Wall clock time and date at job start Tue Mar 31 2020 12:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47050 * 2 1 4 4 C 1.46498 * 119.99967 * 269.99759 * 3 2 1 5 5 C 1.50699 * 109.47260 * 270.00385 * 4 3 2 6 6 H 1.08008 * 119.99919 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00120 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99897 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99928 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46969 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46933 * 119.99987 * 9 7 5 12 12 H 1.48498 * 109.47072 * 240.00096 * 9 7 5 13 13 C 1.34782 * 120.00017 * 90.00092 * 3 2 1 14 14 O 1.21277 * 119.99539 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00111 * 359.97438 * 13 3 2 16 16 C 1.52995 * 109.47360 * 180.02562 * 15 13 3 17 17 N 1.46498 * 109.47265 * 179.97438 * 16 15 13 18 18 C 1.39678 * 119.99964 * 179.97438 * 17 16 15 19 19 C 1.38930 * 120.07548 * 5.87173 * 18 17 16 20 20 C 1.38079 * 119.92672 * 180.02562 * 19 18 17 21 21 C 1.38311 * 120.07435 * 359.73332 * 20 19 18 22 22 C 1.38263 * 120.14749 * 0.54451 * 21 20 19 23 23 C 1.38129 * 120.07332 * 359.45253 * 22 21 20 24 24 N 1.48004 * 120.03383 * 180.29845 * 23 22 21 25 25 O 1.21792 * 120.00120 * 37.44481 * 24 23 22 26 26 O 1.21804 * 119.99268 * 217.44600 * 24 23 22 27 27 H 1.08997 * 109.46988 * 300.00333 * 1 2 3 28 28 H 1.08998 * 109.46799 * 59.99670 * 1 2 3 29 29 H 1.08996 * 109.47415 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46988 * 239.99667 * 2 1 3 31 31 H 1.08998 * 109.46869 * 119.99778 * 2 1 3 32 32 H 1.09000 * 109.46895 * 29.99983 * 4 3 2 33 33 H 1.09000 * 109.47183 * 150.00490 * 4 3 2 34 34 H 0.96999 * 119.99943 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47309 * 59.99423 * 15 13 3 36 36 H 1.09001 * 109.47052 * 300.00345 * 15 13 3 37 37 H 1.09008 * 109.47223 * 59.99664 * 16 15 13 38 38 H 1.09001 * 109.47228 * 300.00125 * 16 15 13 39 39 H 0.96993 * 120.00461 * 0.02562 * 17 16 15 40 40 H 1.08004 * 120.03871 * 0.02562 * 19 18 17 41 41 H 1.08003 * 119.96379 * 179.97438 * 20 19 18 42 42 H 1.08001 * 119.92136 * 180.27651 * 21 20 19 43 43 H 1.07993 * 119.95747 * 179.72974 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3895 -2.8780 8 7 3.3489 3.1248 -3.6186 9 14 5.9136 2.0965 -3.4169 10 1 6.6015 1.2423 -2.4157 11 1 5.9215 1.4168 -4.7372 12 1 6.6205 3.3979 -3.5257 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9913 1.3064 2.4723 16 6 2.3222 2.2439 3.6352 17 7 2.0770 1.5537 4.9039 18 6 2.3097 2.2122 6.1136 19 6 2.6560 3.5577 6.1185 20 6 2.8858 4.2054 7.3160 21 6 2.7663 3.5178 8.5101 22 6 2.4275 2.1773 8.5085 23 6 2.1961 1.5232 7.3141 24 7 1.8270 0.0900 7.3138 25 8 1.0962 -0.3508 8.1827 26 8 2.2542 -0.6486 6.4446 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 3.6749 3.5152 -4.4445 35 1 2.6211 0.4186 2.5302 36 1 0.9432 1.0126 2.5298 37 1 1.6921 3.1315 3.5771 38 1 3.3702 2.5381 3.5779 39 1 1.7537 0.6392 4.9040 40 1 2.7453 4.0963 5.1866 41 1 3.1555 5.2513 7.3205 42 1 2.9423 4.0280 9.4455 43 1 2.3393 1.6423 9.4425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267354723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:58 Heat of formation + Delta-G solvation = -34.658898 kcal Electronic energy + Delta-G solvation = -26536.122790 eV Core-core repulsion = 22583.703752 eV Total energy + Delta-G solvation = -3952.419038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.27076 -40.97901 -40.45337 -37.83307 -37.24747 -36.83607 -34.94967 -33.24623 -32.63629 -31.59428 -30.13325 -28.86391 -27.29869 -25.93243 -24.64065 -24.00005 -23.28726 -22.57210 -20.43476 -19.84273 -19.73331 -18.84230 -18.67285 -18.33060 -17.79491 -17.18721 -16.89033 -16.76423 -16.17815 -15.84128 -15.58628 -15.23497 -15.13077 -14.71177 -14.57019 -14.36081 -14.02776 -13.59341 -13.34624 -13.28288 -13.22827 -12.95340 -12.75585 -12.71525 -12.69981 -12.54069 -12.43850 -12.28788 -12.17861 -12.06282 -11.88400 -11.69809 -11.35944 -10.68975 -10.66140 -10.51661 -9.47508 -8.89727 -8.23991 -6.38566 -0.98071 0.18561 0.28521 0.46180 1.35877 1.37721 1.49528 1.75794 1.82563 2.33640 2.45206 2.50587 3.05957 3.34708 3.56517 3.70533 3.82261 3.93953 4.00929 4.08166 4.10202 4.22382 4.37581 4.43487 4.55394 4.59371 4.72839 4.74338 4.82496 4.94538 4.96755 5.04311 5.07227 5.20976 5.24849 5.31186 5.36742 5.48515 5.56254 5.82125 5.82832 6.04744 6.25414 6.50787 6.67650 6.76431 7.25906 7.42486 8.83310 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.002698 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.141911 B =10375.802719 C =11155.166869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.261 3.739 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.281 1.281 13 C 0.503 3.497 14 O -0.593 6.593 15 C -0.138 4.138 16 C 0.144 3.856 17 N -0.727 5.727 18 C 0.265 3.735 19 C -0.207 4.207 20 C -0.012 4.012 21 C -0.162 4.162 22 C -0.025 4.025 23 C -0.143 4.143 24 N 0.042 4.958 25 O -0.173 6.173 26 O -0.205 6.205 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.021 0.979 33 H -0.001 1.001 34 H 0.267 0.733 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.409 0.591 40 H 0.147 0.853 41 H 0.174 0.826 42 H 0.177 0.823 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 -2.495 23.808 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.332 5.332 4 C 0.140 3.860 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.196 1.196 12 H -0.207 1.207 13 C 0.291 3.709 14 O -0.474 6.474 15 C -0.178 4.178 16 C 0.020 3.980 17 N -0.356 5.356 18 C 0.154 3.846 19 C -0.230 4.230 20 C -0.031 4.031 21 C -0.182 4.182 22 C -0.044 4.044 23 C -0.232 4.232 24 N 0.553 4.447 25 O -0.390 6.390 26 O -0.410 6.410 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.039 0.961 33 H 0.017 0.983 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.248 0.752 40 H 0.164 0.836 41 H 0.191 0.809 42 H 0.194 0.806 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.649 -1.128 23.347 23.657 hybrid contribution 0.500 -0.800 -1.061 1.420 sum -3.149 -1.928 22.285 22.589 Atomic orbital electron populations 1.22155 0.94608 1.03498 1.01706 1.21770 0.95268 0.81355 1.04064 1.48264 1.63530 1.15078 1.06287 1.18720 0.95266 0.91634 0.80376 1.21740 0.97880 1.31894 1.06522 0.92828 1.25845 1.02321 0.94505 0.96444 1.70053 1.37662 1.34292 1.14814 0.85379 0.79105 0.78022 0.78369 1.19134 1.19566 1.20694 1.20870 0.77336 0.86421 0.86236 1.90651 1.48212 1.20449 1.88118 1.21743 1.06079 1.00049 0.89893 1.21041 1.01764 0.94874 0.80323 1.45214 1.70319 1.17390 1.02682 1.17733 0.90506 0.92596 0.83762 1.21095 1.09209 0.91039 1.01672 1.21791 0.89089 1.01708 0.90542 1.21371 1.04263 0.92065 1.00539 1.21048 0.92544 0.95767 0.95085 1.20731 1.25474 0.80007 0.96969 1.43812 0.97742 1.04006 0.99094 1.94500 1.32350 1.80315 1.31797 1.94469 1.57302 1.56984 1.32254 0.92077 0.94232 0.88767 0.90982 0.88055 0.96085 0.98253 0.92407 0.86401 0.86095 0.90887 0.91450 0.75235 0.83555 0.80904 0.80562 0.82511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.24 71.98 0.74 -3.11 16 2 C 0.10 2.85 5.93 86.38 0.51 3.36 16 3 N -0.60 -24.40 2.46 -826.17 -2.03 -26.42 16 4 C 0.26 13.85 5.16 85.63 0.44 14.29 16 5 C -0.54 -30.84 9.39 25.60 0.24 -30.60 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.45 5.46 84.66 0.46 0.91 16 8 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 9 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 C 0.50 19.44 7.67 87.65 0.67 20.12 16 14 O -0.59 -28.59 15.56 -3.02 -0.05 -28.64 16 15 C -0.14 -3.45 4.37 29.84 0.13 -3.32 16 16 C 0.14 3.50 4.25 86.38 0.37 3.87 16 17 N -0.73 -16.07 5.51 -339.42 -1.87 -17.94 16 18 C 0.26 5.61 6.61 38.21 0.25 5.86 16 19 C -0.21 -3.53 9.32 22.40 0.21 -3.32 16 20 C -0.01 -0.13 10.04 22.25 0.22 0.09 16 21 C -0.16 -1.55 10.04 22.29 0.22 -1.32 16 22 C -0.03 -0.37 9.66 22.25 0.21 -0.16 16 23 C -0.14 -3.04 6.51 36.51 0.24 -2.80 16 24 N 0.04 1.08 4.29 -46.16 -0.20 0.88 16 25 O -0.17 -4.59 18.95 18.90 0.36 -4.24 16 26 O -0.21 -5.68 16.75 18.88 0.32 -5.37 16 27 H 0.06 1.32 7.22 -2.39 -0.02 1.30 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 31 H 0.10 2.25 6.44 -2.39 -0.02 2.24 16 32 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 33 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 34 H 0.27 14.99 8.31 -92.71 -0.77 14.21 16 35 H 0.12 2.55 7.40 -2.39 -0.02 2.53 16 36 H 0.12 2.40 7.18 -2.39 -0.02 2.38 16 37 H 0.07 1.83 7.69 -2.38 -0.02 1.82 16 38 H 0.07 1.82 8.09 -2.39 -0.02 1.80 16 39 H 0.41 9.05 6.07 -92.71 -0.56 8.49 16 40 H 0.15 2.52 6.74 -2.91 -0.02 2.50 16 41 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 43 H 0.16 1.82 8.01 -2.91 -0.02 1.80 16 Total: -1.00 -76.17 369.21 4.24 -71.93 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.47 Total: 14.78 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 4.92 Total: 3.87 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -3.81 Total: -98.92 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: 0.63 Total: -38.24 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -76.17 4.24 -71.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267354723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.275 kcal (2) G-P(sol) polarization free energy of solvation -76.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds