Wall clock time and date at job start Tue Mar 31 2020 13:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 119.99923 * 2 1 4 4 O 1.21583 * 120.00217 * 359.97438 * 3 2 1 5 5 C 1.47613 * 119.99987 * 179.97438 * 3 2 1 6 6 C 1.39717 * 120.06127 * 359.97179 * 5 3 2 7 7 C 1.37800 * 120.03033 * 180.02562 * 6 5 3 8 8 C 1.38816 * 120.16600 * 359.97438 * 7 6 5 9 9 O 1.35785 * 119.93311 * 180.27852 * 8 7 6 10 10 C 1.42904 * 117.00250 * 359.72844 * 9 8 7 11 11 C 1.39527 * 120.12701 * 0.02562 * 8 7 6 12 12 N 1.40186 * 120.01359 * 180.02562 * 11 8 7 13 13 C 1.34779 * 119.99842 * 204.78008 * 12 11 8 14 14 O 1.21592 * 119.99839 * 5.62732 * 13 12 11 15 15 N 1.34780 * 120.00302 * 185.63498 * 13 12 11 16 16 C 1.46493 * 120.00124 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 13 18 18 C 1.50695 * 109.47225 * 179.97438 * 17 16 15 19 19 H 1.08007 * 120.00471 * 0.02562 * 18 17 16 20 20 C 1.37885 * 120.00105 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99520 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46855 * 60.00510 * 22 20 18 24 24 H 1.48499 * 109.47056 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47259 * 300.00101 * 22 20 18 26 26 C 1.38286 * 119.96500 * 359.97438 * 11 8 7 27 27 H 1.09010 * 109.46880 * 60.00490 * 1 2 3 28 28 H 1.08996 * 109.47085 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47375 * 300.00680 * 1 2 3 30 30 H 0.97000 * 119.99733 * 179.97438 * 2 1 3 31 31 H 1.07995 * 119.98659 * 0.02852 * 6 5 3 32 32 H 1.08000 * 119.91545 * 180.02562 * 7 6 5 33 33 H 1.09005 * 109.47166 * 179.97438 * 10 9 8 34 34 H 1.09002 * 109.46972 * 299.99464 * 10 9 8 35 35 H 1.08996 * 109.47399 * 59.99649 * 10 9 8 36 36 H 0.96996 * 120.00884 * 24.77569 * 12 11 8 37 37 H 0.96998 * 119.99356 * 359.97438 * 15 13 12 38 38 H 1.09007 * 109.47034 * 299.99578 * 16 15 13 39 39 H 1.08995 * 109.47690 * 59.99540 * 16 15 13 40 40 H 1.09007 * 109.46907 * 299.99814 * 17 16 15 41 41 H 1.08996 * 109.47254 * 59.99810 * 17 16 15 42 42 H 0.97005 * 119.99637 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.07761 * 179.97438 * 26 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 -0.0005 5 6 3.6150 1.1672 0.0006 6 6 4.3149 -0.0420 0.0017 7 6 5.6929 -0.0413 0.0028 8 6 6.3898 1.1593 0.0022 9 8 7.7476 1.1545 -0.0025 10 6 8.3920 -0.1210 -0.0006 11 6 5.6977 2.3708 0.0011 12 7 6.4039 3.5818 -0.0001 13 6 5.8278 4.6982 0.4881 14 8 4.7373 4.6359 1.0222 15 7 6.4605 5.8837 0.3842 16 6 5.8346 7.0971 0.9153 17 6 6.7548 8.2947 0.6704 18 6 6.1106 9.5429 1.2162 19 1 5.1420 9.4877 1.6908 20 6 6.7583 10.7556 1.1107 21 7 7.9380 10.8229 0.5333 22 14 5.9596 12.3030 1.7866 23 1 5.7298 12.1448 3.2452 24 1 6.8532 13.4652 1.5501 25 1 4.6611 12.5291 1.1026 26 6 4.3148 2.3762 0.0000 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9500 -0.8401 0.0004 31 1 3.7757 -0.9778 0.0017 32 1 6.2320 -0.9771 0.0032 33 1 9.4731 0.0180 -0.0052 34 1 8.1003 -0.6741 0.8923 35 1 8.0941 -0.6799 -0.8876 36 1 7.3070 3.6164 -0.3521 37 1 7.3306 5.9333 -0.0417 38 1 4.8807 7.2629 0.4145 39 1 5.6674 6.9809 1.9861 40 1 7.7085 8.1286 1.1715 41 1 6.9223 8.4112 -0.4003 42 1 8.3939 11.6760 0.4594 43 1 3.7773 3.3129 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273301266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:13 Heat of formation + Delta-G solvation = -102.426214 kcal Electronic energy + Delta-G solvation = -26143.803691 eV Core-core repulsion = 22188.446042 eV Total energy + Delta-G solvation = -3955.357649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.08743 -40.91440 -40.38635 -38.16606 -36.76457 -35.94429 -35.61386 -34.85489 -31.96298 -31.56033 -30.41623 -28.65538 -27.32984 -26.70464 -24.26546 -24.07675 -22.84568 -22.00333 -21.55729 -19.94724 -19.36391 -18.76163 -18.44301 -17.70752 -17.36208 -16.89201 -16.60295 -16.51290 -16.39665 -16.22948 -15.96618 -15.38523 -15.23080 -15.13935 -14.84510 -14.42881 -14.27114 -14.10076 -13.79327 -13.59127 -13.24433 -13.15847 -12.98655 -12.93686 -12.54413 -12.28724 -12.22377 -12.00301 -11.72068 -11.65481 -11.48032 -11.15323 -11.10325 -10.60916 -10.22135 -10.14289 -9.66393 -8.85850 -8.24813 -6.35069 -0.19195 0.23061 1.40476 1.43848 1.48395 1.53734 1.69699 2.06401 2.17522 2.25171 2.40663 2.82434 3.09870 3.16675 3.74997 3.77385 3.91106 4.16973 4.28489 4.39938 4.47100 4.48002 4.48853 4.50417 4.62280 4.73845 4.82729 4.83670 4.87074 4.97246 5.10139 5.19579 5.29094 5.34650 5.39155 5.46851 5.57092 5.65702 5.76512 5.90361 6.15437 6.32219 6.53386 6.77148 6.93345 7.21902 7.33817 7.41225 8.86962 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.002631 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.432613 B =10639.898680 C =12612.604427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.713 5.713 3 C 0.553 3.447 4 O -0.590 6.590 5 C -0.172 4.172 6 C -0.046 4.046 7 C -0.183 4.183 8 C 0.129 3.871 9 O -0.329 6.329 10 C 0.015 3.985 11 C 0.112 3.888 12 N -0.665 5.665 13 C 0.695 3.305 14 O -0.615 6.615 15 N -0.724 5.724 16 C 0.159 3.841 17 C 0.025 3.975 18 C -0.549 4.549 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.925 5.925 22 Si 0.965 3.035 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.270 1.270 26 C -0.068 4.068 27 H 0.048 0.952 28 H 0.122 0.878 29 H 0.045 0.955 30 H 0.420 0.580 31 H 0.177 0.823 32 H 0.184 0.816 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.424 0.576 37 H 0.410 0.590 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.011 0.989 41 H 0.010 0.990 42 H 0.266 0.734 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 -34.207 -3.942 34.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C 0.341 3.659 4 O -0.472 6.472 5 C -0.176 4.176 6 C -0.066 4.066 7 C -0.201 4.201 8 C 0.080 3.920 9 O -0.242 6.242 10 C -0.079 4.079 11 C 0.017 3.983 12 N -0.314 5.314 13 C 0.395 3.605 14 O -0.495 6.495 15 N -0.378 5.378 16 C 0.035 3.965 17 C -0.012 4.012 18 C -0.587 4.587 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.565 5.565 22 Si 0.790 3.210 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.195 1.195 26 C -0.090 4.090 27 H 0.067 0.933 28 H 0.140 0.860 29 H 0.064 0.936 30 H 0.259 0.741 31 H 0.194 0.806 32 H 0.201 0.799 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.262 0.738 37 H 0.246 0.754 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.861 -33.169 -3.520 33.477 hybrid contribution 0.663 1.080 -0.026 1.267 sum -2.198 -32.089 -3.546 32.359 Atomic orbital electron populations 1.21722 0.78337 1.04677 1.01320 1.45528 1.08431 1.07929 1.74706 1.18518 0.87811 0.84024 0.75511 1.90803 1.70995 1.33525 1.51865 1.19668 0.92374 0.94373 1.11226 1.21395 0.93891 0.96755 0.94517 1.21404 0.94740 0.97066 1.06931 1.18948 0.83611 0.92187 0.97247 1.86006 1.15105 1.35090 1.88009 1.23492 0.98767 0.82446 1.03151 1.16910 0.90285 0.83507 1.07636 1.42238 1.19253 1.05429 1.64464 1.16156 0.83933 0.81114 0.79267 1.90899 1.22286 1.85792 1.50572 1.45212 1.23706 1.05666 1.63228 1.21154 0.96082 0.82180 0.97062 1.19120 0.94467 0.91171 0.96461 1.21425 1.04904 0.93409 1.38964 0.92405 1.25863 0.95415 1.02498 0.95309 1.70050 1.15193 1.26905 1.44334 0.85497 0.78402 0.78045 0.79104 1.19348 1.20367 1.19470 1.21215 0.92240 0.99432 0.96137 0.93339 0.85988 0.93616 0.74136 0.80607 0.79867 0.86582 0.90902 0.90359 0.73811 0.75448 0.93774 0.93555 0.97023 0.97178 0.92480 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.70 127.77 1.37 2.49 16 2 N -0.71 -11.21 5.66 -487.69 -2.76 -13.97 16 3 C 0.55 15.33 7.76 86.72 0.67 16.01 16 4 O -0.59 -23.50 16.34 -3.98 -0.06 -23.56 16 5 C -0.17 -4.37 5.87 -20.09 -0.12 -4.49 16 6 C -0.05 -0.63 9.53 22.52 0.21 -0.41 16 7 C -0.18 -2.26 9.01 22.30 0.20 -2.06 16 8 C 0.13 2.56 6.71 22.72 0.15 2.71 16 9 O -0.33 -5.42 9.89 -91.14 -0.90 -6.32 16 10 C 0.02 0.09 9.81 113.37 1.11 1.21 16 11 C 0.11 3.24 6.44 38.13 0.25 3.48 16 12 N -0.67 -19.93 5.30 -316.91 -1.68 -21.60 16 13 C 0.69 26.97 8.37 179.05 1.50 28.47 16 14 O -0.62 -29.28 13.51 -4.01 -0.05 -29.34 16 15 N -0.72 -27.46 5.56 -478.53 -2.66 -30.12 16 16 C 0.16 7.34 5.61 86.38 0.48 7.82 16 17 C 0.03 1.32 5.09 29.85 0.15 1.48 16 18 C -0.55 -31.65 9.11 25.60 0.23 -31.42 16 19 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 20 C 0.01 0.46 5.46 84.66 0.46 0.92 16 21 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 22 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 C -0.07 -2.29 8.26 22.63 0.19 -2.10 16 27 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.42 2.67 6.85 -92.71 -0.63 2.03 16 31 H 0.18 0.57 6.39 -2.91 -0.02 0.55 16 32 H 0.18 0.60 6.27 -2.91 -0.02 0.58 16 33 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.07 0.26 7.66 -2.39 -0.02 0.25 16 35 H 0.08 0.19 7.64 -2.39 -0.02 0.17 16 36 H 0.42 9.93 8.35 -92.71 -0.77 9.16 16 37 H 0.41 13.03 8.49 -92.71 -0.79 12.24 16 38 H 0.04 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 43 H 0.12 5.33 5.36 -2.91 -0.02 5.31 16 Total: -1.00 -87.89 366.34 -0.06 -87.94 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -1.11 Total: 20.91 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 6.87 Total: 24.10 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -6.82 Total: -120.58 kcal Atomic # 8 Polarization: -58.20 SS G_CDS: -1.02 Total: -59.22 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -87.89 -0.06 -87.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273301266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.483 kcal (2) G-P(sol) polarization free energy of solvation -87.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds