Wall clock time and date at job start Tue Mar 31 2020 13:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35961 * 117.00024 * 2 1 4 4 C 1.38664 * 120.06133 * 0.02562 * 3 2 1 5 5 C 1.38174 * 119.96784 * 179.70576 * 4 3 2 6 6 C 1.38265 * 120.09653 * 0.54319 * 5 4 3 7 7 C 1.50701 * 119.93715 * 179.72820 * 6 5 4 8 8 C 1.50700 * 109.46961 * 269.72508 * 7 6 5 9 9 O 1.21283 * 119.99939 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99552 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99586 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47006 * 90.00023 * 11 10 8 13 13 H 1.07991 * 120.00449 * 359.72165 * 12 11 10 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00035 * 179.72339 * 14 12 11 16 16 Si 1.86803 * 119.99853 * 359.72191 * 14 12 11 17 17 H 1.48500 * 109.46986 * 90.00256 * 16 14 12 18 18 H 1.48496 * 109.47029 * 210.00273 * 16 14 12 19 19 H 1.48499 * 109.47352 * 330.00102 * 16 14 12 20 20 C 1.46497 * 120.00280 * 0.02562 * 10 8 7 21 21 C 1.52999 * 109.47309 * 269.99886 * 20 10 8 22 22 C 1.53003 * 117.50234 * 243.62275 * 21 20 10 23 23 C 1.52996 * 117.50283 * 174.99987 * 21 20 10 24 24 C 1.38259 * 120.12141 * 359.45618 * 6 5 4 25 25 C 1.38326 * 120.03220 * 0.27126 * 24 6 5 26 26 F 1.35102 * 120.04967 * 179.97438 * 25 24 6 27 27 H 1.08996 * 109.47308 * 299.99843 * 1 2 3 28 28 H 1.09002 * 109.47381 * 59.99983 * 1 2 3 29 29 H 1.09003 * 109.47072 * 179.97438 * 1 2 3 30 30 H 1.08007 * 120.01282 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.95172 * 180.29611 * 5 4 3 32 32 H 1.09007 * 109.46429 * 149.72742 * 7 6 5 33 33 H 1.09002 * 109.47221 * 29.72946 * 7 6 5 34 34 H 1.08998 * 109.47049 * 329.99451 * 11 10 8 35 35 H 1.09001 * 109.46896 * 209.99722 * 11 10 8 36 36 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.47146 * 30.00231 * 20 10 8 38 38 H 1.09008 * 109.47223 * 150.00153 * 20 10 8 39 39 H 1.09004 * 115.55120 * 29.33333 * 21 20 10 40 40 H 1.08998 * 117.49706 * 359.97438 * 22 21 20 41 41 H 1.08995 * 117.49694 * 145.01745 * 22 21 20 42 42 H 1.08994 * 117.50293 * 214.98601 * 23 21 20 43 43 H 1.09010 * 117.49867 * 0.02562 * 23 21 20 44 44 H 1.07996 * 119.98212 * 180.25441 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3752 0.0005 5 6 1.9216 3.6053 0.0067 6 6 3.3023 3.6777 0.0010 7 6 3.9849 5.0213 0.0015 8 6 4.2124 5.4697 -1.4191 9 8 3.8550 4.7676 -2.3412 10 7 4.8130 6.6509 -1.6649 11 6 5.0337 7.0871 -3.0460 12 6 3.8430 7.8808 -3.5184 13 1 3.0037 8.0402 -2.8578 14 6 3.8229 8.3990 -4.7960 15 7 2.7815 9.0871 -5.2102 16 14 5.2750 8.1238 -5.9385 17 1 5.0674 6.8721 -6.7101 18 1 5.3914 9.2697 -6.8758 19 1 6.5205 8.0109 -5.1377 20 6 5.2452 7.4986 -0.5510 21 6 4.1100 8.4478 -0.1622 22 6 4.3513 9.9482 -0.3403 23 6 4.3228 9.3392 1.0630 24 6 4.0579 2.5199 0.0004 25 6 3.4333 1.2856 -0.0001 26 9 4.1713 0.1540 -0.0011 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2136 2.3200 0.0005 31 1 1.3340 4.5115 0.0119 32 1 4.9430 4.9418 0.5153 33 1 3.3560 5.7481 0.5157 34 1 5.1659 6.2146 -3.6858 35 1 5.9270 7.7100 -3.0919 36 1 2.7675 9.4520 -6.1088 37 1 5.5040 6.8727 0.3028 38 1 6.1169 8.0793 -0.8533 39 1 3.1021 8.0747 -0.3441 40 1 5.3189 10.2591 -0.7341 41 1 3.5021 10.5624 -0.6397 42 1 3.4550 9.5528 1.6869 43 1 5.2718 9.2497 1.5918 44 1 5.1362 2.5791 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264114194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:48 Heat of formation + Delta-G solvation = -61.987422 kcal Electronic energy + Delta-G solvation = -26977.492928 eV Core-core repulsion = 23003.968875 eV Total energy + Delta-G solvation = -3973.524053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.72084 -40.19737 -39.30573 -37.65333 -36.92374 -34.43286 -32.62451 -31.98903 -30.73104 -28.97803 -27.96591 -26.65362 -25.84945 -22.80831 -22.68502 -22.01559 -21.31194 -20.56758 -18.63095 -18.27896 -17.00632 -16.86716 -16.77501 -16.49936 -16.14479 -15.67834 -15.06766 -14.93945 -14.84549 -14.62956 -14.29849 -14.05456 -13.88212 -13.65771 -12.94727 -12.89143 -12.44116 -12.39877 -12.29382 -12.21172 -11.83213 -11.71077 -11.48994 -11.31269 -11.19328 -11.15867 -11.09266 -10.92831 -10.53916 -10.17402 -9.99879 -9.61525 -9.46516 -9.08807 -8.88858 -8.56109 -8.09542 -7.75317 -6.06298 -4.03446 1.16038 1.22375 3.03088 3.28409 3.29781 3.35384 3.38007 3.47599 3.86098 4.18570 4.22473 4.41373 4.61478 4.68718 4.86689 4.95884 4.96157 5.09988 5.13213 5.21784 5.23150 5.26566 5.28027 5.40267 5.43868 5.46485 5.65452 5.68918 5.79314 5.83393 5.88560 5.99187 6.07340 6.13813 6.29691 6.44024 6.51253 6.58055 6.61713 6.71178 6.94945 7.19871 7.33109 7.63386 8.22087 8.49525 8.93477 8.99862 9.54707 11.07093 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.003525 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.123061 B = 7941.398703 C = 8892.068245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.088 3.912 4 C -0.178 4.178 5 C -0.072 4.072 6 C -0.062 4.062 7 C -0.101 4.101 8 C 0.509 3.491 9 O -0.530 6.530 10 N -0.591 5.591 11 C 0.216 3.784 12 C -0.518 4.518 13 H 0.076 0.924 14 C 0.072 3.928 15 N -0.899 5.899 16 Si 0.872 3.128 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.145 3.855 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.191 4.191 24 C -0.103 4.103 25 C 0.068 3.932 26 F -0.136 7.136 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.035 0.965 35 H 0.028 0.972 36 H 0.263 0.737 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.073 -9.166 16.512 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.042 3.958 4 C -0.197 4.197 5 C -0.090 4.090 6 C -0.063 4.063 7 C -0.141 4.141 8 C 0.295 3.705 9 O -0.407 6.407 10 N -0.323 5.323 11 C 0.096 3.904 12 C -0.556 4.556 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.538 5.538 16 Si 0.699 3.301 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.192 1.192 20 C 0.021 3.979 21 C -0.175 4.175 22 C -0.197 4.197 23 C -0.228 4.228 24 C -0.121 4.121 25 C 0.049 3.951 26 F -0.115 7.115 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.063 -9.682 15.824 18.551 hybrid contribution 0.413 0.118 -0.845 0.948 sum 0.350 -9.564 14.979 17.775 Atomic orbital electron populations 1.23090 0.78134 1.04008 1.01591 1.86107 1.21575 1.26004 1.88993 1.18948 0.90770 0.85505 1.00533 1.21060 1.00136 0.91371 1.07122 1.20887 0.93886 0.97412 0.96817 1.19111 0.93266 0.93639 1.00302 1.20743 1.02157 0.94518 0.96689 1.20184 0.78439 0.81599 0.90238 1.90709 1.49582 1.54258 1.46103 1.47903 1.58442 1.17796 1.08130 1.19675 0.97254 0.95488 0.77981 1.21284 1.03071 1.32061 0.99226 0.90577 1.24833 0.95744 0.94805 0.97609 1.69889 1.29300 1.36162 1.18423 0.86916 0.83551 0.78141 0.81456 1.20030 1.21180 1.19165 1.21049 0.95468 0.92371 0.89028 1.22713 1.00778 0.93071 1.00909 1.22861 1.03187 0.96012 0.97647 1.22976 1.02487 1.06088 0.91286 1.20801 1.00804 0.89740 1.00804 1.16840 0.85874 0.82804 1.09624 1.91476 1.76478 1.49095 1.94428 0.92524 0.92331 0.88171 0.84561 0.84977 0.88355 0.87867 0.94687 0.95433 0.92709 0.91043 0.90584 0.87698 0.88974 0.88966 0.89334 0.89245 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.08 10.36 -19.62 -0.20 -4.28 16 3 C 0.09 1.23 6.69 -39.18 -0.26 0.97 16 4 C -0.18 -2.23 9.04 -39.45 -0.36 -2.59 16 5 C -0.07 -0.96 9.69 -39.59 -0.38 -1.34 16 6 C -0.06 -0.88 4.37 -104.60 -0.46 -1.34 16 7 C -0.10 -1.35 4.38 -29.03 -0.13 -1.48 16 8 C 0.51 9.75 7.67 -10.99 -0.08 9.66 16 9 O -0.53 -12.69 15.61 5.55 0.09 -12.60 16 10 N -0.59 -11.44 2.46 -175.06 -0.43 -11.87 16 11 C 0.22 5.14 4.27 -5.19 -0.02 5.12 16 12 C -0.52 -14.37 9.94 -34.44 -0.34 -14.71 16 13 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 16 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 17 H -0.27 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 20 C 0.15 2.12 5.54 -4.04 -0.02 2.09 16 21 C -0.16 -2.29 5.94 -90.62 -0.54 -2.83 16 22 C -0.16 -2.36 10.18 -26.73 -0.27 -2.63 16 23 C -0.19 -2.21 10.25 -26.74 -0.27 -2.49 16 24 C -0.10 -1.44 9.67 -39.54 -0.38 -1.82 16 25 C 0.07 1.02 7.31 -39.30 -0.29 0.73 16 26 F -0.14 -2.11 17.11 2.25 0.04 -2.07 16 27 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.14 1.32 6.30 -52.48 -0.33 0.99 16 31 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 32 H 0.10 1.02 7.34 -51.93 -0.38 0.64 16 33 H 0.10 1.19 7.98 -51.93 -0.41 0.78 16 34 H 0.04 0.90 6.86 -51.93 -0.36 0.55 16 35 H 0.03 0.63 6.94 -51.93 -0.36 0.27 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 38 H 0.08 1.08 7.63 -51.92 -0.40 0.68 16 39 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.09 1.33 8.03 -51.93 -0.42 0.91 16 41 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 44 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -34.82 373.98 -8.02 -42.85 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.34 Total: 1.57 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.92 Total: -9.47 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.34 Total: -38.43 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.12 Total: -16.89 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.82 -8.02 -42.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264114194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.142 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds