Wall clock time and date at job start Tue Mar 31 2020 13:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34652 * 117.00174 * 2 1 4 4 O 1.21519 * 120.00156 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99901 * 180.02562 * 3 2 1 6 6 C 1.46500 * 120.00263 * 5.00525 * 5 3 2 7 7 C 1.40134 * 120.00254 * 185.00466 * 5 3 2 8 8 C 1.38849 * 120.00130 * 294.75557 * 7 5 3 9 9 C 1.38062 * 120.00196 * 180.27492 * 8 7 5 10 10 C 1.38859 * 119.99938 * 359.44120 * 9 8 7 11 11 N 1.40122 * 120.00332 * 180.25631 * 10 9 8 12 12 C 1.34783 * 119.99805 * 35.40183 * 11 10 9 13 13 O 1.21594 * 120.00029 * 355.47162 * 12 11 10 14 14 N 1.34773 * 120.00062 * 175.45957 * 12 11 10 15 15 C 1.46494 * 120.00452 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47834 * 180.02562 * 15 14 12 17 17 C 1.50693 * 109.47507 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00031 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00134 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99608 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99875 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47599 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47181 * 119.99807 * 21 19 17 24 24 H 1.48503 * 109.46769 * 239.99456 * 21 19 17 25 25 C 1.38850 * 119.99518 * 0.57777 * 10 9 8 26 26 C 1.38064 * 120.00279 * 359.70068 * 25 10 9 27 27 H 1.09002 * 109.46922 * 300.00169 * 1 2 3 28 28 H 1.09001 * 109.47222 * 60.00011 * 1 2 3 29 29 H 1.09002 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47367 * 270.00392 * 6 5 3 31 31 H 1.09002 * 109.47238 * 30.00092 * 6 5 3 32 32 H 1.09000 * 109.47346 * 150.00038 * 6 5 3 33 33 H 1.07997 * 120.00265 * 359.97438 * 8 7 5 34 34 H 1.08001 * 120.00447 * 179.71872 * 9 8 7 35 35 H 0.96994 * 120.00319 * 215.40106 * 11 10 9 36 36 H 0.97006 * 120.00080 * 0.02562 * 14 12 11 37 37 H 1.09004 * 109.47524 * 300.00887 * 15 14 12 38 38 H 1.09001 * 109.47028 * 60.00598 * 15 14 12 39 39 H 1.09004 * 109.46991 * 300.00848 * 16 15 14 40 40 H 1.09001 * 109.46623 * 59.99984 * 16 15 14 41 41 H 0.96998 * 119.99594 * 180.02562 * 20 19 17 42 42 H 1.08004 * 119.99866 * 179.67947 * 25 10 9 43 43 H 1.08005 * 119.99864 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1997 0.0000 4 8 1.4016 2.2189 -0.0005 5 7 3.4093 1.2702 -0.0005 6 6 4.2069 0.0464 -0.1118 7 6 4.0459 2.5141 0.1053 8 6 3.9073 3.4534 -0.9078 9 6 4.5391 4.6768 -0.8061 10 6 5.3037 4.9723 0.3147 11 7 5.9405 6.2159 0.4204 12 6 5.3447 7.3218 -0.0680 13 8 4.2939 7.2295 -0.6729 14 7 5.9134 8.5300 0.1142 15 6 5.2656 9.7321 -0.4162 16 6 6.1116 10.9604 -0.0747 17 6 5.4448 12.1970 -0.6198 18 1 4.5112 12.1151 -1.1565 19 6 6.0271 13.4330 -0.4342 20 7 7.1643 13.5326 0.2190 21 14 5.2002 14.9659 -1.1092 22 1 3.9408 14.5863 -1.7983 23 1 4.8931 15.8952 0.0076 24 1 6.1097 15.6347 -2.0740 25 6 5.4426 4.0328 1.3276 26 6 4.8154 2.8073 1.2233 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.4097 -0.3469 0.8843 31 1 3.6556 -0.6953 -0.6899 32 1 5.1486 0.2707 -0.6126 33 1 3.3092 3.2253 -1.7776 34 1 4.4350 5.4057 -1.5962 35 1 6.8102 6.2810 0.8451 36 1 6.7518 8.6037 0.5965 37 1 5.1707 9.6463 -1.4987 38 1 4.2758 9.8375 0.0280 39 1 6.2068 11.0464 1.0077 40 1 7.1012 10.8549 -0.5192 41 1 7.5737 14.4021 0.3499 42 1 6.0415 4.2607 2.1970 43 1 4.9239 2.0764 2.0111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273124600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:17 Heat of formation + Delta-G solvation = -70.720451 kcal Electronic energy + Delta-G solvation = -25706.694897 eV Core-core repulsion = 21752.712113 eV Total energy + Delta-G solvation = -3953.982784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13361 -40.35930 -38.91182 -36.99028 -35.98178 -34.91521 -34.16886 -32.84624 -31.09863 -30.07341 -28.84986 -28.07776 -26.68397 -24.82681 -23.21100 -23.05978 -21.29990 -20.81753 -20.47766 -18.54232 -18.31825 -17.78510 -17.47600 -16.96066 -16.36551 -16.05794 -15.59043 -15.02728 -14.72279 -14.53621 -14.36139 -14.24731 -13.99546 -13.73563 -13.56528 -13.25433 -13.16411 -13.02381 -12.67765 -12.53624 -12.34280 -12.29926 -11.59599 -11.21213 -11.09665 -11.07601 -10.82907 -10.63204 -10.47723 -10.27175 -9.91871 -9.60343 -9.43134 -9.27540 -9.02366 -8.62270 -8.41018 -7.96115 -6.11010 -4.13583 1.04004 1.29804 1.80818 2.48482 2.81644 3.28038 3.29000 3.35858 3.41427 3.55797 3.79039 4.35512 4.51426 4.71156 4.76332 4.80938 4.82210 4.89207 5.01286 5.14446 5.22099 5.26439 5.31356 5.32890 5.48311 5.64231 5.81769 5.89215 6.14418 6.22736 6.32847 6.34916 6.44668 6.49220 6.72318 6.87224 6.87880 7.00096 7.08811 7.52554 7.59471 7.87929 7.97845 8.16847 8.29761 8.78475 8.92879 9.51418 11.00662 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028646 B = 0.001924 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.220798 B =14546.897875 C =15264.100005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.370 6.370 3 C 0.646 3.354 4 O -0.552 6.552 5 N -0.552 5.552 6 C 0.086 3.914 7 C 0.118 3.882 8 C -0.078 4.078 9 C -0.110 4.110 10 C 0.182 3.818 11 N -0.693 5.693 12 C 0.696 3.304 13 O -0.577 6.577 14 N -0.731 5.731 15 C 0.138 3.862 16 C 0.012 3.988 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.142 4.142 26 C -0.096 4.096 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.406 0.594 36 H 0.395 0.605 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.131 0.869 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 -30.926 2.101 31.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.284 6.284 3 C 0.400 3.600 4 O -0.438 6.438 5 N -0.288 5.288 6 C -0.056 4.056 7 C 0.028 3.972 8 C -0.099 4.099 9 C -0.131 4.131 10 C 0.086 3.914 11 N -0.341 5.341 12 C 0.396 3.604 13 O -0.454 6.454 14 N -0.384 5.384 15 C 0.016 3.984 16 C -0.025 4.025 17 C -0.559 4.559 18 H 0.079 0.921 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.164 4.164 26 C -0.116 4.116 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.143 0.857 34 H 0.166 0.834 35 H 0.242 0.758 36 H 0.229 0.771 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.149 0.851 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.951 -30.485 1.589 30.781 hybrid contribution 0.337 0.974 0.238 1.058 sum -3.614 -29.511 1.827 29.788 Atomic orbital electron populations 1.23234 0.74202 1.03501 1.03007 1.86230 1.24280 1.30825 1.87039 1.18109 0.82951 0.82324 0.76587 1.91079 1.63896 1.34788 1.54045 1.43859 1.02164 1.07051 1.75710 1.21868 0.96199 0.85158 1.02371 1.17228 0.99096 0.85186 0.95665 1.21075 0.98066 0.92873 0.97857 1.21288 0.97798 0.96202 0.97802 1.17609 0.95695 0.84520 0.93616 1.42774 1.22747 1.05020 1.63530 1.16076 0.83725 0.80494 0.80056 1.90917 1.23224 1.85379 1.45908 1.45577 1.27239 1.05512 1.60078 1.21680 0.96852 0.82055 0.97835 1.19341 0.95267 0.90326 0.97604 1.21079 1.07930 0.91041 1.35871 0.92112 1.25000 0.94936 0.99280 0.95124 1.69964 1.17617 1.24513 1.41206 0.86446 0.79603 0.82721 0.78740 1.19546 1.20938 1.20943 1.20711 1.03795 0.93834 0.98032 1.20830 0.98135 0.96650 0.96013 0.91715 0.91705 0.87857 0.92146 0.90138 0.90330 0.85701 0.83396 0.75814 0.77123 0.92476 0.92477 0.95888 0.95882 0.92903 0.85094 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -3.53 9.45 -40.36 -0.38 -3.91 16 3 C 0.65 7.93 8.26 54.05 0.45 8.38 16 4 O -0.55 -8.87 15.62 -19.29 -0.30 -9.17 16 5 N -0.55 -5.69 2.94 -126.24 -0.37 -6.06 16 6 C 0.09 0.52 10.28 59.85 0.62 1.13 16 7 C 0.12 1.38 4.90 -83.61 -0.41 0.97 16 8 C -0.08 -1.03 9.20 -39.42 -0.36 -1.40 16 9 C -0.11 -1.58 8.69 -39.42 -0.34 -1.92 16 10 C 0.18 2.36 6.30 -83.61 -0.53 1.83 16 11 N -0.69 -8.83 5.35 -14.18 -0.08 -8.90 16 12 C 0.70 11.92 8.41 -86.92 -0.73 11.19 16 13 O -0.58 -12.10 13.80 5.28 0.07 -12.03 16 14 N -0.73 -12.46 5.56 -65.23 -0.36 -12.83 16 15 C 0.14 2.91 5.61 -4.05 -0.02 2.89 16 16 C 0.01 0.30 5.09 -27.89 -0.14 0.15 16 17 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 21 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C -0.14 -1.47 9.96 -39.42 -0.39 -1.86 16 26 C -0.10 -0.97 9.81 -39.42 -0.39 -1.35 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.42 7.46 -51.93 -0.39 0.03 16 32 H 0.08 0.39 8.05 -51.93 -0.42 -0.03 16 33 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.15 2.42 6.24 -52.49 -0.33 2.09 16 35 H 0.41 3.68 8.84 -40.82 -0.36 3.32 16 36 H 0.40 5.63 8.49 -40.82 -0.35 5.29 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 43 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -35.68 372.91 -7.71 -43.39 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.03 Total: 4.43 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -1.60 Total: 8.32 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.07 Total: -53.00 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.61 Total: -25.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.68 -7.71 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273124600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.331 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds