Wall clock time and date at job start Tue Mar 31 2020 12:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46852 * 2 1 4 4 C 1.34780 * 119.99676 * 179.97438 * 3 2 1 5 5 O 1.21580 * 120.00021 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99722 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99924 * 180.02562 * 6 4 3 8 8 N 1.40098 * 120.00009 * 0.02562 * 6 4 3 9 9 C 1.34775 * 120.00203 * 104.99672 * 8 6 4 10 10 O 1.21287 * 119.99798 * 0.02562 * 9 8 6 11 11 C 1.50705 * 120.00246 * 179.97438 * 9 8 6 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.08995 * 109.47238 * 59.99900 * 1 2 3 28 28 H 1.09009 * 109.46725 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47095 * 299.99024 * 1 2 3 30 30 H 1.09002 * 109.47458 * 240.00605 * 2 1 3 31 31 H 1.09003 * 109.47510 * 120.00303 * 2 1 3 32 32 H 0.96992 * 119.99791 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.46951 * 270.00118 * 7 6 4 34 34 H 1.09002 * 109.46921 * 30.00325 * 7 6 4 35 35 H 1.08998 * 109.46652 * 150.00161 * 7 6 4 36 36 H 0.97005 * 120.00193 * 285.00120 * 8 6 4 37 37 H 1.08998 * 109.46621 * 60.00483 * 11 9 8 38 38 H 1.08996 * 109.47266 * 300.00146 * 11 9 8 39 39 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 40 40 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 41 41 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 43 43 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1334 0.7034 0.0005 6 7 3.7926 2.8983 0.0010 7 6 5.2329 3.1660 0.0010 8 7 2.8821 3.9631 0.0016 9 6 2.6738 4.6711 1.1293 10 8 3.2749 4.3866 2.1436 11 6 1.6949 5.8169 1.1298 12 6 1.6484 6.4373 2.5023 13 6 2.5072 7.4735 2.8207 14 6 2.4668 8.0445 4.0775 15 6 1.5627 7.5767 5.0223 16 8 1.5201 8.1363 6.2583 17 6 2.3000 9.2159 6.4687 18 1 2.9812 9.5482 5.6994 19 6 2.2274 9.8995 7.6729 20 7 1.3973 9.4950 8.6100 21 14 3.3073 11.3956 7.9641 22 1 2.5934 12.6169 7.5126 23 1 3.6156 11.5092 9.4123 24 1 4.5717 11.2500 7.1988 25 6 0.7059 6.5319 4.7016 26 6 0.7474 5.9689 3.4412 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3879 2.1184 0.0004 33 1 5.5902 3.2319 1.0287 34 1 5.7527 2.3576 -0.5133 35 1 5.4273 4.1076 -0.5124 36 1 2.4016 4.1908 -0.8097 37 1 0.7043 5.4484 0.8635 38 1 2.0115 6.5655 0.4036 39 1 3.2098 7.8371 2.0854 40 1 3.1374 8.8539 4.3253 41 1 1.3468 9.9730 9.4525 42 1 0.0048 6.1630 5.4356 43 1 0.0783 5.1593 3.1898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272637680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:01 Heat of formation + Delta-G solvation = -55.519976 kcal Electronic energy + Delta-G solvation = -26286.468710 eV Core-core repulsion = 22333.145068 eV Total energy + Delta-G solvation = -3953.323642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.70316 -40.86481 -40.15379 -38.25798 -36.98128 -36.43752 -34.40852 -33.48562 -32.13289 -31.74193 -31.53421 -28.34914 -27.51764 -26.83571 -23.81810 -23.62164 -23.07840 -21.82983 -21.36439 -20.14305 -19.82403 -18.83716 -18.24772 -17.88702 -16.73382 -16.67067 -16.53591 -16.26438 -15.94510 -15.70930 -15.53973 -15.45919 -15.31358 -15.08802 -14.82963 -14.39443 -14.11542 -14.05402 -13.59892 -13.49521 -13.17100 -12.97174 -12.79572 -12.69935 -12.46616 -12.40144 -12.29467 -12.25938 -12.11959 -11.87008 -11.29909 -11.16794 -10.80857 -10.70537 -10.37304 -9.77031 -9.73720 -8.89095 -8.47506 -6.15574 0.53799 0.64378 0.90430 1.34005 1.43789 1.51772 1.57611 1.92118 2.10668 2.17604 2.82369 3.14890 3.48785 3.53729 3.82986 4.08382 4.08702 4.17769 4.22482 4.23074 4.40188 4.49410 4.51481 4.52559 4.62037 4.75307 4.80400 4.83329 4.91306 5.06123 5.11336 5.15520 5.25644 5.30399 5.32827 5.42922 5.58524 5.73822 5.78557 5.80104 6.03532 6.23397 6.36059 6.68647 6.97249 7.25012 7.48009 7.79239 8.76064 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021891 B = 0.002389 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.736679 B =11716.960301 C =12276.195892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 N -0.729 5.729 4 C 0.705 3.295 5 O -0.621 6.621 6 N -0.433 5.433 7 C 0.108 3.892 8 N -0.513 5.513 9 C 0.513 3.487 10 O -0.560 6.560 11 C -0.064 4.064 12 C -0.149 4.149 13 C -0.057 4.057 14 C -0.247 4.247 15 C 0.112 3.888 16 O -0.235 6.235 17 C -0.413 4.413 18 H 0.101 0.899 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.019 2.981 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.255 1.255 25 C -0.210 4.210 26 C -0.054 4.054 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.410 0.590 33 H 0.036 0.964 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.438 0.562 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.273 0.727 42 H 0.109 0.891 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 -10.981 -26.306 28.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.003 3.997 3 N -0.385 5.385 4 C 0.406 3.594 5 O -0.499 6.499 6 N -0.260 5.260 7 C -0.034 4.034 8 N -0.269 5.269 9 C 0.301 3.699 10 O -0.435 6.435 11 C -0.105 4.105 12 C -0.150 4.150 13 C -0.075 4.075 14 C -0.267 4.267 15 C 0.062 3.938 16 O -0.142 6.142 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.839 3.161 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.178 1.178 25 C -0.230 4.230 26 C -0.072 4.072 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.247 0.753 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.284 0.716 37 H 0.165 0.835 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.329 -11.933 -25.193 27.908 hybrid contribution 0.208 1.018 0.792 1.307 sum -1.121 -10.914 -24.401 26.754 Atomic orbital electron populations 1.21966 0.91542 1.04428 1.03357 1.21323 0.96173 0.80744 1.01456 1.45128 1.04354 1.10421 1.78643 1.16126 0.83818 0.81786 0.77659 1.90924 1.56393 1.42311 1.60264 1.46350 1.03199 0.97468 1.78938 1.21818 0.76173 1.03692 1.01757 1.45199 1.40611 1.26635 1.14420 1.22074 0.82794 0.83269 0.81793 1.90827 1.49744 1.68634 1.34251 1.20528 1.00357 0.94590 0.95007 1.19228 0.99607 0.99299 0.96857 1.20980 0.96956 0.94922 0.94621 1.21242 1.03611 1.05865 0.95952 1.19994 0.94729 0.93673 0.85429 1.83935 1.61243 1.42259 1.26776 1.21820 1.19517 1.04662 1.02935 0.88196 1.26616 0.99164 1.02314 0.94095 1.70187 1.37595 1.41711 1.06566 0.84579 0.77632 0.75680 0.78257 1.18458 1.19650 1.17820 1.20462 1.02973 1.00228 0.99317 1.20920 0.97884 0.97601 0.90798 0.90318 0.89405 0.91896 0.91604 0.93532 0.75345 0.94519 0.89424 0.88119 0.71624 0.83481 0.83942 0.84019 0.86715 0.91851 0.87291 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 10.03 71.98 0.72 -0.42 16 2 C 0.13 1.84 6.39 86.38 0.55 2.39 16 3 N -0.73 -11.92 5.52 -478.53 -2.64 -14.57 16 4 C 0.71 16.81 8.40 179.05 1.50 18.31 16 5 O -0.62 -19.83 15.92 -3.97 -0.06 -19.89 16 6 N -0.43 -8.62 3.15 -500.19 -1.58 -10.19 16 7 C 0.11 2.10 10.50 127.77 1.34 3.44 16 8 N -0.51 -6.39 4.83 -173.52 -0.84 -7.23 16 9 C 0.51 9.86 7.85 87.66 0.69 10.55 16 10 O -0.56 -18.62 16.23 -3.05 -0.05 -18.67 16 11 C -0.06 -0.86 5.83 29.10 0.17 -0.69 16 12 C -0.15 -4.11 4.38 -19.84 -0.09 -4.19 16 13 C -0.06 -1.88 9.69 22.25 0.22 -1.66 16 14 C -0.25 -10.94 9.17 22.39 0.21 -10.74 16 15 C 0.11 5.72 6.65 22.58 0.15 5.87 16 16 O -0.24 -14.59 9.76 -22.72 -0.22 -14.81 16 17 C -0.41 -24.67 9.49 67.92 0.64 -24.02 16 18 H 0.10 5.48 5.20 -2.91 -0.02 5.47 16 19 C -0.02 -1.44 5.49 84.84 0.47 -0.97 16 20 N -0.92 -57.73 13.67 21.62 0.30 -57.44 16 21 Si 1.02 43.62 29.55 68.60 2.03 45.65 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 25 C -0.21 -9.12 9.99 22.39 0.22 -8.89 16 26 C -0.05 -1.73 9.69 22.25 0.22 -1.51 16 27 H 0.08 0.34 8.14 -2.39 -0.02 0.33 16 28 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.41 4.35 7.51 -92.71 -0.70 3.65 16 33 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.69 7.42 -2.39 -0.02 1.67 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.44 1.19 8.83 -213.31 -1.88 -0.69 16 37 H 0.15 0.73 8.08 -2.39 -0.02 0.71 16 38 H 0.14 0.88 8.08 -2.39 -0.02 0.86 16 39 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 40 H 0.12 5.21 5.64 -2.91 -0.02 5.19 16 41 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 42 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 43 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -93.05 373.77 2.42 -90.63 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -1.52 Total: 19.05 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 7.01 Total: -12.52 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -4.76 Total: -89.43 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -0.33 Total: -53.38 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -93.05 2.42 -90.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272637680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.114 kcal (2) G-P(sol) polarization free energy of solvation -93.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds