Wall clock time and date at job start Tue Mar 31 2020 13:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41601 * 114.00190 * 2 1 4 4 C 1.46498 * 120.00285 * 275.42709 * 3 2 1 5 5 C 1.34776 * 120.00043 * 95.41799 * 3 2 1 6 6 O 1.21585 * 120.00410 * 186.08502 * 5 3 2 7 7 C 1.47590 * 120.00079 * 6.08994 * 5 3 2 8 8 C 1.39754 * 120.07629 * 195.84786 * 7 5 3 9 9 C 1.37656 * 119.92721 * 180.27627 * 8 7 5 10 10 C 1.39142 * 120.07001 * 359.51273 * 9 8 7 11 11 N 1.39438 * 119.92490 * 180.23208 * 10 9 8 12 12 C 1.34778 * 119.99960 * 213.57231 * 11 10 9 13 13 O 1.21581 * 120.00086 * 5.25498 * 12 11 10 14 14 N 1.34775 * 119.99697 * 185.25103 * 12 11 10 15 15 C 1.46495 * 119.99779 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47156 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47502 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99587 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00306 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99576 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99935 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47402 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47335 * 120.00077 * 21 19 17 24 24 H 1.48508 * 109.47052 * 239.99975 * 21 19 17 25 25 C 1.39134 * 120.14897 * 0.46689 * 10 9 8 26 26 C 1.37661 * 120.07594 * 359.79069 * 25 10 9 27 27 H 1.09007 * 109.47301 * 299.99815 * 1 2 3 28 28 H 1.09000 * 109.47316 * 60.00044 * 1 2 3 29 29 H 1.09000 * 109.46863 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46511 * 269.99949 * 4 3 2 31 31 H 1.09003 * 109.46976 * 29.99297 * 4 3 2 32 32 H 1.08994 * 109.47764 * 149.99436 * 4 3 2 33 33 H 1.08003 * 120.03289 * 359.97438 * 8 7 5 34 34 H 1.07998 * 119.96772 * 179.72876 * 9 8 7 35 35 H 0.96998 * 119.99408 * 33.57506 * 11 10 9 36 36 H 0.96996 * 120.00120 * 0.02562 * 14 12 11 37 37 H 1.09001 * 109.47710 * 300.00285 * 15 14 12 38 38 H 1.09000 * 109.47118 * 60.00197 * 15 14 12 39 39 H 1.08997 * 109.47277 * 300.00275 * 16 15 14 40 40 H 1.09000 * 109.47050 * 60.00028 * 16 15 14 41 41 H 0.97000 * 119.99540 * 179.97438 * 20 19 17 42 42 H 1.08001 * 119.96326 * 179.76219 * 25 10 9 43 43 H 1.07996 * 120.03904 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.1933 2.0116 -1.2630 5 6 2.3798 1.8644 1.1620 6 8 2.7710 3.0155 1.1755 7 6 2.3154 1.0921 2.4181 8 6 2.3782 1.7506 3.6491 9 6 2.3237 1.0268 4.8187 10 6 2.1959 -0.3581 4.7763 11 7 2.1360 -1.0878 5.9629 12 6 2.6708 -2.3236 6.0218 13 8 3.2885 -2.7646 5.0720 14 7 2.5208 -3.0704 7.1336 15 6 3.1016 -4.4138 7.1974 16 6 2.7878 -5.0410 8.5572 17 6 3.3847 -6.4233 8.6227 18 1 3.9334 -6.8150 7.7789 19 6 3.2312 -7.1874 9.7601 20 7 2.5634 -6.7101 10.7877 21 14 3.9717 -8.9003 9.8414 22 1 4.6678 -9.1999 8.5643 23 1 4.9430 -8.9670 10.9626 24 1 2.8923 -9.8963 10.0617 25 6 2.1326 -1.0168 3.5524 26 6 2.1919 -0.2995 2.3789 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1747 1.7735 -1.6733 31 1 1.4208 1.7107 -1.9707 32 1 2.1246 3.0847 -1.0847 33 1 2.4744 2.8258 3.6827 34 1 2.3766 1.5346 5.7704 35 1 1.7095 -0.7061 6.7460 36 1 2.0277 -2.7187 7.8913 37 1 2.6767 -5.0314 6.4061 38 1 4.1819 -4.3492 7.0674 39 1 3.2124 -4.4237 9.3488 40 1 1.7075 -5.1057 8.6869 41 1 2.4552 -7.2478 11.5877 42 1 2.0373 -2.0922 3.5229 43 1 2.1432 -0.8114 1.4293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273250400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:11 Heat of formation + Delta-G solvation = -19.624005 kcal Electronic energy + Delta-G solvation = -25908.871171 eV Core-core repulsion = 21957.104095 eV Total energy + Delta-G solvation = -3951.767076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.79523 -40.11065 -38.30023 -37.76018 -35.21342 -34.58743 -33.38737 -32.92059 -31.15147 -30.57016 -29.27359 -27.73721 -26.52267 -24.90295 -23.21142 -22.98358 -21.22923 -20.86355 -20.53006 -18.56378 -18.44799 -17.65749 -17.01303 -16.54715 -16.36945 -15.76955 -15.39111 -15.13618 -14.77016 -14.68707 -14.56295 -14.36077 -14.13867 -13.76996 -13.54639 -13.47873 -13.22654 -13.08163 -12.66282 -12.63451 -12.33134 -12.22843 -11.54212 -11.25229 -11.10808 -10.90068 -10.65986 -10.54223 -10.34630 -10.13613 -10.00609 -9.64500 -9.43980 -9.31166 -9.07091 -8.69474 -8.45554 -8.12113 -6.13864 -4.16691 0.68198 1.31858 1.45943 2.46804 2.74618 3.25873 3.29022 3.33809 3.38956 3.59849 3.81188 4.30554 4.45228 4.62225 4.75666 4.80620 4.83985 4.85179 4.90587 5.03647 5.16243 5.23617 5.25410 5.31285 5.36750 5.47827 5.92393 5.94857 6.04215 6.08446 6.25883 6.27992 6.29494 6.43465 6.67056 6.79870 6.89618 7.00023 7.01199 7.48517 7.55466 7.70525 7.84729 8.09455 8.24860 8.69513 8.89586 9.48492 10.97774 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028285 B = 0.001996 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.688922 B =14024.548939 C =14590.049242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 O -0.139 6.139 3 N -0.482 5.482 4 C 0.084 3.916 5 C 0.579 3.421 6 O -0.526 6.526 7 C -0.177 4.177 8 C -0.035 4.035 9 C -0.170 4.170 10 C 0.212 3.788 11 N -0.691 5.691 12 C 0.696 3.304 13 O -0.575 6.575 14 N -0.730 5.730 15 C 0.138 3.862 16 C 0.012 3.988 17 C -0.521 4.521 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.140 4.140 26 C -0.054 4.054 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.408 0.592 36 H 0.396 0.604 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.262 0.738 42 H 0.144 0.856 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.051 18.607 -19.071 27.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 O -0.142 6.142 3 N -0.262 5.262 4 C -0.056 4.056 5 C 0.372 3.628 6 O -0.404 6.404 7 C -0.181 4.181 8 C -0.054 4.054 9 C -0.191 4.191 10 C 0.115 3.885 11 N -0.338 5.338 12 C 0.396 3.604 13 O -0.452 6.452 14 N -0.383 5.383 15 C 0.016 3.984 16 C -0.025 4.025 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.160 4.160 26 C -0.073 4.073 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.129 0.871 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.243 0.757 36 H 0.229 0.771 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.161 0.839 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.204 18.461 -19.697 27.699 hybrid contribution -0.418 -0.696 0.973 1.267 sum -6.621 17.765 -18.724 26.646 Atomic orbital electron populations 1.23410 0.81342 1.04325 1.01587 1.90569 1.20488 1.06944 1.96207 1.49840 1.58993 1.10103 1.07287 1.21919 1.02375 0.97347 0.83968 1.18431 0.76346 0.85411 0.82612 1.90811 1.47853 1.16563 1.85127 1.19618 1.11961 0.94088 0.92473 1.20931 0.94184 1.00120 0.90183 1.20791 1.07144 0.92160 0.99021 1.17827 0.94436 0.90387 0.85874 1.42771 1.61174 1.16609 1.13279 1.16075 0.79889 0.80088 0.84360 1.90931 1.45584 1.71796 1.36848 1.45607 1.58544 1.18363 1.15760 1.21697 0.97227 0.78209 1.01314 1.19342 0.97696 0.95845 0.89650 1.21071 1.34680 0.99458 1.00770 0.92107 1.25002 0.95175 0.98613 0.95561 1.69963 1.41025 1.37473 1.04803 0.86443 0.78949 0.83904 0.78189 1.19542 1.20925 1.20932 1.21288 1.02697 1.01665 0.90400 1.21987 0.93357 0.92554 0.99432 0.92502 0.92723 0.87135 0.91472 0.90563 0.89230 0.84730 0.85036 0.75658 0.77056 0.92415 0.92432 0.95883 0.95879 0.92872 0.83868 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 11.30 101.05 1.14 1.09 16 2 O -0.14 -1.20 7.54 -11.47 -0.09 -1.29 16 3 N -0.48 -4.66 3.35 -68.13 -0.23 -4.89 16 4 C 0.08 0.57 10.83 59.85 0.65 1.22 16 5 C 0.58 6.97 7.64 -12.45 -0.10 6.87 16 6 O -0.53 -7.45 16.00 5.29 0.08 -7.36 16 7 C -0.18 -2.11 5.83 -104.95 -0.61 -2.72 16 8 C -0.03 -0.38 9.58 -39.23 -0.38 -0.76 16 9 C -0.17 -1.79 9.94 -39.46 -0.39 -2.19 16 10 C 0.21 2.66 6.28 -83.73 -0.53 2.13 16 11 N -0.69 -8.45 5.33 -14.22 -0.08 -8.52 16 12 C 0.70 11.38 8.29 -86.92 -0.72 10.66 16 13 O -0.57 -11.51 14.00 5.29 0.07 -11.44 16 14 N -0.73 -11.97 5.56 -65.23 -0.36 -12.33 16 15 C 0.14 2.81 5.61 -4.04 -0.02 2.79 16 16 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 17 C -0.52 -14.14 9.11 -34.44 -0.31 -14.45 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 21 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.14 -1.87 8.62 -39.46 -0.34 -2.21 16 26 C -0.05 -0.65 8.82 -39.22 -0.35 -0.99 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.63 7.35 -51.93 -0.38 0.24 16 33 H 0.13 1.34 7.73 -52.48 -0.41 0.94 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.41 3.55 8.83 -40.82 -0.36 3.19 16 36 H 0.40 5.43 8.49 -40.82 -0.35 5.08 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.14 2.15 6.39 -52.49 -0.34 1.82 16 43 H 0.15 1.69 5.04 -52.58 -0.26 1.42 16 LS Contribution 369.56 15.07 5.57 5.57 Total: -1.00 -33.98 369.56 -7.37 -41.35 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.86 Total: 4.65 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -2.19 Total: 3.12 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.07 Total: -50.65 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.07 Total: -20.08 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.98 -7.37 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273250400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.721 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds