Wall clock time and date at job start Tue Mar 31 2020 13:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 119.99948 * 2 1 4 4 O 1.21588 * 120.00139 * 184.67427 * 3 2 1 5 5 C 1.47634 * 120.00156 * 4.67286 * 3 2 1 6 6 C 1.40018 * 119.89410 * 22.26664 * 5 3 2 7 7 C 1.36315 * 120.10572 * 179.75918 * 6 5 3 8 8 C 1.40894 * 119.89445 * 0.51321 * 7 6 5 9 9 C 1.41100 * 120.10667 * 179.72002 * 8 7 6 10 10 H 1.08005 * 120.00206 * 209.02771 * 9 8 7 11 11 C 1.40229 * 120.00134 * 29.02537 * 9 8 7 12 12 N 1.30646 * 120.00092 * 10.23894 * 11 9 8 13 13 Si 1.86802 * 120.00289 * 190.23877 * 11 9 8 14 14 H 1.48494 * 109.47158 * 89.99959 * 13 11 9 15 15 H 1.48498 * 109.47302 * 210.00316 * 13 11 9 16 16 H 1.48508 * 109.46923 * 330.00011 * 13 11 9 17 17 C 1.40892 * 119.78924 * 359.73865 * 8 7 6 18 18 C 1.36319 * 119.89330 * 359.97438 * 17 8 7 19 19 C 1.46501 * 119.99949 * 180.02562 * 2 1 3 20 20 C 1.54349 * 110.82568 * 59.99478 * 19 2 1 21 21 C 1.51368 * 105.25507 * 215.47692 * 20 19 2 22 22 C 1.38491 * 130.39243 * 197.13739 * 21 20 19 23 23 C 1.38097 * 120.21936 * 180.02562 * 22 21 20 24 24 C 1.38255 * 119.93221 * 0.02562 * 23 22 21 25 25 C 1.38097 * 119.93610 * 359.97438 * 24 23 22 26 26 C 1.38224 * 109.75960 * 17.14293 * 21 20 19 27 27 C 1.51368 * 109.75783 * 359.97438 * 26 21 20 28 28 H 1.09000 * 109.46968 * 264.49772 * 1 2 3 29 29 H 1.09000 * 109.47051 * 24.49546 * 1 2 3 30 30 H 1.08999 * 109.47655 * 144.49726 * 1 2 3 31 31 H 1.08000 * 119.94556 * 0.02562 * 6 5 3 32 32 H 1.08004 * 120.05406 * 180.22818 * 7 6 5 33 33 H 0.96997 * 120.00263 * 180.02562 * 12 11 9 34 34 H 1.07997 * 120.05409 * 179.97438 * 17 8 7 35 35 H 1.07998 * 119.94434 * 179.97438 * 18 17 8 36 36 H 1.09000 * 110.88404 * 183.51248 * 19 2 1 37 37 H 1.08998 * 110.30106 * 96.50631 * 20 19 2 38 38 H 1.08997 * 110.29866 * 334.45233 * 20 19 2 39 39 H 1.08002 * 119.89337 * 359.97438 * 22 21 20 40 40 H 1.08004 * 120.03725 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.03141 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.89577 * 179.97438 * 25 24 23 43 43 H 1.09006 * 110.30339 * 101.73653 * 27 26 21 44 44 H 1.08997 * 110.30327 * 223.79034 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1690 -0.0858 5 6 1.4044 2.4436 0.1042 6 6 0.1184 2.4656 0.6576 7 6 -0.5617 3.6425 0.7603 8 6 0.0271 4.8364 0.2987 9 6 -0.6753 6.0562 0.3975 10 1 -0.4927 6.8440 -0.3185 11 6 -1.6103 6.2457 1.4252 12 7 -1.6897 5.3833 2.4033 13 14 -2.7425 7.7313 1.3957 14 1 -3.9881 7.3898 0.6630 15 1 -3.0789 8.1250 2.7875 16 1 -2.0603 8.8601 0.7132 17 6 1.3192 4.8084 -0.2623 18 6 1.9939 3.6275 -0.3555 19 6 2.1975 -1.2687 -0.0006 20 6 1.8471 -2.1041 -1.2502 21 6 1.8599 -3.5439 -0.7833 22 6 1.9299 -4.7219 -1.5081 23 6 1.9264 -5.9398 -0.8572 24 6 1.8524 -5.9843 0.5227 25 6 1.7825 -4.8108 1.2473 26 6 1.7868 -3.5884 0.5963 27 6 1.7205 -2.1815 1.1508 28 1 -0.3633 -0.0985 1.0229 29 1 -0.3633 0.9352 -0.4261 30 1 -0.3634 -0.8366 -0.5968 31 1 -0.3337 1.5494 1.0075 32 1 -1.5521 3.6591 1.1907 33 1 -2.3368 5.5141 3.1140 34 1 1.7744 5.7209 -0.6179 35 1 2.9842 3.6050 -0.7857 36 1 3.2721 -1.0970 0.0619 37 1 2.5949 -1.9523 -2.0285 38 1 0.8575 -1.8351 -1.6197 39 1 1.9865 -4.6880 -2.5861 40 1 1.9815 -6.8567 -1.4254 41 1 1.8500 -6.9360 1.0334 42 1 1.7243 -4.8464 2.3251 43 1 0.6963 -1.9324 1.4288 44 1 2.3802 -2.0833 2.0129 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270265557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:42 Heat of formation + Delta-G solvation = 27.865942 kcal Electronic energy + Delta-G solvation = -25679.982546 eV Core-core repulsion = 22141.124052 eV Total energy + Delta-G solvation = -3538.858494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.53597 -39.21721 -37.24707 -36.13395 -34.14531 -33.54764 -31.55214 -30.39477 -29.53990 -28.35974 -27.40011 -26.68706 -25.79167 -22.88389 -21.71308 -21.07067 -21.00814 -20.40770 -18.87219 -17.50488 -16.73070 -16.42252 -16.02520 -15.53960 -15.32898 -15.29853 -14.51592 -14.29751 -13.99362 -13.45664 -13.38402 -13.24917 -13.08338 -12.97300 -12.67373 -12.52983 -12.40228 -12.21621 -11.91477 -11.56528 -11.41942 -11.32454 -11.30141 -11.20213 -11.03022 -10.91224 -10.79970 -10.56163 -10.00174 -9.47019 -9.40666 -8.95406 -8.94210 -8.60758 -8.29566 -7.66890 -7.49191 -6.96182 -4.61607 1.21831 1.24924 2.21829 2.92675 2.95775 2.98973 3.00187 3.39611 3.61384 3.74254 3.78387 4.33100 4.54611 4.57762 4.85184 4.87929 5.01369 5.04199 5.14286 5.33739 5.39826 5.49300 5.50827 5.63002 5.65570 5.70779 5.76182 5.79063 5.96183 6.04713 6.08226 6.15918 6.24488 6.29325 6.29524 6.35553 6.54442 6.76979 6.84289 6.86331 6.91005 7.05779 7.13188 7.44959 7.58835 7.78125 7.86226 8.02983 8.09047 8.41582 8.64778 8.75132 8.95265 9.95355 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.002482 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.475655 B =11280.373548 C =11812.689596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.614 5.614 3 C 0.575 3.425 4 O -0.570 6.570 5 C -0.277 4.277 6 C -0.088 4.088 7 C -0.173 4.173 8 C 0.128 3.872 9 C -0.446 4.446 10 H 0.083 0.917 11 C 0.072 3.928 12 N -0.782 5.782 13 Si 0.916 3.084 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.260 1.260 17 C -0.234 4.234 18 C -0.027 4.027 19 C 0.147 3.853 20 C -0.096 4.096 21 C -0.090 4.090 22 C -0.108 4.108 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.107 4.107 26 C -0.090 4.090 27 C -0.096 4.096 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.285 0.715 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 -16.513 -2.735 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.347 5.347 3 C 0.371 3.629 4 O -0.451 6.451 5 C -0.281 4.281 6 C -0.106 4.106 7 C -0.193 4.193 8 C 0.125 3.875 9 C -0.475 4.475 10 H 0.101 0.899 11 C -0.148 4.148 12 N -0.406 5.406 13 Si 0.740 3.260 14 H -0.191 1.191 15 H -0.201 1.201 16 H -0.184 1.184 17 C -0.253 4.253 18 C -0.046 4.046 19 C 0.043 3.957 20 C -0.134 4.134 21 C -0.090 4.090 22 C -0.126 4.126 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.125 4.125 26 C -0.090 4.090 27 C -0.134 4.134 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.133 0.867 32 H 0.141 0.859 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.106 0.894 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.336 -16.521 -2.545 16.719 hybrid contribution -0.627 0.489 0.220 0.825 sum -0.291 -16.031 -2.325 16.201 Atomic orbital electron populations 1.22457 0.80211 1.03976 1.00950 1.47591 1.06525 1.04896 1.75651 1.18747 0.86693 0.83522 0.73924 1.90635 1.14496 1.87483 1.52483 1.18864 0.98165 0.91691 1.19375 1.21356 0.93400 0.98304 0.97553 1.21090 1.01008 0.91086 1.06072 1.17835 0.89778 0.93104 0.86811 1.19815 1.17152 1.00164 1.10330 0.89915 1.26062 0.96383 0.98090 0.94237 1.69709 1.29460 1.34041 1.07427 0.86172 0.80240 0.81063 0.78532 1.19056 1.20052 1.18395 1.20763 0.96179 0.96273 1.12109 1.20340 0.97200 0.91668 0.95400 1.21506 0.98453 0.82927 0.92835 1.21462 1.03090 0.89951 0.98906 1.20550 0.99359 0.94834 0.94297 1.20626 1.00876 0.91339 0.99717 1.21010 1.01081 0.97387 0.94629 1.21010 1.01062 0.97815 0.94219 1.20629 1.00836 0.91244 0.99821 1.20541 0.99380 0.94646 0.94459 1.21466 1.02922 0.90076 0.98902 0.92682 0.87827 0.92573 0.86711 0.85929 0.90394 0.88390 0.88374 0.87177 0.90287 0.89463 0.86295 0.86053 0.86047 0.86272 0.89448 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 7.42 59.85 0.44 1.38 16 2 N -0.61 -10.19 2.89 -173.43 -0.50 -10.69 16 3 C 0.57 12.08 7.51 -12.43 -0.09 11.98 16 4 O -0.57 -13.45 15.94 5.29 0.08 -13.37 16 5 C -0.28 -6.19 5.58 -104.73 -0.58 -6.78 16 6 C -0.09 -1.88 7.47 -39.61 -0.30 -2.18 16 7 C -0.17 -4.15 8.60 -39.27 -0.34 -4.48 16 8 C 0.13 3.22 5.55 -106.80 -0.59 2.62 16 9 C -0.45 -11.03 9.05 -37.75 -0.34 -11.37 16 10 H 0.08 1.96 7.87 -52.48 -0.41 1.54 16 11 C 0.07 1.68 5.26 -17.31 -0.09 1.59 16 12 N -0.78 -18.77 10.81 55.56 0.60 -18.17 16 13 Si 0.92 17.35 29.57 -169.99 -5.03 12.32 16 14 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 15 H -0.28 -5.14 7.11 56.52 0.40 -4.73 16 16 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 17 C -0.23 -5.60 9.73 -39.27 -0.38 -5.98 16 18 C -0.03 -0.62 9.52 -39.61 -0.38 -1.00 16 19 C 0.15 2.13 3.48 -66.45 -0.23 1.90 16 20 C -0.10 -1.19 6.35 -26.85 -0.17 -1.37 16 21 C -0.09 -1.07 6.14 -104.21 -0.64 -1.71 16 22 C -0.11 -1.12 10.04 -39.54 -0.40 -1.51 16 23 C -0.12 -1.14 10.05 -39.63 -0.40 -1.54 16 24 C -0.12 -1.15 10.05 -39.63 -0.40 -1.54 16 25 C -0.11 -1.12 10.04 -39.54 -0.40 -1.52 16 26 C -0.09 -1.07 6.14 -104.20 -0.64 -1.71 16 27 C -0.10 -1.19 6.39 -26.78 -0.17 -1.36 16 28 H 0.05 0.72 6.73 -51.93 -0.35 0.37 16 29 H 0.10 1.62 4.95 -51.93 -0.26 1.36 16 30 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 31 H 0.12 2.11 4.14 -52.49 -0.22 1.89 16 32 H 0.12 2.99 6.20 -52.48 -0.33 2.66 16 33 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 34 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 35 H 0.10 2.20 7.80 -52.49 -0.41 1.79 16 36 H 0.11 1.81 7.04 -51.93 -0.37 1.44 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.05 6.31 -51.93 -0.33 0.72 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 41 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.09 1.05 6.64 -51.93 -0.34 0.70 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -28.32 353.89 -11.04 -39.37 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.44 Total: 9.78 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -6.09 Total: -24.57 kcal Atomic # 7 Polarization: -28.96 SS G_CDS: 0.10 Total: -28.86 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.37 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.32 -11.04 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270265557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.231 kcal (2) G-P(sol) polarization free energy of solvation -28.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds