Wall clock time and date at job start Tue Mar 31 2020 13:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 119.99948 * 2 1 4 4 O 1.21588 * 120.00139 * 184.67427 * 3 2 1 5 5 C 1.47634 * 120.00156 * 4.67286 * 3 2 1 6 6 C 1.40018 * 119.89410 * 22.26664 * 5 3 2 7 7 C 1.36315 * 120.10572 * 179.75918 * 6 5 3 8 8 C 1.40894 * 119.89445 * 0.51321 * 7 6 5 9 9 C 1.41100 * 120.10667 * 179.72002 * 8 7 6 10 10 H 1.08005 * 120.00206 * 209.02771 * 9 8 7 11 11 C 1.40229 * 120.00134 * 29.02537 * 9 8 7 12 12 N 1.30646 * 120.00092 * 10.23894 * 11 9 8 13 13 Si 1.86802 * 120.00289 * 190.23877 * 11 9 8 14 14 H 1.48494 * 109.47158 * 89.99959 * 13 11 9 15 15 H 1.48498 * 109.47302 * 210.00316 * 13 11 9 16 16 H 1.48508 * 109.46923 * 330.00011 * 13 11 9 17 17 C 1.40892 * 119.78924 * 359.73865 * 8 7 6 18 18 C 1.36319 * 119.89330 * 359.97438 * 17 8 7 19 19 C 1.46501 * 119.99949 * 180.02562 * 2 1 3 20 20 C 1.54349 * 110.82568 * 59.99478 * 19 2 1 21 21 C 1.51368 * 105.25507 * 215.47692 * 20 19 2 22 22 C 1.38491 * 130.39243 * 197.13739 * 21 20 19 23 23 C 1.38097 * 120.21936 * 180.02562 * 22 21 20 24 24 C 1.38255 * 119.93221 * 0.02562 * 23 22 21 25 25 C 1.38097 * 119.93610 * 359.97438 * 24 23 22 26 26 C 1.38224 * 109.75960 * 17.14293 * 21 20 19 27 27 C 1.51368 * 109.75783 * 359.97438 * 26 21 20 28 28 H 1.09000 * 109.46968 * 264.49772 * 1 2 3 29 29 H 1.09000 * 109.47051 * 24.49546 * 1 2 3 30 30 H 1.08999 * 109.47655 * 144.49726 * 1 2 3 31 31 H 1.08000 * 119.94556 * 0.02562 * 6 5 3 32 32 H 1.08004 * 120.05406 * 180.22818 * 7 6 5 33 33 H 0.96997 * 120.00263 * 180.02562 * 12 11 9 34 34 H 1.07997 * 120.05409 * 179.97438 * 17 8 7 35 35 H 1.07998 * 119.94434 * 179.97438 * 18 17 8 36 36 H 1.09000 * 110.88404 * 183.51248 * 19 2 1 37 37 H 1.08998 * 110.30106 * 96.50631 * 20 19 2 38 38 H 1.08997 * 110.29866 * 334.45233 * 20 19 2 39 39 H 1.08002 * 119.89337 * 359.97438 * 22 21 20 40 40 H 1.08004 * 120.03725 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.03141 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.89577 * 179.97438 * 25 24 23 43 43 H 1.09006 * 110.30339 * 101.73653 * 27 26 21 44 44 H 1.08997 * 110.30327 * 223.79034 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1690 -0.0858 5 6 1.4044 2.4436 0.1042 6 6 0.1184 2.4656 0.6576 7 6 -0.5617 3.6425 0.7603 8 6 0.0271 4.8364 0.2987 9 6 -0.6753 6.0562 0.3975 10 1 -0.4927 6.8440 -0.3185 11 6 -1.6103 6.2457 1.4252 12 7 -1.6897 5.3833 2.4033 13 14 -2.7425 7.7313 1.3957 14 1 -3.9881 7.3898 0.6630 15 1 -3.0789 8.1250 2.7875 16 1 -2.0603 8.8601 0.7132 17 6 1.3192 4.8084 -0.2623 18 6 1.9939 3.6275 -0.3555 19 6 2.1975 -1.2687 -0.0006 20 6 1.8471 -2.1041 -1.2502 21 6 1.8599 -3.5439 -0.7833 22 6 1.9299 -4.7219 -1.5081 23 6 1.9264 -5.9398 -0.8572 24 6 1.8524 -5.9843 0.5227 25 6 1.7825 -4.8108 1.2473 26 6 1.7868 -3.5884 0.5963 27 6 1.7205 -2.1815 1.1508 28 1 -0.3633 -0.0985 1.0229 29 1 -0.3633 0.9352 -0.4261 30 1 -0.3634 -0.8366 -0.5968 31 1 -0.3337 1.5494 1.0075 32 1 -1.5521 3.6591 1.1907 33 1 -2.3368 5.5141 3.1140 34 1 1.7744 5.7209 -0.6179 35 1 2.9842 3.6050 -0.7857 36 1 3.2721 -1.0970 0.0619 37 1 2.5949 -1.9523 -2.0285 38 1 0.8575 -1.8351 -1.6197 39 1 1.9865 -4.6880 -2.5861 40 1 1.9815 -6.8567 -1.4254 41 1 1.8500 -6.9360 1.0334 42 1 1.7243 -4.8464 2.3251 43 1 0.6963 -1.9324 1.4288 44 1 2.3802 -2.0833 2.0129 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270265557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:41 Heat of formation + Delta-G solvation = 15.982230 kcal Electronic energy + Delta-G solvation = -25680.497863 eV Core-core repulsion = 22141.124052 eV Total energy + Delta-G solvation = -3539.373810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.67747 -40.54701 -38.93104 -37.42232 -35.76844 -34.92711 -32.35294 -32.03940 -31.36107 -29.48168 -28.30574 -28.09013 -27.40986 -24.22814 -22.88471 -22.80862 -21.84333 -21.73523 -20.33038 -19.31157 -18.18915 -17.66886 -17.22477 -16.95974 -16.49977 -16.29341 -15.91752 -15.61811 -15.47923 -14.92866 -14.70093 -14.38411 -14.26729 -14.19058 -14.04559 -13.73911 -13.61163 -13.53573 -13.41043 -13.18173 -12.95155 -12.82571 -12.49648 -12.35178 -12.29187 -12.11042 -12.03793 -11.73043 -11.68397 -11.18807 -11.17521 -10.63856 -9.76251 -9.66363 -9.48705 -9.42676 -9.30973 -8.71345 -6.48432 0.42296 0.45963 0.48140 1.14182 1.40428 1.43508 1.53808 2.02415 2.08661 2.18755 2.76044 2.84605 3.42178 3.56156 3.66210 3.91288 4.01985 4.05985 4.16505 4.17930 4.19507 4.29145 4.43027 4.48337 4.56269 4.66228 4.67370 4.68513 4.79768 4.87305 4.90635 4.95688 5.04569 5.06348 5.16162 5.17106 5.21896 5.31476 5.51883 5.60055 5.62276 5.66328 5.72307 5.82402 5.97173 6.01804 6.11593 6.25194 6.46791 6.57593 6.80732 6.90674 7.32160 8.23022 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.002482 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.475655 B =11280.373548 C =11812.689596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.603 5.603 3 C 0.572 3.428 4 O -0.604 6.604 5 C -0.283 4.283 6 C -0.074 4.074 7 C -0.191 4.191 8 C 0.101 3.899 9 C -0.478 4.478 10 H 0.082 0.918 11 C 0.035 3.965 12 N -0.810 5.810 13 Si 0.989 3.011 14 H -0.257 1.257 15 H -0.267 1.267 16 H -0.260 1.260 17 C -0.248 4.248 18 C -0.038 4.038 19 C 0.141 3.859 20 C -0.087 4.087 21 C -0.106 4.106 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.106 4.106 27 C -0.087 4.087 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.149 0.851 32 H 0.117 0.883 33 H 0.294 0.706 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.133 0.867 43 H 0.095 0.905 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 -18.751 -2.511 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.334 5.334 3 C 0.367 3.633 4 O -0.488 6.488 5 C -0.288 4.288 6 C -0.092 4.092 7 C -0.211 4.211 8 C 0.098 3.902 9 C -0.506 4.506 10 H 0.100 0.900 11 C -0.182 4.182 12 N -0.434 5.434 13 Si 0.809 3.191 14 H -0.182 1.182 15 H -0.192 1.192 16 H -0.184 1.184 17 C -0.267 4.267 18 C -0.058 4.058 19 C 0.037 3.963 20 C -0.125 4.125 21 C -0.107 4.107 22 C -0.134 4.134 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.106 4.106 27 C -0.125 4.125 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.166 0.834 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.151 0.849 40 H 0.166 0.834 41 H 0.166 0.834 42 H 0.151 0.849 43 H 0.113 0.887 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.151 -18.807 -2.324 18.985 hybrid contribution -0.103 1.002 0.136 1.017 sum -1.254 -17.804 -2.188 17.982 Atomic orbital electron populations 1.22579 0.78363 1.04578 1.02547 1.47546 1.07654 1.04416 1.73749 1.18585 0.86226 0.84373 0.74140 1.90612 1.15814 1.88105 1.54266 1.19143 0.98580 0.92296 1.18762 1.21654 0.92702 0.98889 0.95963 1.21117 1.01133 0.91637 1.07198 1.18187 0.90388 0.94069 0.87599 1.20058 1.18777 1.00323 1.11425 0.89970 1.26882 0.97145 1.00971 0.93224 1.69741 1.30076 1.35652 1.07931 0.85086 0.78046 0.77141 0.78814 1.18183 1.19168 1.18377 1.20888 0.96289 0.96825 1.12744 1.20488 0.97394 0.92121 0.95752 1.21595 0.96967 0.82359 0.95355 1.21325 1.03206 0.90417 0.97572 1.20546 1.00871 0.94703 0.94552 1.20884 1.00598 0.91271 1.00618 1.21383 0.99722 0.97965 0.94983 1.21384 0.99691 0.98530 0.94450 1.20885 1.00592 0.91077 1.00801 1.20544 1.00842 0.94661 0.94587 1.21338 1.03090 0.90276 0.97772 0.90894 0.89285 0.89435 0.83382 0.86551 0.89467 0.87915 0.88225 0.89688 0.90703 0.88842 0.84909 0.83412 0.83418 0.84885 0.88728 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.58 7.42 127.77 0.95 2.53 16 2 N -0.60 -19.63 2.89 -820.86 -2.37 -22.00 16 3 C 0.57 24.29 7.51 86.72 0.65 24.94 16 4 O -0.60 -29.29 15.94 -3.99 -0.06 -29.36 16 5 C -0.28 -12.89 5.58 -19.93 -0.11 -13.00 16 6 C -0.07 -3.18 7.47 22.25 0.17 -3.01 16 7 C -0.19 -9.34 8.60 22.47 0.19 -9.14 16 8 C 0.10 5.22 5.55 -21.28 -0.12 5.10 16 9 C -0.48 -24.22 9.05 23.46 0.21 -24.01 16 10 H 0.08 4.01 7.87 -2.91 -0.02 3.99 16 11 C 0.04 1.64 5.26 85.35 0.45 2.09 16 12 N -0.81 -39.03 10.81 21.87 0.24 -38.80 16 13 Si 0.99 35.22 29.57 68.60 2.03 37.25 16 14 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 15 H -0.27 -9.08 7.11 99.48 0.71 -8.38 16 16 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 17 C -0.25 -12.34 9.73 22.47 0.22 -12.12 16 18 C -0.04 -1.85 9.52 22.25 0.21 -1.63 16 19 C 0.14 4.03 3.48 45.95 0.16 4.19 16 20 C -0.09 -2.09 6.35 30.52 0.19 -1.89 16 21 C -0.11 -2.34 6.14 -19.59 -0.12 -2.46 16 22 C -0.12 -2.13 10.04 22.30 0.22 -1.90 16 23 C -0.12 -1.88 10.05 22.24 0.22 -1.65 16 24 C -0.12 -1.88 10.05 22.24 0.22 -1.66 16 25 C -0.12 -2.12 10.04 22.30 0.22 -1.90 16 26 C -0.11 -2.33 6.14 -19.59 -0.12 -2.45 16 27 C -0.09 -2.05 6.39 30.56 0.20 -1.86 16 28 H 0.07 1.70 6.73 -2.39 -0.02 1.68 16 29 H 0.09 2.65 4.95 -2.39 -0.01 2.64 16 30 H 0.09 1.79 6.43 -2.39 -0.02 1.77 16 31 H 0.15 5.24 4.14 -2.91 -0.01 5.23 16 32 H 0.12 5.77 6.20 -2.91 -0.02 5.75 16 33 H 0.29 12.67 8.29 -92.71 -0.77 11.90 16 34 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 35 H 0.10 4.66 7.80 -2.91 -0.02 4.64 16 36 H 0.08 2.88 7.04 -2.39 -0.02 2.86 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.09 2.07 6.31 -2.39 -0.02 2.06 16 39 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 41 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.09 2.07 6.64 -2.38 -0.02 2.05 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -62.82 353.89 4.88 -57.94 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 1.03 Total: 34.81 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 4.02 Total: -39.84 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -2.14 Total: -60.80 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.06 Total: -29.36 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 2.03 Total: 37.25 kcal Total: -62.82 4.88 -57.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270265557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.918 kcal (2) G-P(sol) polarization free energy of solvation -62.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds