 4.63317 4.70664 4.81996 4.89677 4.91416 4.93690 5.16040 5.17593 5.25694 5.28684 5.33239 5.68671 5.83596 5.87495 6.09814 6.18255 6.54580 6.83217 7.14072 7.19437 7.32067 7.44758 8.86567 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009559 B = 0.005559 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.331594 B = 5036.064653 C = 6080.672573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.366 6.366 3 C 0.644 3.356 4 O -0.611 6.611 5 N -0.580 5.580 6 C 0.086 3.914 7 C 0.124 3.876 8 C 0.498 3.502 9 O -0.568 6.568 10 N -0.591 5.591 11 C 0.249 3.751 12 C -0.525 4.525 13 H 0.034 0.966 14 C 0.036 3.964 15 N -0.911 5.911 16 Si 0.933 3.067 17 H -0.286 1.286 18 H -0.274 1.274 19 H -0.278 1.278 20 C 0.170 3.830 21 C 0.100 3.900 22 C -0.144 4.144 23 C -0.089 4.089 24 C -0.171 4.171 25 C 0.069 3.931 26 N -0.499 5.499 27 H 0.146 0.854 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.095 0.905 35 H 0.039 0.961 36 H 0.038 0.962 37 H 0.267 0.733 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.140 0.860 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.539 -7.537 -4.986 9.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.279 6.279 3 C 0.399 3.601 4 O -0.502 6.502 5 N -0.319 5.319 6 C -0.055 4.055 7 C -0.002 4.002 8 C 0.285 3.715 9 O -0.448 6.448 10 N -0.322 5.322 11 C 0.129 3.871 12 C -0.564 4.564 13 H 0.052 0.948 14 C -0.165 4.165 15 N -0.551 5.551 16 Si 0.760 3.240 17 H -0.212 1.212 18 H -0.199 1.199 19 H -0.203 1.203 20 C 0.046 3.954 21 C -0.039 4.039 22 C -0.165 4.165 23 C -0.115 4.115 24 C -0.190 4.190 25 C -0.088 4.088 26 N -0.209 5.209 27 H 0.164 0.836 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.159 0.841 34 H 0.113 0.887 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.158 0.842 41 H 0.175 0.825 42 H 0.182 0.818 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.837 -8.480 -5.349 10.420 hybrid contribution -1.065 1.966 0.500 2.291 sum -3.903 -6.514 -4.849 9.010 Atomic orbital electron populations 1.23496 0.73067 1.05767 1.02102 1.86214 1.25556 1.29295 1.86834 1.18266 0.83763 0.82270 0.75848 1.90992 1.65357 1.36531 1.57318 1.46308 1.02115 1.08574 1.74894 1.22000 0.95934 0.83975 1.03578 1.21309 1.00337 0.84211 0.94317 1.21215 0.76850 0.81420 0.91993 1.90620 1.51507 1.55758 1.46894 1.48151 1.58188 1.18657 1.07224 1.19264 0.94815 0.89268 0.83801 1.21428 0.99612 1.18860 1.16475 0.94798 1.25311 0.97026 0.98206 0.95979 1.69943 1.24464 1.37703 1.22955 0.85940 0.80403 0.79377 0.78275 1.21237 1.19916 1.20261 1.20244 0.93880 0.98311 0.82923 1.21713 0.95031 0.92175 0.94952 1.22111 1.00933 0.94569 0.98860 1.21922 0.92649 1.01791 0.95099 1.22414 1.00317 0.95306 1.01004 1.23098 0.95974 0.92947 0.96780 1.67507 1.01112 1.42280 1.09962 0.83644 0.92113 0.93220 0.89650 0.90093 0.90002 0.84102 0.88711 0.94306 0.94356 0.92347 0.90067 0.87087 0.84238 0.82482 0.81845 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.18 10.56 113.37 1.20 2.37 16 2 O -0.37 -11.44 9.39 -55.47 -0.52 -11.96 16 3 C 0.64 25.38 8.39 129.79 1.09 26.47 16 4 O -0.61 -29.38 15.71 19.82 0.31 -29.07 16 5 N -0.58 -20.45 2.36 -981.70 -2.32 -22.77 16 6 C 0.09 2.10 10.44 127.77 1.33 3.43 16 7 C 0.12 4.78 4.44 85.63 0.38 5.16 16 8 C 0.50 21.61 7.74 87.66 0.68 22.29 16 9 O -0.57 -27.13 16.01 -3.05 -0.05 -27.18 16 10 N -0.59 -24.87 2.44 -830.49 -2.03 -26.89 16 11 C 0.25 11.18 5.01 85.63 0.43 11.61 16 12 C -0.52 -26.84 9.14 25.60 0.23 -26.61 16 13 H 0.03 1.91 7.81 -2.91 -0.02 1.89 16 14 C 0.04 1.84 5.46 84.66 0.46 2.30 16 15 N -0.91 -47.98 13.29 21.45 0.28 -47.70 16 16 Si 0.93 42.71 29.54 68.60 2.03 44.74 16 17 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 C 0.17 6.49 5.76 85.63 0.49 6.99 16 21 C 0.10 3.98 6.36 42.55 0.27 4.25 16 22 C -0.14 -5.17 9.58 22.36 0.21 -4.96 16 23 C -0.09 -2.74 10.18 22.47 0.23 -2.51 16 24 C -0.17 -5.01 10.11 22.36 0.23 -4.79 16 25 C 0.07 2.41 11.18 84.67 0.95 3.35 16 26 N -0.50 -20.94 10.27 -183.88 -1.89 -22.83 16 27 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.88 7.38 -2.39 -0.02 1.87 16 32 H 0.08 1.85 8.07 -2.39 -0.02 1.83 16 33 H 0.14 4.44 7.33 -2.39 -0.02 4.43 16 34 H 0.09 4.33 7.28 -2.39 -0.02 4.31 16 35 H 0.04 1.75 6.44 -2.39 -0.02 1.73 16 36 H 0.04 1.74 7.89 -2.39 -0.02 1.72 16 37 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 38 H 0.08 3.16 7.42 -2.39 -0.02 3.14 16 39 H 0.11 3.58 7.79 -2.39 -0.02 3.56 16 40 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 41 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 42 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 43 H 0.16 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -75.16 375.20 5.02 -70.14 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 1.01 Total: 24.16 kcal Atomic # 6 Polarization: 41.17 SS G_CDS: 8.18 Total: 49.36 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -5.95 Total: -120.19 kcal Atomic # 8 Polarization: -67.95 SS G_CDS: -0.26 Total: -68.20 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -75.16 5.02 -70.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264029082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.218 kcal (2) G-P(sol) polarization free energy of solvation -75.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds