Wall clock time and date at job start Tue Mar 31 2020 12:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46978 * 2 1 4 4 C 1.46491 * 120.00389 * 270.00318 * 3 2 1 5 5 C 1.50701 * 109.47365 * 270.00106 * 4 3 2 6 6 H 1.08005 * 119.99596 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00119 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99791 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00169 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46696 * 90.00166 * 9 7 5 11 11 H 1.48501 * 109.46657 * 210.00034 * 9 7 5 12 12 H 1.48495 * 109.46985 * 330.00286 * 9 7 5 13 13 C 1.34776 * 119.99717 * 90.00160 * 3 2 1 14 14 O 1.21278 * 120.00247 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99901 * 0.02562 * 13 3 2 16 16 N 1.46910 * 109.46960 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99702 * 293.95134 * 16 15 13 18 18 C 1.39676 * 110.99647 * 169.99870 * 16 15 13 19 19 C 1.38930 * 120.07263 * 59.97966 * 18 16 15 20 20 C 1.38089 * 119.92063 * 180.02562 * 19 18 16 21 21 C 1.38306 * 120.07673 * 359.72243 * 20 19 18 22 22 C 1.38265 * 120.14784 * 0.55309 * 21 20 19 23 23 C 1.38133 * 120.07407 * 359.44555 * 22 21 20 24 24 N 1.48004 * 120.03704 * 180.29695 * 23 22 21 25 25 O 1.21803 * 119.99981 * 0.02562 * 24 23 22 26 26 O 1.21799 * 119.99889 * 180.02562 * 24 23 22 27 27 H 1.09002 * 109.46788 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47144 * 299.99277 * 1 2 3 29 29 H 1.08996 * 109.47282 * 59.99747 * 1 2 3 30 30 H 1.08997 * 109.47144 * 240.00723 * 2 1 3 31 31 H 1.08996 * 109.47282 * 120.00253 * 2 1 3 32 32 H 1.09003 * 109.47233 * 29.99717 * 4 3 2 33 33 H 1.09003 * 109.47253 * 149.99935 * 4 3 2 34 34 H 0.97003 * 119.99835 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47374 * 60.00283 * 15 13 3 36 36 H 1.08996 * 109.47079 * 299.99634 * 15 13 3 37 37 H 1.08999 * 109.47578 * 296.04333 * 17 16 15 38 38 H 1.08997 * 109.47340 * 56.05047 * 17 16 15 39 39 H 1.09006 * 109.46874 * 176.04798 * 17 16 15 40 40 H 1.07998 * 120.04182 * 359.97438 * 19 18 16 41 41 H 1.07994 * 119.96009 * 179.97438 * 20 19 18 42 42 H 1.08001 * 119.92834 * 180.28197 * 21 20 19 43 43 H 1.08002 * 119.96572 * 179.72711 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6856 1.8352 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1492 2.3908 -2.8774 8 7 5.3914 2.1846 -3.2568 9 14 3.0128 3.4364 -3.9285 10 1 3.1155 4.8565 -3.5065 11 1 3.4065 3.3142 -5.3552 12 1 1.6133 2.9697 -3.7594 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1673 15 6 1.9923 1.3058 2.4723 16 7 2.3110 2.2057 3.5890 17 6 3.7477 2.5094 3.6267 18 6 1.8811 1.6673 4.8040 19 6 2.3767 0.4440 5.2376 20 6 1.9491 -0.0856 6.4391 21 6 1.0328 0.6029 7.2132 22 6 0.5333 1.8178 6.7818 23 6 0.9567 2.3534 5.5810 24 7 0.4264 3.6571 5.1232 25 8 -0.3836 4.2586 5.8056 26 8 0.7999 4.1285 4.0641 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1412 -1.1382 34 1 5.7174 2.5751 -4.0827 35 1 2.6229 0.4186 2.5299 36 1 0.9445 1.0113 2.5303 37 1 4.3076 1.5946 3.8213 38 1 4.0561 2.9272 2.6684 39 1 3.9457 3.2318 4.4186 40 1 3.0950 -0.0925 4.6355 41 1 2.3337 -1.0367 6.7766 42 1 0.7035 0.1886 8.1546 43 1 -0.1855 2.3509 7.3865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266611434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:22 Heat of formation + Delta-G solvation = 0.550408 kcal Electronic energy + Delta-G solvation = -27861.046679 eV Core-core repulsion = 23910.154431 eV Total energy + Delta-G solvation = -3950.892248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -43.06907 -41.41072 -40.35188 -37.89926 -37.26081 -36.76542 -34.85079 -32.96142 -32.03800 -31.35450 -30.29507 -28.67597 -27.53832 -26.15986 -24.46028 -24.11419 -23.38134 -22.40314 -20.15742 -19.86340 -19.40199 -19.09558 -18.40126 -18.35303 -17.55817 -17.15130 -16.74251 -16.38503 -16.23388 -15.93859 -15.55453 -15.25036 -14.86678 -14.72077 -14.56287 -14.13340 -13.85596 -13.83354 -13.53913 -13.33117 -13.23066 -12.96038 -12.83272 -12.56467 -12.54755 -12.49602 -12.37830 -12.08700 -12.04648 -12.02514 -11.89548 -11.73116 -10.82508 -10.64191 -10.56589 -10.15607 -9.55691 -9.37827 -8.33868 -6.37570 -1.15139 -0.10247 0.40836 0.60627 1.31748 1.36879 1.43975 1.81954 2.05218 2.30886 2.31350 2.63682 3.01033 3.44768 3.55449 3.75958 3.85339 3.94251 3.99154 4.04535 4.09239 4.20896 4.31650 4.35661 4.40576 4.52977 4.60906 4.79557 4.84141 4.90381 4.95979 4.99372 5.00362 5.03549 5.12737 5.31621 5.35175 5.46923 5.49095 5.53988 5.67981 6.04443 6.25610 6.62993 6.65735 6.73125 7.23546 7.48106 8.82719 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.003516 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.017720 B = 7961.834125 C = 8284.166292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.602 5.602 4 C 0.228 3.772 5 C -0.530 4.530 6 H 0.033 0.967 7 C 0.014 3.986 8 N -0.943 5.943 9 Si 0.942 3.058 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.241 1.241 13 C 0.499 3.501 14 O -0.565 6.565 15 C 0.061 3.939 16 N -0.508 5.508 17 C 0.036 3.964 18 C 0.141 3.859 19 C -0.151 4.151 20 C -0.036 4.036 21 C -0.105 4.105 22 C -0.056 4.056 23 C -0.054 4.054 24 N 0.028 4.972 25 O -0.197 6.197 26 O -0.165 6.165 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.013 0.987 34 H 0.268 0.732 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.160 0.840 41 H 0.186 0.814 42 H 0.189 0.811 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.205 -13.085 23.420 29.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.335 5.335 4 C 0.105 3.895 5 C -0.569 4.569 6 H 0.052 0.948 7 C -0.184 4.184 8 N -0.584 5.584 9 Si 0.765 3.235 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.164 1.164 13 C 0.287 3.713 14 O -0.444 6.444 15 C -0.068 4.068 16 N -0.229 5.229 17 C -0.110 4.110 18 C 0.046 3.954 19 C -0.172 4.172 20 C -0.055 4.055 21 C -0.123 4.123 22 C -0.075 4.075 23 C -0.139 4.139 24 N 0.541 4.459 25 O -0.406 6.406 26 O -0.381 6.381 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.177 0.823 41 H 0.203 0.797 42 H 0.206 0.794 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.887 -12.599 23.389 28.711 hybrid contribution 0.437 0.890 -1.205 1.560 sum -10.451 -11.709 22.184 27.175 Atomic orbital electron populations 1.22169 0.94480 1.03605 1.01723 1.21774 0.95238 0.81156 1.04159 1.48031 1.64663 1.15186 1.05586 1.19247 0.94899 0.92828 0.82489 1.21531 0.96891 1.31875 1.06557 0.94826 1.25757 0.96573 0.97106 0.98949 1.70034 1.17203 1.46638 1.24505 0.85803 0.80575 0.79115 0.78007 1.20552 1.19861 1.16448 1.20884 0.77636 0.86757 0.86010 1.90657 1.46308 1.19970 1.87428 1.22013 1.04069 0.93602 0.87087 1.59048 1.19237 1.44603 1.00050 1.22441 0.84196 1.00845 1.03482 1.18818 0.93257 0.92891 0.90478 1.22112 1.01600 0.94185 0.99288 1.22034 0.92145 1.00327 0.90957 1.21752 0.96377 0.92136 1.02068 1.21408 0.98025 0.96663 0.91429 1.21565 1.05381 0.86383 1.00533 1.44025 0.98764 1.03064 1.00034 1.94422 1.29211 1.62113 1.54888 1.94775 1.62178 1.70777 1.10333 0.88445 0.92830 0.93629 0.90548 0.88428 0.93630 0.96904 0.92322 0.88569 0.86713 0.92609 0.91669 0.91683 0.82264 0.79672 0.79390 0.81935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 10.24 71.98 0.74 -2.88 16 2 C 0.10 2.79 5.93 86.38 0.51 3.30 16 3 N -0.60 -24.44 2.46 -826.17 -2.03 -26.47 16 4 C 0.23 11.33 4.23 85.64 0.36 11.69 16 5 C -0.53 -31.22 9.94 25.60 0.25 -30.96 16 6 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 7 C 0.01 0.85 5.47 84.65 0.46 1.31 16 8 N -0.94 -59.78 13.96 21.45 0.30 -59.49 16 9 Si 0.94 45.59 27.47 68.60 1.88 47.47 16 10 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.24 -10.61 6.54 99.48 0.65 -9.96 16 13 C 0.50 20.61 7.37 87.66 0.65 21.26 16 14 O -0.57 -29.48 13.91 -3.02 -0.04 -29.52 16 15 C 0.06 1.73 3.58 85.56 0.31 2.04 16 16 N -0.51 -15.30 2.35 -724.42 -1.70 -17.00 16 17 C 0.04 1.10 9.02 127.69 1.15 2.26 16 18 C 0.14 3.15 4.67 38.21 0.18 3.32 16 19 C -0.15 -1.87 8.66 22.40 0.19 -1.68 16 20 C -0.04 -0.19 10.04 22.25 0.22 0.04 16 21 C -0.11 -0.59 10.04 22.29 0.22 -0.37 16 22 C -0.06 -0.79 9.55 22.25 0.21 -0.58 16 23 C -0.05 -1.28 6.87 36.51 0.25 -1.03 16 24 N 0.03 0.93 4.45 -46.16 -0.21 0.72 16 25 O -0.20 -6.45 18.45 18.88 0.35 -6.10 16 26 O -0.17 -6.77 17.10 18.89 0.32 -6.45 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.18 7.22 -2.39 -0.02 1.16 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 31 H 0.10 2.06 6.44 -2.39 -0.02 2.04 16 32 H 0.05 2.10 7.13 -2.39 -0.02 2.09 16 33 H 0.01 0.70 6.85 -2.39 -0.02 0.69 16 34 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 35 H 0.10 2.07 6.73 -2.39 -0.02 2.06 16 36 H 0.11 2.80 7.10 -2.39 -0.02 2.78 16 37 H 0.06 1.31 7.34 -2.39 -0.02 1.29 16 38 H 0.06 2.60 5.82 -2.39 -0.01 2.59 16 39 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.16 1.48 7.14 -2.91 -0.02 1.46 16 41 H 0.19 -0.52 8.06 -2.91 -0.02 -0.55 16 42 H 0.19 -0.44 8.06 -2.91 -0.02 -0.46 16 43 H 0.16 1.94 7.61 -2.91 -0.02 1.92 16 Total: -1.00 -88.55 360.88 5.57 -82.98 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 0.97 Total: 6.14 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 5.72 Total: 7.72 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -3.64 Total: -102.24 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: 0.63 Total: -42.07 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Total: -88.55 5.57 -82.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266611434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.535 kcal (2) G-P(sol) polarization free energy of solvation -88.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds