Wall clock time and date at job start Tue Mar 31 2020 13:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 119.99923 * 2 1 4 4 O 1.21583 * 120.00217 * 359.97438 * 3 2 1 5 5 C 1.47613 * 119.99987 * 179.97438 * 3 2 1 6 6 C 1.39717 * 120.06127 * 359.97179 * 5 3 2 7 7 C 1.37800 * 120.03033 * 180.02562 * 6 5 3 8 8 C 1.38816 * 120.16600 * 359.97438 * 7 6 5 9 9 O 1.35785 * 119.93311 * 180.27852 * 8 7 6 10 10 C 1.42904 * 117.00250 * 359.72844 * 9 8 7 11 11 C 1.39527 * 120.12701 * 0.02562 * 8 7 6 12 12 N 1.40186 * 120.01359 * 180.02562 * 11 8 7 13 13 C 1.34779 * 119.99842 * 204.78008 * 12 11 8 14 14 O 1.21592 * 119.99839 * 5.62732 * 13 12 11 15 15 N 1.34780 * 120.00302 * 185.63498 * 13 12 11 16 16 C 1.46493 * 120.00124 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 13 18 18 C 1.50695 * 109.47225 * 179.97438 * 17 16 15 19 19 H 1.08007 * 120.00471 * 0.02562 * 18 17 16 20 20 C 1.37885 * 120.00105 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99520 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46855 * 60.00510 * 22 20 18 24 24 H 1.48499 * 109.47056 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47259 * 300.00101 * 22 20 18 26 26 C 1.38286 * 119.96500 * 359.97438 * 11 8 7 27 27 H 1.09010 * 109.46880 * 60.00490 * 1 2 3 28 28 H 1.08996 * 109.47085 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47375 * 300.00680 * 1 2 3 30 30 H 0.97000 * 119.99733 * 179.97438 * 2 1 3 31 31 H 1.07995 * 119.98659 * 0.02852 * 6 5 3 32 32 H 1.08000 * 119.91545 * 180.02562 * 7 6 5 33 33 H 1.09005 * 109.47166 * 179.97438 * 10 9 8 34 34 H 1.09002 * 109.46972 * 299.99464 * 10 9 8 35 35 H 1.08996 * 109.47399 * 59.99649 * 10 9 8 36 36 H 0.96996 * 120.00884 * 24.77569 * 12 11 8 37 37 H 0.96998 * 119.99356 * 359.97438 * 15 13 12 38 38 H 1.09007 * 109.47034 * 299.99578 * 16 15 13 39 39 H 1.08995 * 109.47690 * 59.99540 * 16 15 13 40 40 H 1.09007 * 109.46907 * 299.99814 * 17 16 15 41 41 H 1.08996 * 109.47254 * 59.99810 * 17 16 15 42 42 H 0.97005 * 119.99637 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.07761 * 179.97438 * 26 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 -0.0005 5 6 3.6150 1.1672 0.0006 6 6 4.3149 -0.0420 0.0017 7 6 5.6929 -0.0413 0.0028 8 6 6.3898 1.1593 0.0022 9 8 7.7476 1.1545 -0.0025 10 6 8.3920 -0.1210 -0.0006 11 6 5.6977 2.3708 0.0011 12 7 6.4039 3.5818 -0.0001 13 6 5.8278 4.6982 0.4881 14 8 4.7373 4.6359 1.0222 15 7 6.4605 5.8837 0.3842 16 6 5.8346 7.0971 0.9153 17 6 6.7548 8.2947 0.6704 18 6 6.1106 9.5429 1.2162 19 1 5.1420 9.4877 1.6908 20 6 6.7583 10.7556 1.1107 21 7 7.9380 10.8229 0.5333 22 14 5.9596 12.3030 1.7866 23 1 5.7298 12.1448 3.2452 24 1 6.8532 13.4652 1.5501 25 1 4.6611 12.5291 1.1026 26 6 4.3148 2.3762 0.0000 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9500 -0.8401 0.0004 31 1 3.7757 -0.9778 0.0017 32 1 6.2320 -0.9771 0.0032 33 1 9.4731 0.0180 -0.0052 34 1 8.1003 -0.6741 0.8923 35 1 8.0941 -0.6799 -0.8876 36 1 7.3070 3.6164 -0.3521 37 1 7.3306 5.9333 -0.0417 38 1 4.8807 7.2629 0.4145 39 1 5.6674 6.9809 1.9861 40 1 7.7085 8.1286 1.1715 41 1 6.9223 8.4112 -0.4003 42 1 8.3939 11.6760 0.4594 43 1 3.7773 3.3129 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273301266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:14 Heat of formation + Delta-G solvation = -72.536243 kcal Electronic energy + Delta-G solvation = -26142.507565 eV Core-core repulsion = 22188.446042 eV Total energy + Delta-G solvation = -3954.061523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04943 -39.72348 -39.43009 -37.23782 -35.21671 -34.77886 -34.45284 -32.84896 -30.70838 -30.45188 -28.99394 -28.06213 -26.60044 -24.82197 -23.33240 -22.96261 -21.08817 -20.69614 -20.48195 -18.93045 -18.10759 -17.95778 -16.71512 -16.50920 -16.20587 -16.07248 -15.57617 -15.32530 -15.22486 -14.61091 -14.49899 -14.29964 -14.13554 -13.81738 -13.60596 -13.31897 -13.16052 -12.99154 -12.70346 -12.52250 -12.27210 -12.20654 -11.55591 -11.36442 -11.17981 -11.02116 -10.63377 -10.61905 -10.26589 -10.07759 -9.84841 -9.54325 -9.36094 -9.25777 -8.79974 -8.56060 -8.35912 -7.85561 -6.06786 -4.09334 0.71208 1.13883 2.67306 2.75322 2.90029 3.05446 3.34411 3.37684 3.41601 3.41859 3.80629 4.35009 4.43799 4.49998 4.59815 4.64730 4.76146 4.80095 4.95953 5.03147 5.13316 5.27103 5.28903 5.30397 5.54100 5.60526 5.78480 5.87927 6.11241 6.14582 6.28210 6.35129 6.40140 6.67331 6.77970 6.93808 7.06916 7.13823 7.27442 7.57016 7.64518 7.92038 8.10062 8.21600 8.34193 8.82849 8.96693 9.55290 11.04849 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.002631 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.432613 B =10639.898680 C =12612.604427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.737 5.737 3 C 0.561 3.439 4 O -0.525 6.525 5 C -0.153 4.153 6 C -0.074 4.074 7 C -0.195 4.195 8 C 0.116 3.884 9 O -0.314 6.314 10 C 0.028 3.972 11 C 0.148 3.852 12 N -0.681 5.681 13 C 0.695 3.305 14 O -0.574 6.574 15 N -0.729 5.729 16 C 0.138 3.862 17 C 0.013 3.987 18 C -0.521 4.521 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.039 4.039 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.399 0.601 31 H 0.126 0.874 32 H 0.137 0.863 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.411 0.589 37 H 0.396 0.604 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.022 0.978 41 H 0.023 0.977 42 H 0.262 0.738 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 -30.335 -3.918 30.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.390 5.390 3 C 0.348 3.652 4 O -0.402 6.402 5 C -0.157 4.157 6 C -0.094 4.094 7 C -0.214 4.214 8 C 0.067 3.933 9 O -0.227 6.227 10 C -0.066 4.066 11 C 0.051 3.949 12 N -0.329 5.329 13 C 0.395 3.605 14 O -0.452 6.452 15 N -0.382 5.382 16 C 0.016 3.984 17 C -0.024 4.024 18 C -0.560 4.560 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 C -0.060 4.060 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.234 0.766 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.246 0.754 37 H 0.229 0.771 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.751 -29.176 -3.468 29.620 hybrid contribution 0.859 0.099 0.002 0.865 sum -2.892 -29.077 -3.466 29.425 Atomic orbital electron populations 1.21533 0.79344 1.02051 1.02618 1.45678 1.07749 1.08509 1.77051 1.18189 0.87209 0.83664 0.76100 1.90838 1.69816 1.31009 1.48505 1.19633 0.92692 0.93731 1.09636 1.20911 0.93527 0.96768 0.98231 1.20869 0.94831 0.96413 1.09326 1.18895 0.82637 0.92743 0.99027 1.86006 1.16022 1.32135 1.88568 1.23094 0.98174 0.83941 1.01436 1.16746 0.90525 0.82756 1.04839 1.42554 1.18917 1.06155 1.65243 1.16082 0.84490 0.80435 0.79451 1.90905 1.20434 1.85070 1.48762 1.45570 1.23197 1.06509 1.62966 1.21691 0.97274 0.81682 0.97799 1.19327 0.94685 0.90630 0.97789 1.21013 1.04602 0.91879 1.38489 0.92204 1.24994 0.94892 0.99220 0.95180 1.69949 1.14018 1.25875 1.43539 0.86558 0.79216 0.82095 0.79595 1.20105 1.21281 1.20068 1.21550 0.91276 0.99938 0.93272 0.92111 0.90730 0.92063 0.76641 0.85585 0.84570 0.88025 0.92444 0.92477 0.75358 0.77096 0.92358 0.92471 0.95921 0.95884 0.92815 0.81053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.70 59.85 0.64 1.30 16 2 N -0.74 -6.46 5.66 -68.12 -0.39 -6.84 16 3 C 0.56 7.58 7.76 -12.44 -0.10 7.49 16 4 O -0.53 -9.59 16.34 5.29 0.09 -9.51 16 5 C -0.15 -1.95 5.87 -104.97 -0.62 -2.56 16 6 C -0.07 -0.65 9.53 -39.19 -0.37 -1.02 16 7 C -0.20 -1.66 9.01 -39.53 -0.36 -2.02 16 8 C 0.12 1.28 6.71 -38.89 -0.26 1.02 16 9 O -0.31 -3.04 9.89 -19.07 -0.19 -3.23 16 10 C 0.03 0.15 9.81 101.05 0.99 1.14 16 11 C 0.15 2.09 6.44 -83.54 -0.54 1.56 16 12 N -0.68 -9.79 5.30 -14.14 -0.07 -9.87 16 13 C 0.70 12.66 8.37 -86.91 -0.73 11.93 16 14 O -0.57 -12.58 13.51 5.28 0.07 -12.51 16 15 N -0.73 -13.13 5.56 -65.23 -0.36 -13.49 16 16 C 0.14 3.01 5.61 -4.05 -0.02 2.98 16 17 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 19 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 22 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C -0.04 -0.61 8.26 -39.02 -0.32 -0.93 16 27 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.40 2.09 6.85 -40.82 -0.28 1.81 16 31 H 0.13 0.61 6.39 -52.49 -0.34 0.28 16 32 H 0.14 0.72 6.27 -52.49 -0.33 0.39 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 35 H 0.06 0.23 7.64 -51.93 -0.40 -0.17 16 36 H 0.41 4.75 8.35 -40.82 -0.34 4.41 16 37 H 0.40 6.05 8.49 -40.82 -0.35 5.71 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.17 3.32 5.36 -52.49 -0.28 3.04 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -36.80 366.34 -7.48 -44.29 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.63 Total: 6.89 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -2.24 Total: 7.69 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.09 Total: -55.81 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.03 Total: -25.24 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.80 -7.48 -44.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273301266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.251 kcal (2) G-P(sol) polarization free energy of solvation -36.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds