Wall clock time and date at job start Tue Mar 31 2020 13:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45204 * 109.47164 * 2 1 4 4 C 1.34224 * 117.00038 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00394 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99768 * 180.02562 * 4 3 2 7 7 C 1.50698 * 115.55473 * 325.58491 * 6 4 3 8 8 O 1.21293 * 120.00006 * 214.33199 * 7 6 4 9 9 N 1.34777 * 119.99538 * 34.32542 * 7 6 4 10 10 C 1.40158 * 119.99442 * 179.72434 * 9 7 6 11 11 C 1.40409 * 125.97784 * 0.28122 * 10 9 7 12 12 C 1.35239 * 107.86848 * 179.97438 * 11 10 9 13 13 C 1.50700 * 126.06756 * 179.97438 * 12 11 10 14 14 N 1.34967 * 107.85997 * 0.02562 * 12 11 10 15 15 C 1.46507 * 125.97367 * 180.02562 * 14 12 11 16 16 C 1.50692 * 109.47387 * 89.99873 * 15 14 12 17 17 H 1.08008 * 120.00093 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00340 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00375 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99664 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47109 * 90.00201 * 20 18 16 22 22 H 1.48501 * 109.46879 * 210.00032 * 20 18 16 23 23 H 1.48500 * 109.47158 * 330.00186 * 20 18 16 24 24 N 1.31229 * 125.96853 * 179.97438 * 10 9 7 25 25 C 1.53009 * 117.51699 * 111.28447 * 6 4 3 26 26 C 1.53002 * 117.49914 * 179.91244 * 6 4 3 27 27 H 1.09003 * 109.46835 * 299.99533 * 1 2 3 28 28 H 1.08995 * 109.47743 * 59.99624 * 1 2 3 29 29 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46835 * 240.00467 * 2 1 3 31 31 H 1.08995 * 109.47743 * 120.00376 * 2 1 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 33 33 H 1.07999 * 126.06362 * 359.97438 * 11 10 9 34 34 H 1.09002 * 109.46504 * 90.02731 * 13 12 11 35 35 H 1.09002 * 109.47033 * 210.02398 * 13 12 11 36 36 H 1.08994 * 109.47620 * 330.03009 * 13 12 11 37 37 H 1.08995 * 109.46869 * 210.00307 * 15 14 12 38 38 H 1.09007 * 109.47026 * 329.99771 * 15 14 12 39 39 H 0.96995 * 120.00594 * 180.02562 * 19 18 16 40 40 H 1.08994 * 117.49681 * 214.96752 * 25 6 4 41 41 H 1.08999 * 117.49364 * 359.97438 * 25 6 4 42 42 H 1.08996 * 117.49850 * 359.97438 * 26 6 4 43 43 H 1.08998 * 117.49976 * 145.00017 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9374 0.0000 7 6 3.1322 3.9673 -0.7674 8 8 3.7086 4.8591 -1.3536 9 7 1.7867 3.8972 -0.8024 10 6 1.0532 4.8583 -1.5113 11 6 1.5883 5.9388 -2.2309 12 6 0.5580 6.6295 -2.7697 13 6 0.6689 7.8672 -3.6221 14 7 -0.5873 6.0140 -2.4075 15 6 -1.9424 6.4317 -2.7758 16 6 -2.3401 5.7647 -4.0672 17 1 -1.6522 5.0967 -4.5642 18 6 -3.5819 6.0078 -4.6149 19 7 -3.9292 5.4253 -5.7416 20 14 -4.7715 7.1636 -3.7556 21 1 -4.5583 8.5485 -4.2472 22 1 -6.1661 6.7443 -4.0464 23 1 -4.5359 7.1168 -2.2902 24 7 -0.2535 4.9024 -1.6233 25 6 4.6466 3.4017 1.2644 26 6 5.4447 3.0716 0.0014 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.3258 3.1841 -0.3333 33 1 2.6367 6.1762 -2.3354 34 1 0.7440 7.5804 -4.6710 35 1 -0.2151 8.4883 -3.4776 36 1 1.5581 8.4281 -3.3344 37 1 -2.6383 6.1428 -1.9882 38 1 -1.9670 7.5140 -2.9033 39 1 -4.8026 5.5966 -6.1272 40 1 4.5539 4.4519 1.5410 41 1 4.7073 2.6999 2.0962 42 1 6.0308 2.1526 0.0024 43 1 5.8771 3.9047 -0.5527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271084095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:45 Heat of formation + Delta-G solvation = -31.670144 kcal Electronic energy + Delta-G solvation = -27137.972913 eV Core-core repulsion = 23185.683478 eV Total energy + Delta-G solvation = -3952.289436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.57836 -41.99856 -40.65878 -38.45741 -37.00528 -36.33562 -35.25268 -33.28966 -32.82231 -32.67837 -29.28097 -27.92638 -27.39235 -25.02563 -24.18544 -23.63573 -23.26955 -21.89743 -21.31461 -20.70017 -19.34650 -19.23721 -18.21156 -17.85035 -17.58138 -17.11403 -16.94569 -16.55235 -16.08574 -15.90239 -15.45546 -15.27538 -15.06036 -14.89514 -14.48822 -14.10887 -13.92591 -13.77926 -13.68838 -13.64551 -13.25527 -13.08535 -12.90571 -12.62025 -12.58410 -12.52851 -12.47463 -12.27862 -11.88663 -11.84266 -11.70724 -11.63478 -11.58555 -11.46542 -11.00935 -10.88971 -9.63335 -9.15609 -8.40297 -6.51725 0.60094 0.83678 1.12593 1.28591 1.35494 1.38173 1.43241 1.49259 2.07323 2.20134 2.27123 2.52778 2.92118 3.19152 3.29556 3.50487 3.69266 3.82668 3.96348 3.96715 4.10533 4.28365 4.38506 4.47926 4.51642 4.57069 4.70513 4.75584 4.80176 4.83307 4.83959 4.86645 4.95803 5.05420 5.06318 5.09480 5.19486 5.23669 5.31360 5.82189 5.98033 6.14534 6.35672 6.40700 6.51844 6.84099 6.99521 7.12278 8.76458 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.003401 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.883838 B = 8231.292248 C = 9547.782271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.062 3.938 3 O -0.369 6.369 4 C 0.508 3.492 5 O -0.510 6.510 6 C -0.200 4.200 7 C 0.562 3.438 8 O -0.528 6.528 9 N -0.617 5.617 10 C 0.271 3.729 11 C -0.298 4.298 12 C 0.092 3.908 13 C -0.084 4.084 14 N -0.340 5.340 15 C 0.241 3.759 16 C -0.551 4.551 17 H 0.022 0.978 18 C 0.022 3.978 19 N -0.938 5.938 20 Si 0.951 3.049 21 H -0.249 1.249 22 H -0.279 1.279 23 H -0.244 1.244 24 N -0.352 5.352 25 C -0.092 4.092 26 C -0.097 4.097 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.424 0.576 33 H 0.170 0.830 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.274 0.726 40 H 0.130 0.870 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.855 -3.564 16.603 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.011 4.011 3 O -0.286 6.286 4 C 0.352 3.648 5 O -0.398 6.398 6 C -0.205 4.205 7 C 0.348 3.652 8 O -0.404 6.404 9 N -0.270 5.270 10 C 0.017 3.983 11 C -0.328 4.328 12 C -0.039 4.039 13 C -0.142 4.142 14 N -0.122 5.122 15 C 0.121 3.879 16 C -0.589 4.589 17 H 0.041 0.959 18 C -0.178 4.178 19 N -0.576 5.576 20 Si 0.772 3.228 21 H -0.173 1.173 22 H -0.204 1.204 23 H -0.167 1.167 24 N -0.182 5.182 25 C -0.129 4.129 26 C -0.134 4.134 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.266 0.734 33 H 0.187 0.813 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.149 0.851 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 14.092 -3.837 16.358 21.929 hybrid contribution -0.601 -0.389 -0.542 0.898 sum 13.491 -4.226 15.816 21.213 Atomic orbital electron populations 1.21888 0.91380 1.04556 1.03357 1.23362 0.96262 0.77961 1.03481 1.86264 1.23737 1.35090 1.83532 1.22055 0.80858 0.90030 0.71889 1.90662 1.60661 1.42338 1.46178 1.21062 0.98687 0.89458 1.11289 1.19429 0.80675 0.85074 0.80022 1.90639 1.69769 1.35884 1.44063 1.42781 1.05998 1.28012 1.50167 1.19327 0.90011 0.92314 0.96680 1.21461 1.00684 0.99914 1.10765 1.21782 0.85587 0.98204 0.98279 1.20524 1.04767 0.91187 0.97751 1.48476 1.07252 1.18745 1.37770 1.19797 0.76087 0.96637 0.95365 1.21245 1.01795 1.29072 1.06812 0.95940 1.25834 0.99316 0.97443 0.95170 1.70033 1.22425 1.44564 1.20600 0.85679 0.77612 0.79348 0.80205 1.17341 1.20407 1.16718 1.77197 1.12292 1.08489 1.20204 1.23493 0.94683 1.05095 0.89604 1.23401 0.84739 1.05878 0.99383 0.90757 0.93098 0.87616 0.91200 0.89106 0.73379 0.81267 0.90438 0.90217 0.87150 0.93200 0.90759 0.91727 0.85139 0.84390 0.85120 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.29 71.98 0.74 -1.89 16 2 C 0.06 1.15 6.19 71.98 0.45 1.59 16 3 O -0.37 -8.50 7.31 -51.36 -0.38 -8.87 16 4 C 0.51 11.77 7.49 71.24 0.53 12.31 16 5 O -0.51 -12.96 16.01 21.96 0.35 -12.61 16 6 C -0.20 -4.23 2.57 -53.67 -0.14 -4.37 16 7 C 0.56 16.47 7.35 87.66 0.64 17.12 16 8 O -0.53 -17.70 13.39 -3.07 -0.04 -17.74 16 9 N -0.62 -20.47 5.26 -307.50 -1.62 -22.09 16 10 C 0.27 11.19 8.11 133.32 1.08 12.27 16 11 C -0.30 -12.00 9.52 22.11 0.21 -11.79 16 12 C 0.09 3.73 6.92 41.38 0.29 4.02 16 13 C -0.08 -2.64 10.11 71.24 0.72 -1.92 16 14 N -0.34 -15.84 3.59 -338.44 -1.22 -17.05 16 15 C 0.24 11.43 5.06 85.63 0.43 11.87 16 16 C -0.55 -31.63 9.94 25.60 0.25 -31.38 16 17 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 18 C 0.02 1.24 5.47 84.65 0.46 1.70 16 19 N -0.94 -57.00 13.96 21.45 0.30 -56.70 16 20 Si 0.95 40.44 27.47 68.60 1.88 42.32 16 21 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 24 N -0.35 -16.40 12.59 -54.44 -0.69 -17.08 16 25 C -0.09 -1.16 9.94 30.60 0.30 -0.86 16 26 C -0.10 -1.50 9.56 30.60 0.29 -1.20 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 31 H 0.09 1.36 8.13 -2.39 -0.02 1.34 16 32 H 0.42 12.78 5.98 -92.71 -0.55 12.23 16 33 H 0.17 6.46 5.92 -2.91 -0.02 6.45 16 34 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.08 2.34 7.07 -2.39 -0.02 2.33 16 36 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.05 2.35 7.20 -2.39 -0.02 2.33 16 38 H 0.07 3.08 6.46 -2.38 -0.02 3.07 16 39 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.13 1.78 7.67 -2.39 -0.02 1.76 16 43 H 0.13 1.99 7.67 -2.39 -0.02 1.97 16 Total: -1.00 -76.71 366.43 5.31 -71.40 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.44 Total: 30.95 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 6.27 Total: 7.46 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -3.22 Total: -112.93 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.06 Total: -39.22 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.88 Total: 42.32 kcal Total: -76.71 5.31 -71.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271084095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.733 kcal (2) G-P(sol) polarization free energy of solvation -76.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds