Wall clock time and date at job start Tue Mar 31 2020 13:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35965 * 117.00350 * 2 1 4 4 C 1.38490 * 120.04514 * 359.72762 * 3 2 1 5 5 C 1.38813 * 119.94893 * 179.72591 * 4 3 2 6 6 N 1.40091 * 119.97959 * 180.27462 * 5 4 3 7 7 C 1.34785 * 119.99749 * 215.33584 * 6 5 4 8 8 O 1.21587 * 119.99842 * 355.24550 * 7 6 5 9 9 N 1.34780 * 119.99566 * 175.23739 * 7 6 5 10 10 C 1.46500 * 119.99551 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46928 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46851 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00361 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99963 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99810 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00316 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46679 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46949 * 119.99812 * 16 14 12 19 19 H 1.48497 * 109.47201 * 240.00310 * 16 14 12 20 20 C 1.38872 * 120.03551 * 0.54318 * 5 4 3 21 21 C 1.38131 * 120.09550 * 359.72921 * 20 5 4 22 22 C 1.38709 * 120.05446 * 359.97438 * 21 20 5 23 23 N 1.40288 * 120.02374 * 179.97438 * 22 21 20 24 24 C 1.34782 * 119.99526 * 24.80417 * 23 22 21 25 25 C 1.50698 * 119.99918 * 185.55375 * 24 23 22 26 26 O 1.21294 * 120.00316 * 5.56196 * 24 23 22 27 27 H 1.09003 * 109.47305 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46715 * 60.00199 * 1 2 3 29 29 H 1.08995 * 109.47274 * 300.00111 * 1 2 3 30 30 H 1.07995 * 120.02286 * 359.97438 * 4 3 2 31 31 H 0.96996 * 120.00695 * 35.33588 * 6 5 4 32 32 H 0.96991 * 120.00480 * 0.02562 * 9 7 6 33 33 H 1.08996 * 109.47720 * 300.01085 * 10 9 7 34 34 H 1.09008 * 109.46714 * 60.00695 * 10 9 7 35 35 H 1.08999 * 109.47286 * 300.00154 * 11 10 9 36 36 H 1.08994 * 109.47158 * 60.00780 * 11 10 9 37 37 H 0.96996 * 119.99694 * 179.97438 * 15 14 12 38 38 H 1.07999 * 119.94862 * 179.70569 * 20 5 4 39 39 H 1.08007 * 119.97114 * 179.97438 * 21 20 5 40 40 H 0.96996 * 120.00530 * 204.81007 * 23 22 21 41 41 H 1.09001 * 109.46609 * 90.00064 * 25 24 23 42 42 H 1.08996 * 109.47404 * 210.00804 * 25 24 23 43 43 H 1.09000 * 109.47143 * 330.00866 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2930 2.3735 -0.0057 5 6 1.9253 3.6093 0.0001 6 7 1.1639 4.7852 0.0001 7 6 1.5997 5.8702 -0.6704 8 8 2.6927 5.8573 -1.2028 9 7 0.8237 6.9692 -0.7508 10 6 1.2976 8.1487 -1.4792 11 6 0.2345 9.2473 -1.4176 12 6 0.7217 10.4603 -2.1673 13 1 1.6923 10.4488 -2.6409 14 6 -0.0717 11.5851 -2.2489 15 7 -1.2539 11.5990 -1.6727 16 14 0.5319 13.0885 -3.1788 17 1 1.8836 12.8189 -3.7316 18 1 -0.4059 13.3931 -4.2893 19 1 0.5981 14.2488 -2.2544 20 6 3.3122 3.6804 0.0001 21 6 4.0652 2.5224 0.0001 22 6 3.4374 1.2855 0.0006 23 7 4.2027 0.1098 0.0000 24 6 5.4587 0.1232 0.4888 25 6 6.3247 -1.1048 0.3749 26 8 5.8920 1.1236 1.0206 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8899 30 1 0.2145 2.3183 -0.0106 31 1 0.3232 4.8187 0.4827 32 1 -0.0481 6.9796 -0.3259 33 1 2.2200 8.5102 -1.0247 34 1 1.4853 7.8822 -2.5194 35 1 -0.6881 8.8860 -1.8719 36 1 0.0472 9.5137 -0.3774 37 1 -1.8118 12.3904 -1.7297 38 1 3.8027 4.6426 -0.0002 39 1 5.1437 2.5801 -0.0002 40 1 3.8281 -0.7127 -0.3522 41 1 6.8833 -1.0699 -0.5605 42 1 7.0209 -1.1375 1.2129 43 1 5.6963 -1.9952 0.3896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273101782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:48 Heat of formation + Delta-G solvation = -100.990647 kcal Electronic energy + Delta-G solvation = -25899.581464 eV Core-core repulsion = 21944.286066 eV Total energy + Delta-G solvation = -3955.295398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.07135 -41.23988 -40.23768 -38.44630 -36.78046 -36.23691 -35.05236 -34.60810 -31.87297 -31.24509 -30.99456 -29.18249 -27.84546 -26.62833 -24.05729 -23.90323 -22.79671 -21.95303 -21.49483 -19.80937 -19.44638 -18.71411 -18.38635 -17.92587 -17.29674 -16.85112 -16.70891 -16.49192 -16.46711 -16.21709 -15.99427 -15.44853 -15.26564 -15.13370 -14.68544 -14.37452 -14.28957 -13.97499 -13.89477 -13.31039 -13.21703 -13.06562 -12.97372 -12.82226 -12.52121 -12.40857 -12.36841 -12.17189 -11.85912 -11.67398 -11.49182 -11.23561 -10.93606 -10.61447 -10.53297 -10.03833 -9.57366 -8.55114 -8.24522 -6.34212 0.10060 0.35002 1.40895 1.41699 1.50855 1.55869 1.59282 2.02583 2.07547 2.29222 2.40945 2.76239 3.10555 3.20653 3.75042 3.86180 4.09298 4.17814 4.34372 4.39047 4.46502 4.46521 4.50888 4.55302 4.62419 4.68343 4.70058 4.82615 4.86085 5.09931 5.11246 5.21075 5.24662 5.44835 5.48831 5.51068 5.59197 5.76724 5.79428 5.95861 6.16585 6.32120 6.47756 6.78949 6.97812 7.15641 7.34913 7.44729 8.87460 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023109 B = 0.002107 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.340583 B =13285.722583 C =14281.831241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.320 6.320 3 C 0.124 3.876 4 C -0.206 4.206 5 C 0.180 3.820 6 N -0.671 5.671 7 C 0.698 3.302 8 O -0.616 6.616 9 N -0.724 5.724 10 C 0.159 3.841 11 C 0.023 3.977 12 C -0.545 4.545 13 H 0.058 0.942 14 C 0.007 3.993 15 N -0.925 5.925 16 Si 0.964 3.036 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.277 1.277 20 C -0.155 4.155 21 C -0.090 4.090 22 C 0.090 3.910 23 N -0.650 5.650 24 C 0.499 3.501 25 C -0.160 4.160 26 O -0.579 6.579 27 H 0.125 0.875 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.167 0.833 31 H 0.425 0.575 32 H 0.410 0.590 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.011 0.989 36 H 0.010 0.990 37 H 0.266 0.734 38 H 0.118 0.882 39 H 0.137 0.863 40 H 0.428 0.572 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.310 -31.740 5.247 32.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.233 6.233 3 C 0.075 3.925 4 C -0.228 4.228 5 C 0.084 3.916 6 N -0.320 5.320 7 C 0.398 3.602 8 O -0.496 6.496 9 N -0.378 5.378 10 C 0.035 3.965 11 C -0.014 4.014 12 C -0.583 4.583 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.565 5.565 16 Si 0.789 3.211 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.177 4.177 21 C -0.111 4.111 22 C -0.006 4.006 23 N -0.296 5.296 24 C 0.290 3.710 25 C -0.219 4.219 26 O -0.459 6.459 27 H 0.143 0.857 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.184 0.816 31 H 0.263 0.737 32 H 0.246 0.754 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.267 0.733 41 H 0.132 0.868 42 H 0.116 0.884 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.524 -31.119 5.127 31.861 hybrid contribution -1.016 1.195 -0.145 1.576 sum 3.508 -29.924 4.982 30.538 Atomic orbital electron populations 1.23401 0.75963 1.05955 1.02384 1.85984 1.23682 1.24807 1.88846 1.18230 0.89624 0.85303 0.99293 1.20887 1.01445 0.89132 1.11331 1.17331 0.90042 0.85122 0.99145 1.42376 1.26176 1.09681 1.53765 1.16115 0.83997 0.80661 0.79431 1.90893 1.22307 1.83021 1.53346 1.45201 1.21295 1.13277 1.58057 1.21144 0.97597 0.83286 0.94450 1.19140 0.93624 0.92053 0.96610 1.21488 1.03370 0.99293 1.34195 0.92341 1.25856 0.94990 1.01909 0.96442 1.70057 1.10910 1.30433 1.45103 0.85404 0.78630 0.78709 0.78348 1.19065 1.20191 1.20283 1.21087 0.93152 0.98936 1.04504 1.21014 1.00980 0.89999 0.99061 1.17140 0.87726 0.87422 1.08292 1.43465 1.14105 1.11093 1.60978 1.21967 0.81822 0.91448 0.75803 1.21913 0.99817 0.93761 1.06369 1.90704 1.73654 1.37131 1.44376 0.85666 0.91847 0.91587 0.81560 0.73666 0.75375 0.93617 0.93524 0.97026 0.97118 0.92556 0.86420 0.84514 0.73264 0.86848 0.88434 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -4.70 9.90 -93.16 -0.92 -5.62 16 3 C 0.12 2.52 6.70 22.59 0.15 2.67 16 4 C -0.21 -4.18 8.95 22.47 0.20 -3.98 16 5 C 0.18 4.89 6.30 38.11 0.24 5.13 16 6 N -0.67 -17.33 5.35 -317.08 -1.70 -19.02 16 7 C 0.70 24.43 8.41 179.05 1.51 25.94 16 8 O -0.62 -26.87 13.77 -3.99 -0.05 -26.92 16 9 N -0.72 -24.93 5.56 -478.52 -2.66 -27.59 16 10 C 0.16 6.86 5.61 86.38 0.48 7.35 16 11 C 0.02 1.16 5.09 29.85 0.15 1.31 16 12 C -0.54 -30.41 9.11 25.60 0.23 -30.17 16 13 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 14 C 0.01 0.38 5.46 84.66 0.46 0.84 16 15 N -0.93 -53.90 13.29 21.45 0.28 -53.62 16 16 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 C -0.16 -5.06 8.69 22.40 0.19 -4.86 16 21 C -0.09 -2.70 8.71 22.36 0.19 -2.50 16 22 C 0.09 2.16 6.45 38.16 0.25 2.41 16 23 N -0.65 -11.30 5.29 -303.00 -1.60 -12.90 16 24 C 0.50 9.42 7.75 87.66 0.68 10.09 16 25 C -0.16 -1.18 10.31 71.24 0.73 -0.44 16 26 O -0.58 -17.00 14.27 -3.07 -0.04 -17.04 16 27 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.06 0.44 7.65 -2.39 -0.02 0.42 16 29 H 0.07 0.41 7.67 -2.39 -0.02 0.39 16 30 H 0.17 2.20 6.29 -2.91 -0.02 2.18 16 31 H 0.42 7.42 8.84 -92.71 -0.82 6.60 16 32 H 0.41 11.57 8.49 -92.72 -0.79 10.78 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 38 H 0.12 4.51 6.20 -2.91 -0.02 4.49 16 39 H 0.14 4.49 5.78 -2.91 -0.02 4.47 16 40 H 0.43 4.44 8.34 -92.71 -0.77 3.67 16 41 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -79.79 366.09 0.62 -79.17 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -1.30 Total: 22.76 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 6.59 Total: 15.03 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -5.67 Total: -113.13 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -1.02 Total: -49.59 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -79.79 0.62 -79.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273101782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.824 kcal (2) G-P(sol) polarization free energy of solvation -79.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds