Wall clock time and date at job start Tue Mar 31 2020 13:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21276 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 N 1.40102 * 119.99893 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99522 * 179.97438 * 13 12 10 15 15 O 1.21595 * 119.99546 * 180.02562 * 14 13 12 16 16 N 1.34777 * 120.00381 * 0.02562 * 14 13 12 17 17 C 1.46501 * 119.99750 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46838 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47145 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99989 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00084 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99849 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00085 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46967 * 60.00226 * 23 21 19 25 25 H 1.48496 * 109.47045 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47142 * 299.99992 * 23 21 19 27 27 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 28 28 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 29 29 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 31 31 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 32 32 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 35 35 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 36 36 H 0.96996 * 119.99860 * 359.97438 * 12 10 9 37 37 H 0.97001 * 119.99835 * 0.02562 * 13 12 10 38 38 H 0.96997 * 120.00020 * 359.97438 * 16 14 13 39 39 H 1.08999 * 109.47062 * 299.99234 * 17 16 14 40 40 H 1.09002 * 109.47375 * 59.99888 * 17 16 14 41 41 H 1.09003 * 109.47159 * 299.99791 * 18 17 16 42 42 H 1.08994 * 109.47456 * 59.99800 * 18 17 16 43 43 H 0.97001 * 119.99615 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9256 0.1486 -2.3338 12 7 5.1295 -1.5889 -1.6603 13 7 5.2871 -2.0441 -2.9759 14 6 5.9933 -3.1656 -3.2208 15 8 6.1305 -3.5604 -4.3626 16 7 6.5473 -3.8495 -2.2001 17 6 7.3154 -5.0683 -2.4665 18 6 7.8314 -5.6446 -1.1465 19 6 8.6210 -6.8986 -1.4203 20 1 8.7422 -7.2497 -2.4344 21 6 9.1886 -7.5977 -0.3763 22 7 9.0406 -7.1704 0.8587 23 14 10.1667 -9.1526 -0.7157 24 1 11.3162 -8.8313 -1.5992 25 1 10.6676 -9.7118 0.5655 26 1 9.2932 -10.1510 -1.3831 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2128 2.3203 -0.0010 31 1 1.3339 4.5114 0.0026 32 1 3.7920 4.6381 -0.0024 33 1 5.1344 2.5754 -0.0023 34 1 5.2326 0.2265 0.4336 35 1 3.7469 -0.7414 0.5899 36 1 5.5282 -2.0811 -0.9257 37 1 4.8886 -1.5517 -3.7105 38 1 6.4382 -3.5344 -1.2893 39 1 6.6752 -5.8011 -2.9576 40 1 8.1597 -4.8315 -3.1139 41 1 8.4718 -4.9116 -0.6556 42 1 6.9874 -5.8813 -0.4987 43 1 9.4396 -7.6625 1.5932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273498173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:23 Heat of formation + Delta-G solvation = -46.523101 kcal Electronic energy + Delta-G solvation = -25885.319154 eV Core-core repulsion = 21932.385646 eV Total energy + Delta-G solvation = -3952.933508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83363 -40.14626 -39.00830 -37.63996 -35.61796 -34.99060 -33.35514 -32.83225 -31.09030 -30.40722 -29.44151 -28.05093 -27.20139 -24.83325 -22.59789 -22.40795 -21.69635 -20.88879 -20.61270 -18.91849 -18.24850 -17.77212 -16.68355 -16.40634 -16.22126 -16.00203 -15.80522 -15.66879 -14.96799 -14.92623 -14.72390 -14.54031 -14.20211 -13.98287 -13.63807 -13.44699 -13.35517 -12.79591 -12.49664 -12.33695 -12.31625 -11.68709 -11.42407 -11.32294 -11.25864 -11.17569 -11.02897 -10.69543 -10.46274 -10.39047 -10.09298 -9.64269 -9.34137 -9.16537 -8.75825 -8.45928 -8.43535 -8.17894 -6.13033 -4.15738 0.96723 1.17314 1.91860 2.37820 2.97726 3.29703 3.30234 3.33676 3.38075 3.38855 3.49716 4.28381 4.37975 4.44284 4.47148 4.63724 4.78001 4.84378 4.91897 4.99768 5.08324 5.16538 5.19048 5.23413 5.24391 5.41340 5.68627 6.00335 6.10317 6.10689 6.23512 6.31226 6.41443 6.48411 6.68015 6.77019 6.84340 7.07753 7.31811 7.47465 7.55941 7.78289 7.85390 8.21106 8.37161 8.72237 8.89878 9.49280 10.98557 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019216 B = 0.002150 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.732075 B =13017.801909 C =13410.023853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.146 3.854 4 C -0.210 4.210 5 C -0.079 4.079 6 C -0.158 4.158 7 C -0.067 4.067 8 C -0.100 4.100 9 C -0.085 4.085 10 C 0.519 3.481 11 O -0.530 6.530 12 N -0.529 5.529 13 N -0.539 5.539 14 C 0.707 3.293 15 O -0.578 6.578 16 N -0.735 5.735 17 C 0.137 3.863 18 C 0.013 3.987 19 C -0.522 4.522 20 H 0.060 0.940 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.275 1.275 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.422 0.578 37 H 0.437 0.563 38 H 0.388 0.612 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.919 21.514 4.219 27.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.100 3.900 4 C -0.229 4.229 5 C -0.097 4.097 6 C -0.176 4.176 7 C -0.085 4.085 8 C -0.101 4.101 9 C -0.126 4.126 10 C 0.306 3.694 11 O -0.404 6.404 12 N -0.280 5.280 13 N -0.297 5.297 14 C 0.406 3.594 15 O -0.453 6.453 16 N -0.390 5.390 17 C 0.014 3.986 18 C -0.024 4.024 19 C -0.561 4.561 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.533 5.533 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.201 1.201 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.263 0.737 37 H 0.282 0.718 38 H 0.222 0.778 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.938 21.247 2.973 26.726 hybrid contribution 0.213 -0.582 0.453 0.768 sum -15.725 20.665 3.426 26.193 Atomic orbital electron populations 1.23067 0.78239 1.04137 1.01248 1.86069 1.21478 1.26745 1.88308 1.18782 0.91638 0.84377 0.95190 1.21190 0.99986 0.92352 1.09331 1.20941 0.94746 0.96908 0.97100 1.21010 0.93903 0.98352 1.04354 1.20882 0.99974 0.90967 0.96651 1.18526 0.90134 0.94345 1.07112 1.20390 1.02115 0.96816 0.93252 1.20766 0.77658 0.78980 0.92040 1.90735 1.47697 1.56007 1.45992 1.44970 1.56380 1.27423 0.99272 1.44668 1.59455 1.27596 0.97967 1.15884 0.78726 0.79070 0.85695 1.91000 1.65698 1.68231 1.20334 1.45586 1.56639 1.29237 1.07582 1.21708 0.93493 0.82274 1.01103 1.19331 0.96488 0.96150 0.90475 1.20993 1.32896 1.08632 0.93558 0.92202 1.24989 0.96314 0.97930 0.95014 1.69938 1.44889 1.39828 0.98664 0.86556 0.80380 0.83051 0.77462 1.20085 1.21256 1.20095 0.92643 0.92624 0.88114 0.85496 0.85875 0.85799 0.85245 0.87178 0.86872 0.73665 0.71752 0.77819 0.92354 0.92352 0.95894 0.95896 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.19 9.63 -19.42 -0.19 -3.38 16 3 C 0.15 1.51 6.66 -39.22 -0.26 1.25 16 4 C -0.21 -1.85 9.04 -39.43 -0.36 -2.20 16 5 C -0.08 -0.63 10.04 -39.60 -0.40 -1.03 16 6 C -0.16 -1.28 10.04 -39.56 -0.40 -1.68 16 7 C -0.07 -0.59 9.68 -39.61 -0.38 -0.97 16 8 C -0.10 -0.99 4.39 -104.48 -0.46 -1.45 16 9 C -0.08 -0.71 5.55 -29.04 -0.16 -0.87 16 10 C 0.52 6.05 7.94 -10.98 -0.09 5.96 16 11 O -0.53 -8.13 15.87 5.56 0.09 -8.05 16 12 N -0.53 -5.96 6.26 31.22 0.20 -5.76 16 13 N -0.54 -7.74 6.26 27.63 0.17 -7.57 16 14 C 0.71 12.39 8.68 -86.92 -0.75 11.63 16 15 O -0.58 -12.39 17.18 5.28 0.09 -12.30 16 16 N -0.73 -12.40 5.52 -65.22 -0.36 -12.76 16 17 C 0.14 2.82 5.61 -4.04 -0.02 2.80 16 18 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 19 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 23 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 28 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.13 0.85 6.30 -52.49 -0.33 0.52 16 31 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.11 0.60 8.05 -51.93 -0.42 0.19 16 35 H 0.11 0.82 7.69 -51.93 -0.40 0.42 16 36 H 0.42 3.74 6.70 -182.60 -1.22 2.52 16 37 H 0.44 6.38 8.10 -182.59 -1.48 4.90 16 38 H 0.39 5.40 6.39 -40.82 -0.26 5.14 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -35.33 371.46 -9.36 -44.69 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.83 Total: 6.34 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.84 Total: 1.90 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.74 Total: -50.79 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.01 Total: -23.73 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.33 -9.36 -44.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273498173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.836 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds