Wall clock time and date at job start Tue Mar 31 2020 13:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41601 * 114.00190 * 2 1 4 4 C 1.46498 * 120.00285 * 275.42709 * 3 2 1 5 5 C 1.34776 * 120.00043 * 95.41799 * 3 2 1 6 6 O 1.21585 * 120.00410 * 186.08502 * 5 3 2 7 7 C 1.47590 * 120.00079 * 6.08994 * 5 3 2 8 8 C 1.39754 * 120.07629 * 195.84786 * 7 5 3 9 9 C 1.37656 * 119.92721 * 180.27627 * 8 7 5 10 10 C 1.39142 * 120.07001 * 359.51273 * 9 8 7 11 11 N 1.39438 * 119.92490 * 180.23208 * 10 9 8 12 12 C 1.34778 * 119.99960 * 213.57231 * 11 10 9 13 13 O 1.21581 * 120.00086 * 5.25498 * 12 11 10 14 14 N 1.34775 * 119.99697 * 185.25103 * 12 11 10 15 15 C 1.46495 * 119.99779 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47156 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47502 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99587 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00306 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99576 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99935 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47402 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47335 * 120.00077 * 21 19 17 24 24 H 1.48508 * 109.47052 * 239.99975 * 21 19 17 25 25 C 1.39134 * 120.14897 * 0.46689 * 10 9 8 26 26 C 1.37661 * 120.07594 * 359.79069 * 25 10 9 27 27 H 1.09007 * 109.47301 * 299.99815 * 1 2 3 28 28 H 1.09000 * 109.47316 * 60.00044 * 1 2 3 29 29 H 1.09000 * 109.46863 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46511 * 269.99949 * 4 3 2 31 31 H 1.09003 * 109.46976 * 29.99297 * 4 3 2 32 32 H 1.08994 * 109.47764 * 149.99436 * 4 3 2 33 33 H 1.08003 * 120.03289 * 359.97438 * 8 7 5 34 34 H 1.07998 * 119.96772 * 179.72876 * 9 8 7 35 35 H 0.96998 * 119.99408 * 33.57506 * 11 10 9 36 36 H 0.96996 * 120.00120 * 0.02562 * 14 12 11 37 37 H 1.09001 * 109.47710 * 300.00285 * 15 14 12 38 38 H 1.09000 * 109.47118 * 60.00197 * 15 14 12 39 39 H 1.08997 * 109.47277 * 300.00275 * 16 15 14 40 40 H 1.09000 * 109.47050 * 60.00028 * 16 15 14 41 41 H 0.97000 * 119.99540 * 179.97438 * 20 19 17 42 42 H 1.08001 * 119.96326 * 179.76219 * 25 10 9 43 43 H 1.07996 * 120.03904 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.1933 2.0116 -1.2630 5 6 2.3798 1.8644 1.1620 6 8 2.7710 3.0155 1.1755 7 6 2.3154 1.0921 2.4181 8 6 2.3782 1.7506 3.6491 9 6 2.3237 1.0268 4.8187 10 6 2.1959 -0.3581 4.7763 11 7 2.1360 -1.0878 5.9629 12 6 2.6708 -2.3236 6.0218 13 8 3.2885 -2.7646 5.0720 14 7 2.5208 -3.0704 7.1336 15 6 3.1016 -4.4138 7.1974 16 6 2.7878 -5.0410 8.5572 17 6 3.3847 -6.4233 8.6227 18 1 3.9334 -6.8150 7.7789 19 6 3.2312 -7.1874 9.7601 20 7 2.5634 -6.7101 10.7877 21 14 3.9717 -8.9003 9.8414 22 1 4.6678 -9.1999 8.5643 23 1 4.9430 -8.9670 10.9626 24 1 2.8923 -9.8963 10.0617 25 6 2.1326 -1.0168 3.5524 26 6 2.1919 -0.2995 2.3789 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1747 1.7735 -1.6733 31 1 1.4208 1.7107 -1.9707 32 1 2.1246 3.0847 -1.0847 33 1 2.4744 2.8258 3.6827 34 1 2.3766 1.5346 5.7704 35 1 1.7095 -0.7061 6.7460 36 1 2.0277 -2.7187 7.8913 37 1 2.6767 -5.0314 6.4061 38 1 4.1819 -4.3492 7.0674 39 1 3.2124 -4.4237 9.3488 40 1 1.7075 -5.1057 8.6869 41 1 2.4552 -7.2478 11.5877 42 1 2.0373 -2.0922 3.5229 43 1 2.1432 -0.8114 1.4293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273250400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:10 Heat of formation + Delta-G solvation = -42.772930 kcal Electronic energy + Delta-G solvation = -25909.874983 eV Core-core repulsion = 21957.104095 eV Total energy + Delta-G solvation = -3952.770889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.85942 -41.11854 -39.33011 -38.52142 -36.73331 -35.82592 -34.83600 -34.09240 -32.08636 -31.93418 -30.67106 -28.37163 -27.29008 -26.61176 -24.33221 -23.91903 -22.86857 -22.06259 -21.50288 -19.68180 -19.36640 -18.75992 -18.42935 -17.79295 -17.23153 -16.90076 -16.50909 -16.45316 -16.21252 -15.84387 -15.44400 -15.39753 -15.24525 -15.14022 -14.72956 -14.34153 -14.28081 -14.09487 -13.72632 -13.63268 -13.38389 -13.20824 -12.96382 -12.80957 -12.51638 -12.39210 -12.26673 -11.74778 -11.66736 -11.58556 -11.39881 -11.15527 -10.91350 -10.60537 -10.19732 -10.09234 -9.98756 -9.14918 -8.23903 -6.33508 -0.26641 0.41308 0.78223 1.41551 1.42252 1.47501 1.55557 1.60761 2.05269 2.41367 2.79982 2.91288 3.11443 3.19406 3.88028 3.92241 4.01115 4.31088 4.35996 4.37801 4.40109 4.40939 4.48139 4.52016 4.52411 4.58195 4.74627 4.81835 4.87121 5.05736 5.11464 5.22981 5.23955 5.25540 5.36003 5.46484 5.50102 5.60088 5.78681 5.92415 5.94215 6.17102 6.25086 6.79929 6.85793 6.94769 7.35725 7.41692 8.88039 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028285 B = 0.001996 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.688922 B =14024.548939 C =14590.049242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 O -0.149 6.149 3 N -0.481 5.481 4 C 0.079 3.921 5 C 0.574 3.426 6 O -0.555 6.555 7 C -0.183 4.183 8 C -0.037 4.037 9 C -0.154 4.154 10 C 0.195 3.805 11 N -0.672 5.672 12 C 0.698 3.302 13 O -0.613 6.613 14 N -0.723 5.723 15 C 0.159 3.841 16 C 0.022 3.978 17 C -0.544 4.544 18 H 0.059 0.941 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.277 1.277 25 C -0.155 4.155 26 C -0.051 4.051 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.163 0.837 35 H 0.427 0.573 36 H 0.411 0.589 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.010 0.990 40 H 0.011 0.989 41 H 0.265 0.735 42 H 0.122 0.878 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 19.179 -19.661 28.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 O -0.153 6.153 3 N -0.259 5.259 4 C -0.060 4.060 5 C 0.367 3.633 6 O -0.435 6.435 7 C -0.187 4.187 8 C -0.057 4.057 9 C -0.175 4.175 10 C 0.098 3.902 11 N -0.320 5.320 12 C 0.399 3.601 13 O -0.493 6.493 14 N -0.377 5.377 15 C 0.035 3.965 16 C -0.015 4.015 17 C -0.583 4.583 18 H 0.077 0.923 19 C -0.192 4.192 20 N -0.565 5.565 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.203 1.203 25 C -0.176 4.176 26 C -0.070 4.070 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.147 0.853 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.165 0.835 34 H 0.180 0.820 35 H 0.266 0.734 36 H 0.247 0.753 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.028 0.972 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.632 19.069 -20.297 28.628 hybrid contribution -0.359 -0.817 1.065 1.389 sum -6.991 18.252 -19.232 27.420 Atomic orbital electron populations 1.23608 0.79650 1.05676 1.02099 1.90534 1.22220 1.06282 1.96258 1.49870 1.58205 1.10347 1.07512 1.22125 1.03698 0.96941 0.83232 1.18451 0.76406 0.85156 0.83304 1.90790 1.49384 1.17553 1.85756 1.19803 1.11667 0.94066 0.93163 1.21160 0.93646 1.00825 0.90023 1.21023 1.05178 0.91071 1.00222 1.17989 0.95612 0.91214 0.85419 1.42432 1.60408 1.15043 1.14120 1.16098 0.79607 0.80985 0.83450 1.90913 1.47303 1.72954 1.38083 1.45234 1.58698 1.17161 1.16656 1.21151 0.96609 0.79890 0.98843 1.19145 0.96452 0.94850 0.91067 1.21491 1.34860 1.01018 1.00899 0.92250 1.25850 0.95563 1.02579 0.95227 1.70057 1.42077 1.39035 1.05368 0.85413 0.78257 0.79131 0.78345 1.18971 1.20365 1.20291 1.21208 1.03989 1.00802 0.91561 1.21978 0.93160 0.92606 0.99233 0.93159 0.91010 0.85325 0.90979 0.87881 0.89550 0.83511 0.81985 0.73411 0.75341 0.93293 0.93532 0.97153 0.97067 0.92586 0.85994 0.82345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.13 11.30 113.37 1.28 1.15 16 2 O -0.15 -2.41 7.54 -38.79 -0.29 -2.71 16 3 N -0.48 -8.79 3.35 -487.73 -1.64 -10.42 16 4 C 0.08 0.96 10.83 127.77 1.38 2.34 16 5 C 0.57 13.45 7.64 86.71 0.66 14.11 16 6 O -0.55 -15.46 16.00 -3.98 -0.06 -15.52 16 7 C -0.18 -4.21 5.83 -20.08 -0.12 -4.33 16 8 C -0.04 -0.76 9.58 22.50 0.22 -0.54 16 9 C -0.15 -2.91 9.94 22.35 0.22 -2.69 16 10 C 0.19 4.64 6.28 38.36 0.24 4.88 16 11 N -0.67 -15.49 5.33 -317.16 -1.69 -17.18 16 12 C 0.70 22.52 8.29 179.05 1.48 24.00 16 13 O -0.61 -24.78 14.00 -3.97 -0.06 -24.84 16 14 N -0.72 -23.40 5.56 -478.55 -2.66 -26.06 16 15 C 0.16 6.55 5.61 86.38 0.48 7.03 16 16 C 0.02 1.09 5.09 29.85 0.15 1.24 16 17 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 18 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 19 C 0.01 0.36 5.46 84.65 0.46 0.82 16 20 N -0.93 -53.26 13.29 21.45 0.28 -52.98 16 21 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 C -0.15 -4.13 8.62 22.35 0.19 -3.94 16 26 C -0.05 -1.20 8.82 22.50 0.20 -1.00 16 27 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 29 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 1.13 7.35 -2.39 -0.02 1.11 16 33 H 0.15 2.66 7.73 -2.91 -0.02 2.64 16 34 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.43 6.46 8.83 -92.71 -0.82 5.64 16 36 H 0.41 10.87 8.49 -92.71 -0.79 10.08 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.12 3.79 6.39 -2.91 -0.02 3.77 16 43 H 0.16 3.46 5.04 -4.29 -0.02 3.44 16 Total: -1.00 -73.26 369.56 2.45 -70.81 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.56 Total: 20.22 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 7.10 Total: 13.61 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -5.70 Total: -106.63 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -0.41 Total: -43.06 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -73.26 2.45 -70.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273250400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.033 kcal (2) G-P(sol) polarization free energy of solvation -73.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds