Wall clock time and date at job start Tue Mar 31 2020 13:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45204 * 109.47164 * 2 1 4 4 C 1.34224 * 117.00038 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00394 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99768 * 180.02562 * 4 3 2 7 7 C 1.50698 * 115.55473 * 325.58491 * 6 4 3 8 8 O 1.21293 * 120.00006 * 214.33199 * 7 6 4 9 9 N 1.34777 * 119.99538 * 34.32542 * 7 6 4 10 10 C 1.40158 * 119.99442 * 179.72434 * 9 7 6 11 11 C 1.40409 * 125.97784 * 0.28122 * 10 9 7 12 12 C 1.35239 * 107.86848 * 179.97438 * 11 10 9 13 13 C 1.50700 * 126.06756 * 179.97438 * 12 11 10 14 14 N 1.34967 * 107.85997 * 0.02562 * 12 11 10 15 15 C 1.46507 * 125.97367 * 180.02562 * 14 12 11 16 16 C 1.50692 * 109.47387 * 89.99873 * 15 14 12 17 17 H 1.08008 * 120.00093 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00340 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00375 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99664 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47109 * 90.00201 * 20 18 16 22 22 H 1.48501 * 109.46879 * 210.00032 * 20 18 16 23 23 H 1.48500 * 109.47158 * 330.00186 * 20 18 16 24 24 N 1.31229 * 125.96853 * 179.97438 * 10 9 7 25 25 C 1.53009 * 117.51699 * 111.28447 * 6 4 3 26 26 C 1.53002 * 117.49914 * 179.91244 * 6 4 3 27 27 H 1.09003 * 109.46835 * 299.99533 * 1 2 3 28 28 H 1.08995 * 109.47743 * 59.99624 * 1 2 3 29 29 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46835 * 240.00467 * 2 1 3 31 31 H 1.08995 * 109.47743 * 120.00376 * 2 1 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 33 33 H 1.07999 * 126.06362 * 359.97438 * 11 10 9 34 34 H 1.09002 * 109.46504 * 90.02731 * 13 12 11 35 35 H 1.09002 * 109.47033 * 210.02398 * 13 12 11 36 36 H 1.08994 * 109.47620 * 330.03009 * 13 12 11 37 37 H 1.08995 * 109.46869 * 210.00307 * 15 14 12 38 38 H 1.09007 * 109.47026 * 329.99771 * 15 14 12 39 39 H 0.96995 * 120.00594 * 180.02562 * 19 18 16 40 40 H 1.08994 * 117.49681 * 214.96752 * 25 6 4 41 41 H 1.08999 * 117.49364 * 359.97438 * 25 6 4 42 42 H 1.08996 * 117.49850 * 359.97438 * 26 6 4 43 43 H 1.08998 * 117.49976 * 145.00017 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9374 0.0000 7 6 3.1322 3.9673 -0.7674 8 8 3.7086 4.8591 -1.3536 9 7 1.7867 3.8972 -0.8024 10 6 1.0532 4.8583 -1.5113 11 6 1.5883 5.9388 -2.2309 12 6 0.5580 6.6295 -2.7697 13 6 0.6689 7.8672 -3.6221 14 7 -0.5873 6.0140 -2.4075 15 6 -1.9424 6.4317 -2.7758 16 6 -2.3401 5.7647 -4.0672 17 1 -1.6522 5.0967 -4.5642 18 6 -3.5819 6.0078 -4.6149 19 7 -3.9292 5.4253 -5.7416 20 14 -4.7715 7.1636 -3.7556 21 1 -4.5583 8.5485 -4.2472 22 1 -6.1661 6.7443 -4.0464 23 1 -4.5359 7.1168 -2.2902 24 7 -0.2535 4.9024 -1.6233 25 6 4.6466 3.4017 1.2644 26 6 5.4447 3.0716 0.0014 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.3258 3.1841 -0.3333 33 1 2.6367 6.1762 -2.3354 34 1 0.7440 7.5804 -4.6710 35 1 -0.2151 8.4883 -3.4776 36 1 1.5581 8.4281 -3.3344 37 1 -2.6383 6.1428 -1.9882 38 1 -1.9670 7.5140 -2.9033 39 1 -4.8026 5.5966 -6.1272 40 1 4.5539 4.4519 1.5410 41 1 4.7073 2.6999 2.0962 42 1 6.0308 2.1526 0.0024 43 1 5.8771 3.9047 -0.5527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271084095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:45 Heat of formation + Delta-G solvation = -10.417595 kcal Electronic energy + Delta-G solvation = -27137.051334 eV Core-core repulsion = 23185.683478 eV Total energy + Delta-G solvation = -3951.367856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.42895 -40.64001 -39.47128 -37.53113 -36.06993 -34.89798 -33.32631 -31.99855 -31.53581 -31.13692 -27.58988 -26.48980 -26.21206 -23.81230 -22.99952 -22.73938 -22.06996 -20.64831 -19.88275 -19.45759 -18.14023 -17.19649 -17.13380 -16.91626 -16.22923 -15.93165 -15.44431 -15.10974 -14.79725 -14.50636 -14.40213 -14.20406 -13.78809 -13.33188 -13.15250 -12.98734 -12.60636 -12.41545 -12.34031 -12.23958 -12.06086 -11.93989 -11.83469 -11.63306 -11.54094 -11.27463 -11.06912 -10.85797 -10.83322 -10.78926 -10.58589 -10.04578 -9.96538 -9.70144 -9.59112 -8.79833 -8.02014 -7.51895 -6.27562 -4.30789 1.57230 2.01172 2.22293 2.65762 2.77654 3.13299 3.21560 3.22284 3.26616 3.64776 3.66405 4.11812 4.13908 4.20171 4.41188 4.50640 4.70441 4.73744 5.00758 5.01460 5.12282 5.16394 5.33494 5.45776 5.50257 5.60616 5.62073 5.69267 5.81536 5.83457 6.02208 6.11704 6.16464 6.33326 6.41447 6.52512 6.59341 6.70134 7.27270 7.30904 7.36679 7.54572 7.83063 8.14204 8.29725 8.55323 8.77862 9.27492 10.84950 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.003401 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.883838 B = 8231.292248 C = 9547.782271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.067 3.933 3 O -0.358 6.358 4 C 0.506 3.494 5 O -0.495 6.495 6 C -0.180 4.180 7 C 0.561 3.439 8 O -0.506 6.506 9 N -0.618 5.618 10 C 0.267 3.733 11 C -0.288 4.288 12 C 0.095 3.905 13 C -0.085 4.085 14 N -0.316 5.316 15 C 0.232 3.768 16 C -0.541 4.541 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.886 5.886 20 Si 0.872 3.128 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.263 1.263 24 N -0.313 5.313 25 C -0.119 4.119 26 C -0.105 4.105 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.418 0.582 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.269 0.731 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.180 -4.820 14.367 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.006 4.006 3 O -0.275 6.275 4 C 0.348 3.652 5 O -0.382 6.382 6 C -0.185 4.185 7 C 0.345 3.655 8 O -0.380 6.380 9 N -0.269 5.269 10 C 0.014 3.986 11 C -0.319 4.319 12 C -0.036 4.036 13 C -0.143 4.143 14 N -0.098 5.098 15 C 0.113 3.887 16 C -0.579 4.579 17 H 0.099 0.901 18 C -0.125 4.125 19 N -0.523 5.523 20 Si 0.698 3.302 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.188 1.188 24 N -0.143 5.143 25 C -0.156 4.156 26 C -0.142 4.142 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.259 0.741 33 H 0.179 0.821 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.382 -5.081 14.104 20.095 hybrid contribution -0.529 0.127 0.194 0.578 sum 12.852 -4.954 14.298 19.854 Atomic orbital electron populations 1.21880 0.91879 1.03371 1.04454 1.23168 0.95885 0.78749 1.02801 1.86271 1.23720 1.33830 1.83706 1.21959 0.80912 0.89925 0.72397 1.90673 1.60410 1.41934 1.45195 1.21074 0.97953 0.90898 1.08577 1.18808 0.81367 0.84788 0.80584 1.90669 1.69565 1.34613 1.43179 1.42574 1.05430 1.28526 1.50342 1.18965 0.90337 0.91897 0.97393 1.21250 1.00329 0.99782 1.10512 1.21061 0.86367 0.97368 0.98783 1.20358 1.02643 0.92522 0.98810 1.48541 1.07013 1.17861 1.36360 1.20001 0.75252 0.95668 0.97829 1.21173 1.02224 1.29390 1.05115 0.90114 1.24803 0.97400 0.95636 0.94648 1.69869 1.21466 1.42500 1.18500 0.86911 0.81161 0.81490 0.80638 1.19604 1.20494 1.18785 1.77284 1.10880 1.07550 1.18611 1.23230 0.98262 1.03941 0.90206 1.23257 0.86704 1.05377 0.98875 0.91149 0.90634 0.89902 0.90802 0.90889 0.74095 0.82144 0.90041 0.91087 0.90617 0.93188 0.93628 0.92113 0.86199 0.86780 0.86155 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 10.29 37.16 0.38 -0.98 16 2 C 0.07 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.18 7.31 -39.24 -0.29 -4.47 16 4 C 0.51 6.11 7.49 36.01 0.27 6.38 16 5 O -0.50 -6.60 16.01 -18.75 -0.30 -6.90 16 6 C -0.18 -2.03 2.57 -156.81 -0.40 -2.44 16 7 C 0.56 8.38 7.35 -10.99 -0.08 8.30 16 8 O -0.51 -8.64 13.39 5.55 0.07 -8.56 16 9 N -0.62 -10.19 5.26 -11.13 -0.06 -10.24 16 10 C 0.27 5.44 8.11 -154.38 -1.25 4.19 16 11 C -0.29 -5.81 9.52 -39.83 -0.38 -6.18 16 12 C 0.10 1.95 6.92 -82.28 -0.57 1.38 16 13 C -0.09 -1.39 10.11 36.01 0.36 -1.03 16 14 N -0.32 -7.27 3.59 -58.33 -0.21 -7.48 16 15 C 0.23 5.52 5.06 -5.19 -0.03 5.49 16 16 C -0.54 -15.04 9.94 -34.44 -0.34 -15.39 16 17 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 20 Si 0.87 19.92 27.47 -169.99 -4.67 15.26 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 24 N -0.31 -7.12 12.59 31.44 0.40 -6.73 16 25 C -0.12 -0.92 9.94 -26.72 -0.27 -1.19 16 26 C -0.11 -0.92 9.56 -26.73 -0.26 -1.18 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 32 H 0.42 6.22 5.98 -40.82 -0.24 5.98 16 33 H 0.16 3.10 5.92 -52.49 -0.31 2.79 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.12 7.07 -51.93 -0.37 0.75 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.20 7.20 -51.93 -0.37 0.82 16 38 H 0.05 1.00 6.46 -51.93 -0.34 0.66 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.12 0.96 7.67 -51.93 -0.40 0.57 16 43 H 0.13 1.11 7.67 -51.93 -0.40 0.71 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -33.89 366.43 -7.00 -40.90 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.82 Total: 7.80 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.42 Total: 0.31 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.90 Total: -49.86 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.51 Total: -19.93 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.67 Total: 15.26 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.89 -7.00 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271084095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.478 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds