Wall clock time and date at job start Tue Mar 31 2020 12:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46978 * 2 1 4 4 C 1.46491 * 120.00389 * 270.00318 * 3 2 1 5 5 C 1.50701 * 109.47365 * 270.00106 * 4 3 2 6 6 H 1.08005 * 119.99596 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00119 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99791 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00169 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46696 * 90.00166 * 9 7 5 11 11 H 1.48501 * 109.46657 * 210.00034 * 9 7 5 12 12 H 1.48495 * 109.46985 * 330.00286 * 9 7 5 13 13 C 1.34776 * 119.99717 * 90.00160 * 3 2 1 14 14 O 1.21278 * 120.00247 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99901 * 0.02562 * 13 3 2 16 16 N 1.46910 * 109.46960 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99702 * 293.95134 * 16 15 13 18 18 C 1.39676 * 110.99647 * 169.99870 * 16 15 13 19 19 C 1.38930 * 120.07263 * 59.97966 * 18 16 15 20 20 C 1.38089 * 119.92063 * 180.02562 * 19 18 16 21 21 C 1.38306 * 120.07673 * 359.72243 * 20 19 18 22 22 C 1.38265 * 120.14784 * 0.55309 * 21 20 19 23 23 C 1.38133 * 120.07407 * 359.44555 * 22 21 20 24 24 N 1.48004 * 120.03704 * 180.29695 * 23 22 21 25 25 O 1.21803 * 119.99981 * 0.02562 * 24 23 22 26 26 O 1.21799 * 119.99889 * 180.02562 * 24 23 22 27 27 H 1.09002 * 109.46788 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47144 * 299.99277 * 1 2 3 29 29 H 1.08996 * 109.47282 * 59.99747 * 1 2 3 30 30 H 1.08997 * 109.47144 * 240.00723 * 2 1 3 31 31 H 1.08996 * 109.47282 * 120.00253 * 2 1 3 32 32 H 1.09003 * 109.47233 * 29.99717 * 4 3 2 33 33 H 1.09003 * 109.47253 * 149.99935 * 4 3 2 34 34 H 0.97003 * 119.99835 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47374 * 60.00283 * 15 13 3 36 36 H 1.08996 * 109.47079 * 299.99634 * 15 13 3 37 37 H 1.08999 * 109.47578 * 296.04333 * 17 16 15 38 38 H 1.08997 * 109.47340 * 56.05047 * 17 16 15 39 39 H 1.09006 * 109.46874 * 176.04798 * 17 16 15 40 40 H 1.07998 * 120.04182 * 359.97438 * 19 18 16 41 41 H 1.07994 * 119.96009 * 179.97438 * 20 19 18 42 42 H 1.08001 * 119.92834 * 180.28197 * 21 20 19 43 43 H 1.08002 * 119.96572 * 179.72711 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6856 1.8352 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1492 2.3908 -2.8774 8 7 5.3914 2.1846 -3.2568 9 14 3.0128 3.4364 -3.9285 10 1 3.1155 4.8565 -3.5065 11 1 3.4065 3.3142 -5.3552 12 1 1.6133 2.9697 -3.7594 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1673 15 6 1.9923 1.3058 2.4723 16 7 2.3110 2.2057 3.5890 17 6 3.7477 2.5094 3.6267 18 6 1.8811 1.6673 4.8040 19 6 2.3767 0.4440 5.2376 20 6 1.9491 -0.0856 6.4391 21 6 1.0328 0.6029 7.2132 22 6 0.5333 1.8178 6.7818 23 6 0.9567 2.3534 5.5810 24 7 0.4264 3.6571 5.1232 25 8 -0.3836 4.2586 5.8056 26 8 0.7999 4.1285 4.0641 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1412 -1.1382 34 1 5.7174 2.5751 -4.0827 35 1 2.6229 0.4186 2.5299 36 1 0.9445 1.0113 2.5303 37 1 4.3076 1.5946 3.8213 38 1 4.0561 2.9272 2.6684 39 1 3.9457 3.2318 4.4186 40 1 3.0950 -0.0925 4.6355 41 1 2.3337 -1.0367 6.7766 42 1 0.7035 0.1886 8.1546 43 1 -0.1855 2.3509 7.3865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266611434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:26 Heat of formation + Delta-G solvation = 23.837570 kcal Electronic energy + Delta-G solvation = -27860.036872 eV Core-core repulsion = 23910.154431 eV Total energy + Delta-G solvation = -3949.882440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.00639 -40.34444 -39.09895 -36.85810 -36.05705 -35.26368 -32.73249 -32.22859 -30.72745 -30.30288 -28.92145 -27.09922 -26.50312 -25.13502 -23.02074 -22.88456 -22.26964 -21.37272 -19.21323 -18.39592 -18.28459 -17.35542 -17.24527 -16.93472 -16.38091 -15.95089 -15.66714 -15.37493 -14.91677 -14.72559 -14.44521 -13.88725 -13.67430 -13.49163 -13.15883 -12.95721 -12.70904 -12.58390 -12.34006 -12.09991 -11.97491 -11.74031 -11.51609 -11.33788 -11.25554 -10.97752 -10.91724 -10.77356 -10.69498 -10.48068 -10.13391 -9.91636 -9.54694 -9.50612 -9.08897 -8.57844 -8.48191 -7.70868 -6.08516 -4.07163 -0.20619 0.51442 1.37852 1.55506 2.92302 3.20457 3.31866 3.32754 3.37871 3.40821 3.90215 4.12311 4.29071 4.41327 4.47556 4.54354 4.64736 4.88731 5.05296 5.06967 5.17313 5.25538 5.30276 5.32168 5.43619 5.50547 5.51600 5.60305 5.66390 5.68923 5.90884 5.94175 6.11314 6.23744 6.35950 6.52287 6.57253 6.74023 6.95123 7.01862 7.35957 7.62152 7.91484 8.24776 8.47176 8.92622 9.00899 9.52432 11.04752 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.003516 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.017720 B = 7961.834125 C = 8284.166292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.594 5.594 4 C 0.218 3.782 5 C -0.528 4.528 6 H 0.073 0.927 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.512 3.488 14 O -0.509 6.509 15 C 0.044 3.956 16 N -0.483 5.483 17 C 0.026 3.974 18 C 0.163 3.837 19 C -0.154 4.154 20 C -0.061 4.061 21 C -0.126 4.126 22 C -0.055 4.055 23 C -0.027 4.027 24 N 0.021 4.979 25 O -0.208 6.208 26 O -0.077 6.077 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.027 0.973 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.266 -9.466 20.497 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.098 3.902 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.191 1.191 13 C 0.297 3.703 14 O -0.383 6.383 15 C -0.086 4.086 16 N -0.204 5.204 17 C -0.119 4.119 18 C 0.067 3.933 19 C -0.175 4.175 20 C -0.080 4.080 21 C -0.145 4.145 22 C -0.074 4.074 23 C -0.111 4.111 24 N 0.543 4.457 25 O -0.409 6.409 26 O -0.311 6.311 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.046 0.954 38 H 0.129 0.871 39 H 0.086 0.914 40 H 0.162 0.838 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.978 -8.953 20.573 24.166 hybrid contribution -0.183 -0.068 -0.598 0.629 sum -9.160 -9.021 19.975 23.755 Atomic orbital electron populations 1.22244 0.96790 1.01506 1.02376 1.21431 0.93407 0.84025 1.02909 1.47913 1.64647 1.13255 1.06903 1.19644 0.97199 0.93544 0.79862 1.21312 0.95328 1.32868 1.07120 0.90881 1.24845 0.94983 0.95765 0.97365 1.69897 1.15147 1.45061 1.23601 0.86854 0.81468 0.81754 0.79663 1.19775 1.21161 1.19057 1.19831 0.79106 0.87091 0.84308 1.90681 1.43989 1.17255 1.86421 1.22153 1.02473 0.93746 0.90200 1.59380 1.19532 1.43045 0.98436 1.22670 0.83151 0.99844 1.06229 1.18761 0.91981 0.91177 0.91352 1.21907 1.01699 0.95858 0.98009 1.21489 0.94116 0.99439 0.92943 1.21207 0.98067 0.94137 1.01044 1.21060 0.97907 0.95500 0.92951 1.21257 1.03377 0.88003 0.98454 1.43455 0.99577 1.01908 1.00759 1.94495 1.29615 1.61149 1.55600 1.94756 1.59576 1.68472 1.08307 0.92035 0.93118 0.91994 0.89587 0.91851 0.95302 0.94359 0.92587 0.91671 0.88570 0.95414 0.87086 0.91449 0.83797 0.84114 0.83705 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.16 0.38 -1.74 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -11.82 2.46 -175.06 -0.43 -12.25 16 4 C 0.22 5.25 4.23 -5.20 -0.02 5.23 16 5 C -0.53 -14.87 9.94 -34.44 -0.34 -15.21 16 6 H 0.07 2.24 8.06 -52.48 -0.42 1.82 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 9 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 C 0.51 10.14 7.37 -10.98 -0.08 10.06 16 14 O -0.51 -12.26 13.91 5.56 0.08 -12.19 16 15 C 0.04 0.63 3.58 -4.97 -0.02 0.61 16 16 N -0.48 -7.15 2.35 -180.32 -0.42 -7.58 16 17 C 0.03 0.38 9.02 60.06 0.54 0.93 16 18 C 0.16 1.95 4.67 -83.79 -0.39 1.56 16 19 C -0.15 -1.29 8.66 -39.38 -0.34 -1.63 16 20 C -0.06 -0.36 10.04 -39.61 -0.40 -0.76 16 21 C -0.13 -0.74 10.04 -39.55 -0.40 -1.14 16 22 C -0.05 -0.48 9.55 -39.61 -0.38 -0.86 16 23 C -0.03 -0.33 6.87 -79.75 -0.55 -0.88 16 24 N 0.02 0.33 4.45 34.06 0.15 0.48 16 25 O -0.21 -3.35 18.45 -29.46 -0.54 -3.89 16 26 O -0.08 -1.44 17.10 -29.46 -0.50 -1.94 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 32 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 33 H 0.04 1.00 6.85 -51.93 -0.36 0.65 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.07 0.79 6.73 -51.93 -0.35 0.44 16 36 H 0.10 1.26 7.10 -51.93 -0.37 0.89 16 37 H 0.03 0.33 7.34 -51.93 -0.38 -0.05 16 38 H 0.11 2.02 5.82 -51.93 -0.30 1.71 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.14 1.03 7.14 -52.49 -0.37 0.66 16 41 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 42 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.15 1.16 7.61 -52.49 -0.40 0.76 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -35.64 360.88 -7.98 -43.62 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.73 Total: -1.67 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.12 Total: -0.27 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.07 Total: -46.03 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.97 Total: -18.02 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.64 -7.98 -43.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266611434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.456 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds