Wall clock time and date at job start Tue Mar 31 2020 13:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35961 * 117.00024 * 2 1 4 4 C 1.38664 * 120.06133 * 0.02562 * 3 2 1 5 5 C 1.38174 * 119.96784 * 179.70576 * 4 3 2 6 6 C 1.38265 * 120.09653 * 0.54319 * 5 4 3 7 7 C 1.50701 * 119.93715 * 179.72820 * 6 5 4 8 8 C 1.50700 * 109.46961 * 269.72508 * 7 6 5 9 9 O 1.21283 * 119.99939 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99552 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99586 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47006 * 90.00023 * 11 10 8 13 13 H 1.07991 * 120.00449 * 359.72165 * 12 11 10 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00035 * 179.72339 * 14 12 11 16 16 Si 1.86803 * 119.99853 * 359.72191 * 14 12 11 17 17 H 1.48500 * 109.46986 * 90.00256 * 16 14 12 18 18 H 1.48496 * 109.47029 * 210.00273 * 16 14 12 19 19 H 1.48499 * 109.47352 * 330.00102 * 16 14 12 20 20 C 1.46497 * 120.00280 * 0.02562 * 10 8 7 21 21 C 1.52999 * 109.47309 * 269.99886 * 20 10 8 22 22 C 1.53003 * 117.50234 * 243.62275 * 21 20 10 23 23 C 1.52996 * 117.50283 * 174.99987 * 21 20 10 24 24 C 1.38259 * 120.12141 * 359.45618 * 6 5 4 25 25 C 1.38326 * 120.03220 * 0.27126 * 24 6 5 26 26 F 1.35102 * 120.04967 * 179.97438 * 25 24 6 27 27 H 1.08996 * 109.47308 * 299.99843 * 1 2 3 28 28 H 1.09002 * 109.47381 * 59.99983 * 1 2 3 29 29 H 1.09003 * 109.47072 * 179.97438 * 1 2 3 30 30 H 1.08007 * 120.01282 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.95172 * 180.29611 * 5 4 3 32 32 H 1.09007 * 109.46429 * 149.72742 * 7 6 5 33 33 H 1.09002 * 109.47221 * 29.72946 * 7 6 5 34 34 H 1.08998 * 109.47049 * 329.99451 * 11 10 8 35 35 H 1.09001 * 109.46896 * 209.99722 * 11 10 8 36 36 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.47146 * 30.00231 * 20 10 8 38 38 H 1.09008 * 109.47223 * 150.00153 * 20 10 8 39 39 H 1.09004 * 115.55120 * 29.33333 * 21 20 10 40 40 H 1.08998 * 117.49706 * 359.97438 * 22 21 20 41 41 H 1.08995 * 117.49694 * 145.01745 * 22 21 20 42 42 H 1.08994 * 117.50293 * 214.98601 * 23 21 20 43 43 H 1.09010 * 117.49867 * 0.02562 * 23 21 20 44 44 H 1.07996 * 119.98212 * 180.25441 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3752 0.0005 5 6 1.9216 3.6053 0.0067 6 6 3.3023 3.6777 0.0010 7 6 3.9849 5.0213 0.0015 8 6 4.2124 5.4697 -1.4191 9 8 3.8550 4.7676 -2.3412 10 7 4.8130 6.6509 -1.6649 11 6 5.0337 7.0871 -3.0460 12 6 3.8430 7.8808 -3.5184 13 1 3.0037 8.0402 -2.8578 14 6 3.8229 8.3990 -4.7960 15 7 2.7815 9.0871 -5.2102 16 14 5.2750 8.1238 -5.9385 17 1 5.0674 6.8721 -6.7101 18 1 5.3914 9.2697 -6.8758 19 1 6.5205 8.0109 -5.1377 20 6 5.2452 7.4986 -0.5510 21 6 4.1100 8.4478 -0.1622 22 6 4.3513 9.9482 -0.3403 23 6 4.3228 9.3392 1.0630 24 6 4.0579 2.5199 0.0004 25 6 3.4333 1.2856 -0.0001 26 9 4.1713 0.1540 -0.0011 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2136 2.3200 0.0005 31 1 1.3340 4.5115 0.0119 32 1 4.9430 4.9418 0.5153 33 1 3.3560 5.7481 0.5157 34 1 5.1659 6.2146 -3.6858 35 1 5.9270 7.7100 -3.0919 36 1 2.7675 9.4520 -6.1088 37 1 5.5040 6.8727 0.3028 38 1 6.1169 8.0793 -0.8533 39 1 3.1021 8.0747 -0.3441 40 1 5.3189 10.2591 -0.7341 41 1 3.5021 10.5624 -0.6397 42 1 3.4550 9.5528 1.6869 43 1 5.2718 9.2497 1.5918 44 1 5.1362 2.5791 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264114194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:47 Heat of formation + Delta-G solvation = -83.176622 kcal Electronic energy + Delta-G solvation = -26978.411761 eV Core-core repulsion = 23003.968875 eV Total energy + Delta-G solvation = -3974.442886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.84717 -41.29410 -40.59424 -38.69968 -38.13532 -36.02059 -34.58307 -33.23499 -31.74131 -30.61687 -28.98946 -27.74684 -27.19838 -24.39986 -23.80892 -23.07150 -22.55894 -21.76829 -20.00112 -19.28974 -18.98862 -18.01656 -17.92219 -17.85901 -17.15441 -17.10908 -16.45222 -16.06139 -15.89941 -15.81955 -15.72988 -15.22028 -15.07955 -14.82007 -14.64359 -14.25522 -14.02692 -13.60801 -13.50797 -13.27621 -13.10256 -13.08512 -12.72055 -12.59573 -12.48743 -12.40615 -12.21945 -12.08576 -12.01106 -11.95502 -11.63266 -11.18823 -10.79912 -10.72911 -10.54419 -9.93512 -9.37352 -9.14052 -8.28054 -6.29673 0.12223 0.18175 1.32502 1.36557 1.43558 1.84403 2.17154 2.27318 2.33434 2.63269 3.06706 3.09216 3.18909 3.60509 3.72437 3.79675 3.99353 4.02508 4.15484 4.22472 4.29989 4.36123 4.36663 4.43113 4.49224 4.58547 4.62453 4.68440 4.73255 4.77672 4.88326 4.91509 4.94584 4.99293 5.06067 5.13226 5.18503 5.38856 5.41741 5.47946 5.52634 5.63144 5.71977 6.26562 6.31517 6.71537 6.76605 7.29182 7.49383 8.88622 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.003525 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.123061 B = 7941.398703 C = 8892.068245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.082 3.918 4 C -0.178 4.178 5 C -0.080 4.080 6 C -0.078 4.078 7 C -0.086 4.086 8 C 0.501 3.499 9 O -0.589 6.589 10 N -0.597 5.597 11 C 0.224 3.776 12 C -0.513 4.513 13 H 0.035 0.965 14 C 0.011 3.989 15 N -0.947 5.947 16 Si 0.937 3.063 17 H -0.281 1.281 18 H -0.279 1.279 19 H -0.239 1.239 20 C 0.141 3.859 21 C -0.172 4.172 22 C -0.190 4.190 23 C -0.142 4.142 24 C -0.105 4.105 25 C 0.041 3.959 26 F -0.146 7.146 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.122 0.878 30 H 0.163 0.837 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.014 0.986 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 -9.395 18.806 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.036 3.964 4 C -0.196 4.196 5 C -0.099 4.099 6 C -0.079 4.079 7 C -0.125 4.125 8 C 0.291 3.709 9 O -0.469 6.469 10 N -0.327 5.327 11 C 0.101 3.899 12 C -0.552 4.552 13 H 0.053 0.947 14 C -0.186 4.186 15 N -0.588 5.588 16 Si 0.761 3.239 17 H -0.207 1.207 18 H -0.204 1.204 19 H -0.162 1.162 20 C 0.019 3.981 21 C -0.192 4.192 22 C -0.228 4.228 23 C -0.179 4.179 24 C -0.123 4.123 25 C 0.021 3.979 26 F -0.125 7.125 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.180 0.820 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.144 0.856 34 H 0.032 0.968 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.452 -9.895 18.181 20.750 hybrid contribution -0.214 0.173 -1.516 1.541 sum 1.238 -9.721 16.665 19.333 Atomic orbital electron populations 1.23429 0.75801 1.05918 1.02618 1.86087 1.24057 1.25774 1.88814 1.19142 0.90790 0.86350 1.00092 1.21337 1.01462 0.90592 1.06208 1.21179 0.94120 0.98208 0.96356 1.19268 0.93672 0.93922 1.01003 1.20733 1.04657 0.94398 0.92703 1.21218 0.76802 0.80725 0.92192 1.90677 1.51842 1.55928 1.48483 1.47970 1.58484 1.18650 1.07575 1.19317 0.95839 0.94038 0.80665 1.21489 1.03271 1.31816 0.98653 0.94650 1.25738 0.98720 0.94665 0.99523 1.70044 1.31784 1.37917 1.19054 0.85868 0.81010 0.77646 0.79347 1.20731 1.20436 1.16177 1.21411 0.95263 0.92605 0.88846 1.22606 0.99553 0.92916 1.04107 1.22884 1.02359 0.96032 1.01474 1.23061 1.04471 1.00956 0.89453 1.20995 1.01657 0.89471 1.00216 1.17170 0.86594 0.82942 1.11208 1.91440 1.76746 1.49590 1.94675 0.90734 0.91963 0.85986 0.81955 0.83980 0.84382 0.85621 0.96783 0.93691 0.92665 0.86284 0.89848 0.90571 0.88847 0.91402 0.88069 0.86027 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.43 10.36 -93.11 -0.96 -9.40 16 3 C 0.08 2.26 6.69 22.53 0.15 2.41 16 4 C -0.18 -4.23 9.04 22.36 0.20 -4.03 16 5 C -0.08 -2.06 9.69 22.26 0.22 -1.84 16 6 C -0.08 -2.07 4.37 -19.85 -0.09 -2.16 16 7 C -0.09 -2.06 4.38 29.10 0.13 -1.93 16 8 C 0.50 18.76 7.67 87.66 0.67 19.43 16 9 O -0.59 -28.65 15.61 -3.04 -0.05 -28.69 16 10 N -0.60 -22.42 2.46 -826.15 -2.03 -24.45 16 11 C 0.22 10.59 4.27 85.63 0.37 10.96 16 12 C -0.51 -29.34 9.94 25.60 0.25 -29.09 16 13 H 0.04 2.25 8.06 -2.92 -0.02 2.23 16 14 C 0.01 0.63 5.47 84.66 0.46 1.10 16 15 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 16 Si 0.94 44.63 27.47 68.60 1.88 46.51 16 17 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 20 C 0.14 3.70 5.54 86.38 0.48 4.17 16 21 C -0.17 -4.82 5.94 -10.79 -0.06 -4.88 16 22 C -0.19 -5.48 10.18 30.59 0.31 -5.17 16 23 C -0.14 -2.79 10.25 30.59 0.31 -2.48 16 24 C -0.10 -2.83 9.67 22.30 0.22 -2.62 16 25 C 0.04 1.20 7.31 22.45 0.16 1.36 16 26 F -0.15 -4.54 17.11 44.97 0.77 -3.77 16 27 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 28 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 29 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.16 2.84 6.30 -2.91 -0.02 2.82 16 31 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.14 2.21 7.34 -2.38 -0.02 2.19 16 33 H 0.13 2.49 7.98 -2.39 -0.02 2.47 16 34 H 0.01 0.73 6.86 -2.39 -0.02 0.71 16 35 H 0.05 1.97 6.94 -2.39 -0.02 1.96 16 36 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.12 2.00 6.44 -2.39 -0.02 1.98 16 38 H 0.08 2.09 7.63 -2.38 -0.02 2.07 16 39 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 40 H 0.09 2.62 8.03 -2.39 -0.02 2.60 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -81.20 373.98 5.76 -75.45 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.95 Total: 17.10 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 4.90 Total: -13.42 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -1.73 Total: -83.78 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -1.01 Total: -38.09 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.77 Total: -3.77 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -81.20 5.76 -75.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264114194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.731 kcal (2) G-P(sol) polarization free energy of solvation -81.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds