Wall clock time and date at job start Tue Mar 31 2020 12:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46852 * 2 1 4 4 C 1.34780 * 119.99676 * 179.97438 * 3 2 1 5 5 O 1.21580 * 120.00021 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99722 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99924 * 180.02562 * 6 4 3 8 8 N 1.40098 * 120.00009 * 0.02562 * 6 4 3 9 9 C 1.34775 * 120.00203 * 104.99672 * 8 6 4 10 10 O 1.21287 * 119.99798 * 0.02562 * 9 8 6 11 11 C 1.50705 * 120.00246 * 179.97438 * 9 8 6 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.08995 * 109.47238 * 59.99900 * 1 2 3 28 28 H 1.09009 * 109.46725 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47095 * 299.99024 * 1 2 3 30 30 H 1.09002 * 109.47458 * 240.00605 * 2 1 3 31 31 H 1.09003 * 109.47510 * 120.00303 * 2 1 3 32 32 H 0.96992 * 119.99791 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.46951 * 270.00118 * 7 6 4 34 34 H 1.09002 * 109.46921 * 30.00325 * 7 6 4 35 35 H 1.08998 * 109.46652 * 150.00161 * 7 6 4 36 36 H 0.97005 * 120.00193 * 285.00120 * 8 6 4 37 37 H 1.08998 * 109.46621 * 60.00483 * 11 9 8 38 38 H 1.08996 * 109.47266 * 300.00146 * 11 9 8 39 39 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 40 40 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 41 41 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 43 43 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1334 0.7034 0.0005 6 7 3.7926 2.8983 0.0010 7 6 5.2329 3.1660 0.0010 8 7 2.8821 3.9631 0.0016 9 6 2.6738 4.6711 1.1293 10 8 3.2749 4.3866 2.1436 11 6 1.6949 5.8169 1.1298 12 6 1.6484 6.4373 2.5023 13 6 2.5072 7.4735 2.8207 14 6 2.4668 8.0445 4.0775 15 6 1.5627 7.5767 5.0223 16 8 1.5201 8.1363 6.2583 17 6 2.3000 9.2159 6.4687 18 1 2.9812 9.5482 5.6994 19 6 2.2274 9.8995 7.6729 20 7 1.3973 9.4950 8.6100 21 14 3.3073 11.3956 7.9641 22 1 2.5934 12.6169 7.5126 23 1 3.6156 11.5092 9.4123 24 1 4.5717 11.2500 7.1988 25 6 0.7059 6.5319 4.7016 26 6 0.7474 5.9689 3.4412 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3879 2.1184 0.0004 33 1 5.5902 3.2319 1.0287 34 1 5.7527 2.3576 -0.5133 35 1 5.4273 4.1076 -0.5124 36 1 2.4016 4.1908 -0.8097 37 1 0.7043 5.4484 0.8635 38 1 2.0115 6.5655 0.4036 39 1 3.2098 7.8371 2.0854 40 1 3.1374 8.8539 4.3253 41 1 1.3468 9.9730 9.4525 42 1 0.0048 6.1630 5.4356 43 1 0.0783 5.1593 3.1898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272637680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:02 Heat of formation + Delta-G solvation = -27.182994 kcal Electronic energy + Delta-G solvation = -26285.239927 eV Core-core repulsion = 22333.145068 eV Total energy + Delta-G solvation = -3952.094858 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.75118 -39.52508 -38.75701 -36.70208 -35.98335 -35.55814 -32.68091 -32.18053 -30.90891 -30.87685 -30.17923 -27.12703 -26.34006 -25.12887 -23.12954 -22.02862 -21.95058 -20.63798 -20.30152 -19.25167 -18.00368 -17.33346 -17.03107 -16.96052 -15.89109 -15.63158 -15.18424 -14.82508 -14.62090 -14.59452 -14.43390 -14.22491 -13.97303 -13.52767 -13.48687 -13.19154 -12.90790 -12.73903 -12.61021 -12.47989 -12.18296 -11.94566 -11.84437 -11.57866 -11.29631 -10.91991 -10.83572 -10.80099 -10.64992 -10.43985 -10.22638 -9.75883 -9.47959 -9.34952 -8.93479 -8.82534 -8.18110 -7.20125 -6.46024 -4.04581 1.53692 2.22597 2.28620 2.50924 2.86040 2.90671 3.12687 3.13139 3.18182 3.96076 4.21340 4.52025 4.64564 4.75657 4.80790 4.99561 5.06692 5.09384 5.13332 5.21505 5.27812 5.33704 5.44262 5.54006 5.57786 5.65855 5.68017 5.68324 5.80281 6.15261 6.18829 6.19823 6.38570 6.60010 6.66510 6.87506 7.00359 7.07483 7.20870 7.32836 7.43039 7.53047 7.80727 7.99085 8.11742 8.35746 8.99540 9.69483 10.71953 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021891 B = 0.002389 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.736679 B =11716.960301 C =12276.195892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.131 3.869 3 N -0.741 5.741 4 C 0.715 3.285 5 O -0.580 6.580 6 N -0.427 5.427 7 C 0.108 3.892 8 N -0.540 5.540 9 C 0.505 3.495 10 O -0.494 6.494 11 C -0.068 4.068 12 C -0.177 4.177 13 C -0.054 4.054 14 C -0.233 4.233 15 C 0.159 3.841 16 O -0.176 6.176 17 C -0.392 4.392 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.192 4.192 26 C -0.057 4.057 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.397 0.603 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.411 0.589 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.270 0.730 42 H 0.117 0.883 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.596 -11.007 -21.810 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.398 5.398 4 C 0.416 3.584 5 O -0.455 6.455 6 N -0.255 5.255 7 C -0.034 4.034 8 N -0.294 5.294 9 C 0.292 3.708 10 O -0.363 6.363 11 C -0.110 4.110 12 C -0.179 4.179 13 C -0.072 4.072 14 C -0.252 4.252 15 C 0.105 3.895 16 O -0.079 6.079 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.211 4.211 26 C -0.075 4.075 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.232 0.768 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.252 0.748 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.145 0.855 41 H 0.080 0.920 42 H 0.135 0.865 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.725 -11.949 -20.571 23.801 hybrid contribution 0.096 1.300 -0.238 1.325 sum -0.629 -10.649 -20.810 23.385 Atomic orbital electron populations 1.22017 0.94244 1.03376 1.02685 1.21203 0.94075 0.81555 1.02445 1.45146 1.05326 1.09394 1.79897 1.15837 0.83104 0.81759 0.77677 1.90957 1.55126 1.40918 1.58451 1.46324 1.02559 0.97195 1.79454 1.21799 0.76398 1.02216 1.03032 1.45491 1.41580 1.28282 1.14076 1.21845 0.83555 0.83222 0.82219 1.90802 1.47122 1.66641 1.31721 1.20359 0.98013 0.94453 0.98168 1.18549 1.03068 1.01794 0.94463 1.20503 0.96193 0.94823 0.95672 1.21107 1.04086 1.05573 0.94474 1.19402 0.92485 0.92085 0.85569 1.83976 1.59180 1.40721 1.24063 1.21338 1.19082 1.04176 1.02186 0.89026 1.25301 0.97566 0.98925 0.94739 1.70037 1.34625 1.39317 1.05688 0.85705 0.79436 0.80092 0.78164 1.19855 1.20239 1.19183 1.20155 1.03211 1.00433 0.97346 1.20385 0.97247 0.97447 0.92464 0.91977 0.90541 0.91752 0.91515 0.91487 0.76814 0.91898 0.89460 0.90900 0.74790 0.88444 0.88380 0.87756 0.85537 0.91987 0.86511 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.03 37.16 0.37 -0.49 16 2 C 0.13 1.07 6.39 -4.04 -0.03 1.04 16 3 N -0.74 -7.04 5.52 -65.22 -0.36 -7.40 16 4 C 0.72 9.14 8.40 -86.91 -0.73 8.41 16 5 O -0.58 -9.33 15.92 5.30 0.08 -9.25 16 6 N -0.43 -4.83 3.15 -72.07 -0.23 -5.06 16 7 C 0.11 1.14 10.50 59.85 0.63 1.77 16 8 N -0.54 -4.70 4.83 31.22 0.15 -4.55 16 9 C 0.51 6.11 7.85 -10.98 -0.09 6.03 16 10 O -0.49 -8.87 16.23 5.55 0.09 -8.78 16 11 C -0.07 -0.70 5.83 -29.04 -0.17 -0.87 16 12 C -0.18 -2.84 4.38 -104.58 -0.46 -3.30 16 13 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 14 C -0.23 -5.08 9.17 -39.39 -0.36 -5.44 16 15 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 16 O -0.18 -5.07 9.76 0.05 0.00 -5.07 16 17 C -0.39 -10.99 9.49 30.89 0.29 -10.70 16 18 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.36 13.67 55.48 0.76 -24.61 16 21 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 25 C -0.19 -4.08 9.99 -39.39 -0.39 -4.47 16 26 C -0.06 -0.99 9.69 -39.61 -0.38 -1.38 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.40 2.94 7.51 -40.82 -0.31 2.64 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.88 7.42 -51.93 -0.39 0.49 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.41 1.90 8.83 -182.59 -1.61 0.28 16 37 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 43 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -37.51 373.77 -8.02 -45.54 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -7.08 Total: 4.17 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.05 Total: -6.16 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.32 Total: -41.61 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.17 Total: -23.10 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.51 -8.02 -45.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272637680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.355 kcal (2) G-P(sol) polarization free energy of solvation -37.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds