Wall clock time and date at job start Tue Mar 31 2020 13:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35965 * 117.00350 * 2 1 4 4 C 1.38490 * 120.04514 * 359.72762 * 3 2 1 5 5 C 1.38813 * 119.94893 * 179.72591 * 4 3 2 6 6 N 1.40091 * 119.97959 * 180.27462 * 5 4 3 7 7 C 1.34785 * 119.99749 * 215.33584 * 6 5 4 8 8 O 1.21587 * 119.99842 * 355.24550 * 7 6 5 9 9 N 1.34780 * 119.99566 * 175.23739 * 7 6 5 10 10 C 1.46500 * 119.99551 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46928 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46851 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00361 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99963 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99810 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00316 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46679 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46949 * 119.99812 * 16 14 12 19 19 H 1.48497 * 109.47201 * 240.00310 * 16 14 12 20 20 C 1.38872 * 120.03551 * 0.54318 * 5 4 3 21 21 C 1.38131 * 120.09550 * 359.72921 * 20 5 4 22 22 C 1.38709 * 120.05446 * 359.97438 * 21 20 5 23 23 N 1.40288 * 120.02374 * 179.97438 * 22 21 20 24 24 C 1.34782 * 119.99526 * 24.80417 * 23 22 21 25 25 C 1.50698 * 119.99918 * 185.55375 * 24 23 22 26 26 O 1.21294 * 120.00316 * 5.56196 * 24 23 22 27 27 H 1.09003 * 109.47305 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46715 * 60.00199 * 1 2 3 29 29 H 1.08995 * 109.47274 * 300.00111 * 1 2 3 30 30 H 1.07995 * 120.02286 * 359.97438 * 4 3 2 31 31 H 0.96996 * 120.00695 * 35.33588 * 6 5 4 32 32 H 0.96991 * 120.00480 * 0.02562 * 9 7 6 33 33 H 1.08996 * 109.47720 * 300.01085 * 10 9 7 34 34 H 1.09008 * 109.46714 * 60.00695 * 10 9 7 35 35 H 1.08999 * 109.47286 * 300.00154 * 11 10 9 36 36 H 1.08994 * 109.47158 * 60.00780 * 11 10 9 37 37 H 0.96996 * 119.99694 * 179.97438 * 15 14 12 38 38 H 1.07999 * 119.94862 * 179.70569 * 20 5 4 39 39 H 1.08007 * 119.97114 * 179.97438 * 21 20 5 40 40 H 0.96996 * 120.00530 * 204.81007 * 23 22 21 41 41 H 1.09001 * 109.46609 * 90.00064 * 25 24 23 42 42 H 1.08996 * 109.47404 * 210.00804 * 25 24 23 43 43 H 1.09000 * 109.47143 * 330.00866 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2930 2.3735 -0.0057 5 6 1.9253 3.6093 0.0001 6 7 1.1639 4.7852 0.0001 7 6 1.5997 5.8702 -0.6704 8 8 2.6927 5.8573 -1.2028 9 7 0.8237 6.9692 -0.7508 10 6 1.2976 8.1487 -1.4792 11 6 0.2345 9.2473 -1.4176 12 6 0.7217 10.4603 -2.1673 13 1 1.6923 10.4488 -2.6409 14 6 -0.0717 11.5851 -2.2489 15 7 -1.2539 11.5990 -1.6727 16 14 0.5319 13.0885 -3.1788 17 1 1.8836 12.8189 -3.7316 18 1 -0.4059 13.3931 -4.2893 19 1 0.5981 14.2488 -2.2544 20 6 3.3122 3.6804 0.0001 21 6 4.0652 2.5224 0.0001 22 6 3.4374 1.2855 0.0006 23 7 4.2027 0.1098 0.0000 24 6 5.4587 0.1232 0.4888 25 6 6.3247 -1.1048 0.3749 26 8 5.8920 1.1236 1.0206 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8899 30 1 0.2145 2.3183 -0.0106 31 1 0.3232 4.8187 0.4827 32 1 -0.0481 6.9796 -0.3259 33 1 2.2200 8.5102 -1.0247 34 1 1.4853 7.8822 -2.5194 35 1 -0.6881 8.8860 -1.8719 36 1 0.0472 9.5137 -0.3774 37 1 -1.8118 12.3904 -1.7297 38 1 3.8027 4.6426 -0.0002 39 1 5.1437 2.5801 -0.0002 40 1 3.8281 -0.7127 -0.3522 41 1 6.8833 -1.0699 -0.5605 42 1 7.0209 -1.1375 1.2129 43 1 5.6963 -1.9952 0.3896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273101782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:49 Heat of formation + Delta-G solvation = -73.983682 kcal Electronic energy + Delta-G solvation = -25898.410354 eV Core-core repulsion = 21944.286066 eV Total energy + Delta-G solvation = -3954.124288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10072 -40.06263 -39.38913 -37.43581 -35.54509 -34.77305 -33.80692 -32.81851 -30.82746 -30.25500 -29.60895 -28.44584 -27.01430 -24.79706 -23.05175 -22.76269 -21.06368 -20.69453 -20.60985 -18.77594 -18.27537 -17.69903 -17.11780 -16.38462 -16.31432 -16.07764 -15.64982 -15.44679 -15.26343 -14.65629 -14.52288 -14.50826 -13.88048 -13.82242 -13.65920 -13.30340 -13.19388 -12.93374 -12.77354 -12.46376 -12.30760 -11.96502 -11.75653 -11.40934 -11.21333 -11.08657 -10.96850 -10.63243 -10.37225 -10.14597 -9.91408 -9.60506 -9.45011 -9.27045 -8.65757 -8.56813 -8.38680 -7.56358 -6.11248 -4.13835 1.11367 1.33980 2.35736 2.77643 2.79194 3.04131 3.27841 3.35590 3.35926 3.41097 3.80534 4.35565 4.42141 4.51995 4.66154 4.76040 4.80000 4.85213 5.00058 5.08022 5.15196 5.22321 5.26165 5.32424 5.51841 5.57444 5.68177 5.99844 6.15263 6.33840 6.35755 6.46545 6.53941 6.72349 6.78986 6.88163 7.11071 7.12782 7.22079 7.52526 7.59371 7.87586 7.87786 8.17495 8.30022 8.79747 8.92697 9.51154 11.00418 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023109 B = 0.002107 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.340583 B =13285.722583 C =14281.831241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.115 3.885 4 C -0.221 4.221 5 C 0.197 3.803 6 N -0.691 5.691 7 C 0.697 3.303 8 O -0.576 6.576 9 N -0.732 5.732 10 C 0.138 3.862 11 C 0.012 3.988 12 C -0.520 4.520 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.132 4.132 21 C -0.075 4.075 22 C 0.094 3.906 23 N -0.660 5.660 24 C 0.506 3.494 25 C -0.170 4.170 26 O -0.528 6.528 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.134 0.866 31 H 0.405 0.595 32 H 0.395 0.605 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.022 0.978 36 H 0.023 0.977 37 H 0.261 0.739 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.413 0.587 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 -29.324 5.446 30.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.067 3.933 4 C -0.243 4.243 5 C 0.101 3.899 6 N -0.339 5.339 7 C 0.397 3.603 8 O -0.454 6.454 9 N -0.385 5.385 10 C 0.016 3.984 11 C -0.025 4.025 12 C -0.559 4.559 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.153 4.153 21 C -0.096 4.096 22 C -0.001 4.001 23 N -0.305 5.305 24 C 0.294 3.706 25 C -0.230 4.230 26 O -0.404 6.404 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.152 0.848 31 H 0.240 0.760 32 H 0.228 0.772 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.248 0.752 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.712 -28.618 5.303 29.660 hybrid contribution -1.330 0.616 -0.243 1.486 sum 4.382 -28.002 5.060 28.791 Atomic orbital electron populations 1.23038 0.78084 1.03815 1.01621 1.85959 1.21635 1.26422 1.89445 1.18232 0.89949 0.84341 1.00745 1.20650 0.99871 0.90467 1.13280 1.17246 0.90627 0.84278 0.97788 1.42725 1.25683 1.10906 1.54613 1.16055 0.84665 0.80080 0.79474 1.90904 1.20564 1.82244 1.51644 1.45577 1.20579 1.14175 1.58137 1.21677 0.99209 0.82855 0.94654 1.19339 0.93376 0.91797 0.98015 1.21081 1.03232 0.97860 1.33722 0.92104 1.25005 0.94854 0.98892 0.95612 1.69964 1.09902 1.29390 1.44066 0.86445 0.78999 0.82503 0.79562 1.19535 1.20948 1.20937 1.21285 0.91944 0.99846 1.02261 1.21175 1.01658 0.89104 0.97647 1.17054 0.86650 0.87147 1.09243 1.43429 1.14247 1.11418 1.61419 1.20973 0.81731 0.90645 0.77214 1.21876 1.00195 0.95328 1.05555 1.90717 1.72780 1.34838 1.42097 0.88296 0.92495 0.92563 0.84823 0.75994 0.77169 0.92460 0.92500 0.95924 0.95885 0.92902 0.83324 0.82912 0.75161 0.88475 0.88550 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -2.89 9.90 -19.63 -0.19 -3.08 16 3 C 0.11 1.28 6.70 -39.09 -0.26 1.02 16 4 C -0.22 -2.47 8.95 -39.28 -0.35 -2.82 16 5 C 0.20 2.71 6.30 -83.63 -0.53 2.18 16 6 N -0.69 -9.14 5.35 -14.20 -0.08 -9.22 16 7 C 0.70 12.05 8.41 -86.91 -0.73 11.32 16 8 O -0.58 -12.07 13.77 5.29 0.07 -12.00 16 9 N -0.73 -12.55 5.56 -65.22 -0.36 -12.91 16 10 C 0.14 2.92 5.61 -4.04 -0.02 2.90 16 11 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 12 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 13 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 16 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.13 -2.03 8.69 -39.39 -0.34 -2.37 16 21 C -0.08 -1.07 8.71 -39.45 -0.34 -1.41 16 22 C 0.09 1.15 6.45 -83.41 -0.54 0.61 16 23 N -0.66 -6.13 5.29 -9.71 -0.05 -6.18 16 24 C 0.51 4.91 7.75 -10.98 -0.09 4.83 16 25 C -0.17 -0.81 10.31 36.00 0.37 -0.44 16 26 O -0.53 -7.43 14.27 5.55 0.08 -7.35 16 27 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 29 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 30 H 0.13 1.14 6.29 -52.49 -0.33 0.81 16 31 H 0.40 3.91 8.84 -40.82 -0.36 3.55 16 32 H 0.39 5.69 8.49 -40.82 -0.35 5.34 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.15 2.58 6.20 -52.49 -0.33 2.25 16 39 H 0.15 2.27 5.78 -52.48 -0.30 1.97 16 40 H 0.41 2.64 8.34 -40.82 -0.34 2.30 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -35.46 366.09 -7.42 -42.88 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.73 Total: 7.24 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -2.39 Total: 4.00 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.25 Total: -53.53 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.04 Total: -22.43 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.46 -7.42 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273101782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.101 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds