Wall clock time and date at job start Tue Mar 31 2020 13:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34652 * 117.00174 * 2 1 4 4 O 1.21519 * 120.00156 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99901 * 180.02562 * 3 2 1 6 6 C 1.46500 * 120.00263 * 5.00525 * 5 3 2 7 7 C 1.40134 * 120.00254 * 185.00466 * 5 3 2 8 8 C 1.38849 * 120.00130 * 294.75557 * 7 5 3 9 9 C 1.38062 * 120.00196 * 180.27492 * 8 7 5 10 10 C 1.38859 * 119.99938 * 359.44120 * 9 8 7 11 11 N 1.40122 * 120.00332 * 180.25631 * 10 9 8 12 12 C 1.34783 * 119.99805 * 35.40183 * 11 10 9 13 13 O 1.21594 * 120.00029 * 355.47162 * 12 11 10 14 14 N 1.34773 * 120.00062 * 175.45957 * 12 11 10 15 15 C 1.46494 * 120.00452 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47834 * 180.02562 * 15 14 12 17 17 C 1.50693 * 109.47507 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00031 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00134 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99608 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99875 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47599 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47181 * 119.99807 * 21 19 17 24 24 H 1.48503 * 109.46769 * 239.99456 * 21 19 17 25 25 C 1.38850 * 119.99518 * 0.57777 * 10 9 8 26 26 C 1.38064 * 120.00279 * 359.70068 * 25 10 9 27 27 H 1.09002 * 109.46922 * 300.00169 * 1 2 3 28 28 H 1.09001 * 109.47222 * 60.00011 * 1 2 3 29 29 H 1.09002 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47367 * 270.00392 * 6 5 3 31 31 H 1.09002 * 109.47238 * 30.00092 * 6 5 3 32 32 H 1.09000 * 109.47346 * 150.00038 * 6 5 3 33 33 H 1.07997 * 120.00265 * 359.97438 * 8 7 5 34 34 H 1.08001 * 120.00447 * 179.71872 * 9 8 7 35 35 H 0.96994 * 120.00319 * 215.40106 * 11 10 9 36 36 H 0.97006 * 120.00080 * 0.02562 * 14 12 11 37 37 H 1.09004 * 109.47524 * 300.00887 * 15 14 12 38 38 H 1.09001 * 109.47028 * 60.00598 * 15 14 12 39 39 H 1.09004 * 109.46991 * 300.00848 * 16 15 14 40 40 H 1.09001 * 109.46623 * 59.99984 * 16 15 14 41 41 H 0.96998 * 119.99594 * 180.02562 * 20 19 17 42 42 H 1.08004 * 119.99866 * 179.67947 * 25 10 9 43 43 H 1.08005 * 119.99864 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1997 0.0000 4 8 1.4016 2.2189 -0.0005 5 7 3.4093 1.2702 -0.0005 6 6 4.2069 0.0464 -0.1118 7 6 4.0459 2.5141 0.1053 8 6 3.9073 3.4534 -0.9078 9 6 4.5391 4.6768 -0.8061 10 6 5.3037 4.9723 0.3147 11 7 5.9405 6.2159 0.4204 12 6 5.3447 7.3218 -0.0680 13 8 4.2939 7.2295 -0.6729 14 7 5.9134 8.5300 0.1142 15 6 5.2656 9.7321 -0.4162 16 6 6.1116 10.9604 -0.0747 17 6 5.4448 12.1970 -0.6198 18 1 4.5112 12.1151 -1.1565 19 6 6.0271 13.4330 -0.4342 20 7 7.1643 13.5326 0.2190 21 14 5.2002 14.9659 -1.1092 22 1 3.9408 14.5863 -1.7983 23 1 4.8931 15.8952 0.0076 24 1 6.1097 15.6347 -2.0740 25 6 5.4426 4.0328 1.3276 26 6 4.8154 2.8073 1.2233 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.4097 -0.3469 0.8843 31 1 3.6556 -0.6953 -0.6899 32 1 5.1486 0.2707 -0.6126 33 1 3.3092 3.2253 -1.7776 34 1 4.4350 5.4057 -1.5962 35 1 6.8102 6.2810 0.8451 36 1 6.7518 8.6037 0.5965 37 1 5.1707 9.6463 -1.4987 38 1 4.2758 9.8375 0.0280 39 1 6.2068 11.0464 1.0077 40 1 7.1012 10.8549 -0.5192 41 1 7.5737 14.4021 0.3499 42 1 6.0415 4.2607 2.1970 43 1 4.9239 2.0764 2.0111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273124600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:16 Heat of formation + Delta-G solvation = -95.661268 kcal Electronic energy + Delta-G solvation = -25707.776412 eV Core-core repulsion = 21752.712113 eV Total energy + Delta-G solvation = -3955.064299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04797 -41.53284 -39.94387 -37.90784 -37.00579 -36.50831 -35.33731 -34.76635 -32.02886 -31.70719 -29.99879 -28.69136 -27.46008 -26.61837 -24.31679 -24.01298 -22.92383 -22.15051 -21.51972 -19.67552 -19.29086 -18.72544 -18.56803 -18.39613 -17.78882 -16.97389 -16.75417 -16.51391 -16.19866 -16.03233 -15.34353 -15.20248 -15.05141 -14.98651 -14.70599 -14.33443 -14.26067 -13.92804 -13.76444 -13.70486 -13.22970 -13.20823 -12.98775 -12.96622 -12.53837 -12.50917 -12.27196 -11.85638 -11.80887 -11.68975 -11.55043 -11.37562 -11.10219 -10.61062 -10.31451 -10.03456 -9.96610 -8.97717 -8.24470 -6.34115 0.07514 0.37660 1.03471 1.40794 1.41841 1.53249 1.56202 1.60325 2.00806 2.40888 2.70093 2.95215 3.10624 3.22509 3.88017 3.96814 4.15029 4.31950 4.32186 4.33131 4.38526 4.47561 4.50640 4.53670 4.65929 4.67081 4.76544 4.86212 4.90982 5.01247 5.09769 5.24901 5.27796 5.34916 5.44984 5.50203 5.54517 5.59370 5.78439 5.96652 5.97951 6.10558 6.16811 6.78985 6.99267 7.10822 7.35010 7.45605 8.87499 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028646 B = 0.001924 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.220798 B =14546.897875 C =15264.100005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.362 6.362 3 C 0.641 3.359 4 O -0.600 6.600 5 N -0.549 5.549 6 C 0.080 3.920 7 C 0.116 3.884 8 C -0.094 4.094 9 C -0.130 4.130 10 C 0.161 3.839 11 N -0.671 5.671 12 C 0.697 3.303 13 O -0.619 6.619 14 N -0.724 5.724 15 C 0.159 3.841 16 C 0.023 3.977 17 C -0.546 4.546 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.276 1.276 25 C -0.124 4.124 26 C -0.087 4.087 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.143 0.857 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.427 0.573 36 H 0.411 0.589 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.011 0.989 40 H 0.012 0.988 41 H 0.266 0.734 42 H 0.168 0.832 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 -32.886 3.503 33.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.275 6.275 3 C 0.397 3.603 4 O -0.490 6.490 5 N -0.285 5.285 6 C -0.060 4.060 7 C 0.026 3.974 8 C -0.114 4.114 9 C -0.152 4.152 10 C 0.065 3.935 11 N -0.321 5.321 12 C 0.397 3.603 13 O -0.499 6.499 14 N -0.378 5.378 15 C 0.035 3.965 16 C -0.014 4.014 17 C -0.584 4.584 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.564 5.564 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.145 4.145 26 C -0.106 4.106 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.161 0.839 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.266 0.734 36 H 0.247 0.753 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.029 0.971 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.185 0.815 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.206 -32.526 3.018 32.822 hybrid contribution 0.107 1.420 -0.192 1.437 sum -3.099 -31.105 2.825 31.387 Atomic orbital electron populations 1.23541 0.72762 1.05870 1.02410 1.86249 1.25641 1.29115 1.86543 1.18379 0.83497 0.82405 0.76066 1.91049 1.65153 1.36475 1.56353 1.44034 1.01855 1.07837 1.74726 1.22160 0.96216 0.83529 1.04091 1.17407 0.98906 0.85483 0.95646 1.21025 0.98522 0.93270 0.98578 1.21107 0.99556 0.96276 0.98211 1.17795 0.96492 0.84956 0.94248 1.42425 1.23270 1.03762 1.62608 1.16153 0.83254 0.81150 0.79750 1.90905 1.25273 1.86062 1.47696 1.45196 1.27727 1.04612 1.60276 1.21134 0.95781 0.82456 0.97129 1.19142 0.94919 0.90979 0.96405 1.21485 1.08177 0.92593 1.36170 0.92411 1.25842 0.95531 1.02417 0.95327 1.70055 1.18776 1.25512 1.42092 0.85411 0.78687 0.78793 0.78242 1.19140 1.20240 1.20189 1.21053 1.02837 0.92766 0.97824 1.21194 0.96560 0.97088 0.95800 0.92305 0.92428 0.83915 0.89964 0.89310 0.89015 0.86845 0.86422 0.73403 0.75299 0.93545 0.93763 0.97066 0.96966 0.92546 0.81473 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 10.56 113.37 1.20 1.80 16 2 O -0.36 -6.44 9.45 -55.61 -0.53 -6.96 16 3 C 0.64 15.42 8.26 129.79 1.07 16.49 16 4 O -0.60 -19.78 15.62 19.78 0.31 -19.48 16 5 N -0.55 -10.50 2.94 -783.70 -2.30 -12.80 16 6 C 0.08 0.74 10.28 127.77 1.31 2.06 16 7 C 0.12 2.57 4.90 38.11 0.19 2.76 16 8 C -0.09 -2.56 9.20 22.37 0.21 -2.36 16 9 C -0.13 -3.91 8.69 22.38 0.19 -3.72 16 10 C 0.16 4.02 6.30 38.11 0.24 4.26 16 11 N -0.67 -16.40 5.35 -317.04 -1.70 -18.10 16 12 C 0.70 24.03 8.41 179.05 1.51 25.53 16 13 O -0.62 -27.00 13.80 -4.01 -0.06 -27.05 16 14 N -0.72 -24.72 5.56 -478.53 -2.66 -27.38 16 15 C 0.16 6.86 5.61 86.38 0.48 7.35 16 16 C 0.02 1.15 5.09 29.85 0.15 1.30 16 17 C -0.55 -30.51 9.11 25.60 0.23 -30.27 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 19 C 0.01 0.43 5.46 84.66 0.46 0.89 16 20 N -0.92 -53.83 13.29 21.45 0.28 -53.54 16 21 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 25 C -0.12 -2.17 9.96 22.37 0.22 -1.95 16 26 C -0.09 -1.46 9.81 22.38 0.22 -1.25 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.70 7.46 -2.39 -0.02 0.68 16 32 H 0.09 0.63 8.05 -2.39 -0.02 0.61 16 33 H 0.11 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.12 4.21 6.24 -2.91 -0.02 4.19 16 35 H 0.43 6.76 8.84 -92.71 -0.82 5.94 16 36 H 0.41 11.41 8.49 -92.70 -0.79 10.62 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 43 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -79.90 372.91 2.51 -77.39 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -0.56 Total: 19.17 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 7.69 Total: 22.90 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -6.37 Total: -111.81 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -0.27 Total: -53.49 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -79.90 2.51 -77.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273124600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.270 kcal (2) G-P(sol) polarization free energy of solvation -79.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds