Wall clock time and date at job start Tue Mar 31 2020 12:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47050 * 2 1 4 4 C 1.46498 * 119.99967 * 269.99759 * 3 2 1 5 5 C 1.50699 * 109.47260 * 270.00385 * 4 3 2 6 6 H 1.08008 * 119.99919 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00120 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99897 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99928 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46969 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46933 * 119.99987 * 9 7 5 12 12 H 1.48498 * 109.47072 * 240.00096 * 9 7 5 13 13 C 1.34782 * 120.00017 * 90.00092 * 3 2 1 14 14 O 1.21277 * 119.99539 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00111 * 359.97438 * 13 3 2 16 16 C 1.52995 * 109.47360 * 180.02562 * 15 13 3 17 17 N 1.46498 * 109.47265 * 179.97438 * 16 15 13 18 18 C 1.39678 * 119.99964 * 179.97438 * 17 16 15 19 19 C 1.38930 * 120.07548 * 5.87173 * 18 17 16 20 20 C 1.38079 * 119.92672 * 180.02562 * 19 18 17 21 21 C 1.38311 * 120.07435 * 359.73332 * 20 19 18 22 22 C 1.38263 * 120.14749 * 0.54451 * 21 20 19 23 23 C 1.38129 * 120.07332 * 359.45253 * 22 21 20 24 24 N 1.48004 * 120.03383 * 180.29845 * 23 22 21 25 25 O 1.21792 * 120.00120 * 37.44481 * 24 23 22 26 26 O 1.21804 * 119.99268 * 217.44600 * 24 23 22 27 27 H 1.08997 * 109.46988 * 300.00333 * 1 2 3 28 28 H 1.08998 * 109.46799 * 59.99670 * 1 2 3 29 29 H 1.08996 * 109.47415 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46988 * 239.99667 * 2 1 3 31 31 H 1.08998 * 109.46869 * 119.99778 * 2 1 3 32 32 H 1.09000 * 109.46895 * 29.99983 * 4 3 2 33 33 H 1.09000 * 109.47183 * 150.00490 * 4 3 2 34 34 H 0.96999 * 119.99943 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47309 * 59.99423 * 15 13 3 36 36 H 1.09001 * 109.47052 * 300.00345 * 15 13 3 37 37 H 1.09008 * 109.47223 * 59.99664 * 16 15 13 38 38 H 1.09001 * 109.47228 * 300.00125 * 16 15 13 39 39 H 0.96993 * 120.00461 * 0.02562 * 17 16 15 40 40 H 1.08004 * 120.03871 * 0.02562 * 19 18 17 41 41 H 1.08003 * 119.96379 * 179.97438 * 20 19 18 42 42 H 1.08001 * 119.92136 * 180.27651 * 21 20 19 43 43 H 1.07993 * 119.95747 * 179.72974 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3895 -2.8780 8 7 3.3489 3.1248 -3.6186 9 14 5.9136 2.0965 -3.4169 10 1 6.6015 1.2423 -2.4157 11 1 5.9215 1.4168 -4.7372 12 1 6.6205 3.3979 -3.5257 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9913 1.3064 2.4723 16 6 2.3222 2.2439 3.6352 17 7 2.0770 1.5537 4.9039 18 6 2.3097 2.2122 6.1136 19 6 2.6560 3.5577 6.1185 20 6 2.8858 4.2054 7.3160 21 6 2.7663 3.5178 8.5101 22 6 2.4275 2.1773 8.5085 23 6 2.1961 1.5232 7.3141 24 7 1.8270 0.0900 7.3138 25 8 1.0962 -0.3508 8.1827 26 8 2.2542 -0.6486 6.4446 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 3.6749 3.5152 -4.4445 35 1 2.6211 0.4186 2.5302 36 1 0.9432 1.0126 2.5298 37 1 1.6921 3.1315 3.5771 38 1 3.3702 2.5381 3.5779 39 1 1.7537 0.6392 4.9040 40 1 2.7453 4.0963 5.1866 41 1 3.1555 5.2513 7.3205 42 1 2.9423 4.0280 9.4455 43 1 2.3393 1.6423 9.4425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267354723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:59 Heat of formation + Delta-G solvation = -14.822144 kcal Electronic energy + Delta-G solvation = -26535.262604 eV Core-core repulsion = 22583.703752 eV Total energy + Delta-G solvation = -3951.558851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.35393 -39.93337 -39.23845 -36.89918 -36.20901 -35.37862 -32.95739 -32.35363 -31.71731 -30.17248 -29.15200 -27.17229 -26.41463 -24.66241 -23.10266 -22.82970 -22.40813 -21.57490 -19.49337 -18.85057 -18.49019 -17.89729 -17.41899 -16.69264 -16.44485 -15.95207 -15.75032 -15.43658 -15.17624 -14.62937 -14.41113 -14.28341 -14.08820 -13.48432 -13.46154 -12.92149 -12.72447 -12.43069 -12.18003 -12.01895 -11.91363 -11.75413 -11.70092 -11.55532 -11.27886 -11.24270 -11.14807 -10.94790 -10.80603 -10.60359 -10.52854 -10.18742 -9.83271 -9.68124 -9.08427 -8.49056 -8.12014 -7.76918 -6.09871 -4.14757 -0.10968 0.88851 1.05002 1.31175 2.75928 3.10336 3.25038 3.26223 3.34194 3.38496 3.86564 4.07379 4.37993 4.40386 4.60494 4.65974 4.70869 4.85287 4.95916 4.99505 5.19233 5.22708 5.25159 5.43277 5.46710 5.55783 5.63009 5.67659 5.72777 5.79768 5.91642 5.99363 6.03533 6.17141 6.23678 6.42022 6.61954 6.97037 7.10651 7.36520 7.45402 7.50115 7.86182 8.17004 8.30432 8.81389 8.96886 9.50653 10.98294 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.002698 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.141911 B =10375.802719 C =11155.166869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.593 5.593 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.511 3.489 14 O -0.543 6.543 15 C -0.155 4.155 16 C 0.132 3.868 17 N -0.725 5.725 18 C 0.284 3.716 19 C -0.194 4.194 20 C -0.023 4.023 21 C -0.178 4.178 22 C -0.018 4.018 23 C -0.126 4.126 24 N 0.040 4.960 25 O -0.160 6.160 26 O -0.181 6.181 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.409 0.591 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 -2.118 21.587 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.325 5.325 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.297 3.703 14 O -0.421 6.421 15 C -0.196 4.196 16 C 0.008 3.992 17 N -0.353 5.353 18 C 0.172 3.828 19 C -0.217 4.217 20 C -0.043 4.043 21 C -0.199 4.199 22 C -0.037 4.037 23 C -0.215 4.215 24 N 0.555 4.445 25 O -0.378 6.378 26 O -0.390 6.390 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.249 0.751 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.212 -0.686 21.100 21.527 hybrid contribution 0.700 -1.031 -0.466 1.330 sum -3.511 -1.717 20.634 21.001 Atomic orbital electron populations 1.22218 0.96707 1.01564 1.02267 1.21457 0.93554 0.84071 1.02910 1.48253 1.63220 1.13310 1.07690 1.19301 0.96392 0.93628 0.78018 1.21461 0.96869 1.31932 1.06307 0.92398 1.24939 0.97911 0.94892 0.96364 1.69938 1.35612 1.33466 1.14320 0.86442 0.84547 0.78076 0.78359 1.19784 1.20929 1.20857 1.19901 0.78796 0.86814 0.84804 1.90683 1.46147 1.18037 1.87244 1.21854 1.03994 1.00233 0.93489 1.21307 1.02723 0.95159 0.79971 1.45406 1.69464 1.17468 1.02933 1.17494 0.89479 0.91829 0.84042 1.20910 1.08695 0.91571 1.00543 1.21347 0.91213 1.00276 0.91433 1.20907 1.06796 0.93062 0.99169 1.20687 0.92750 0.94808 0.95463 1.20462 1.24005 0.81186 0.95859 1.43522 0.98185 1.03203 0.99542 1.94525 1.31996 1.79683 1.31568 1.94489 1.56656 1.56083 1.31748 0.93184 0.91982 0.92022 0.89780 0.91585 0.94925 0.93843 0.92730 0.88354 0.88866 0.90406 0.90030 0.75135 0.83326 0.84148 0.84190 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.10 1.58 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -11.84 2.46 -175.06 -0.43 -12.27 16 4 C 0.25 6.21 5.16 -5.20 -0.03 6.18 16 5 C -0.53 -14.59 9.39 -34.44 -0.32 -14.92 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 9 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.51 9.75 7.67 -10.99 -0.08 9.67 16 14 O -0.54 -12.56 15.56 5.56 0.09 -12.48 16 15 C -0.16 -2.04 4.37 -27.89 -0.12 -2.16 16 16 C 0.13 1.62 4.25 -4.05 -0.02 1.61 16 17 N -0.72 -8.24 5.51 -58.63 -0.32 -8.57 16 18 C 0.28 3.13 6.61 -83.79 -0.55 2.58 16 19 C -0.19 -1.79 9.32 -39.38 -0.37 -2.16 16 20 C -0.02 -0.16 10.04 -39.61 -0.40 -0.56 16 21 C -0.18 -1.19 10.04 -39.55 -0.40 -1.59 16 22 C -0.02 -0.15 9.66 -39.61 -0.38 -0.53 16 23 C -0.13 -1.41 6.51 -79.75 -0.52 -1.93 16 24 N 0.04 0.52 4.29 34.06 0.15 0.66 16 25 O -0.16 -2.15 18.95 -29.46 -0.56 -2.71 16 26 O -0.18 -2.52 16.75 -29.46 -0.49 -3.01 16 27 H 0.05 0.60 7.22 -51.93 -0.37 0.22 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 32 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.10 1.18 7.40 -51.93 -0.38 0.79 16 36 H 0.09 1.04 7.18 -51.93 -0.37 0.67 16 37 H 0.08 0.97 7.69 -51.92 -0.40 0.57 16 38 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 39 H 0.41 4.69 6.07 -40.82 -0.25 4.45 16 40 H 0.15 1.32 6.74 -52.48 -0.35 0.97 16 41 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 42 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.14 1.00 8.01 -52.49 -0.42 0.58 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -33.12 369.21 -8.99 -42.12 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.77 Total: 2.01 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.93 Total: -2.43 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.13 Total: -45.59 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.96 Total: -18.20 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.12 -8.99 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267354723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.294 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds