Wall clock time and date at job start Tue Mar 31 2020 13:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21276 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 N 1.40102 * 119.99893 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99522 * 179.97438 * 13 12 10 15 15 O 1.21595 * 119.99546 * 180.02562 * 14 13 12 16 16 N 1.34777 * 120.00381 * 0.02562 * 14 13 12 17 17 C 1.46501 * 119.99750 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46838 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47145 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99989 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00084 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99849 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00085 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46967 * 60.00226 * 23 21 19 25 25 H 1.48496 * 109.47045 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47142 * 299.99992 * 23 21 19 27 27 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 28 28 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 29 29 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 31 31 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 32 32 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 35 35 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 36 36 H 0.96996 * 119.99860 * 359.97438 * 12 10 9 37 37 H 0.97001 * 119.99835 * 0.02562 * 13 12 10 38 38 H 0.96997 * 120.00020 * 359.97438 * 16 14 13 39 39 H 1.08999 * 109.47062 * 299.99234 * 17 16 14 40 40 H 1.09002 * 109.47375 * 59.99888 * 17 16 14 41 41 H 1.09003 * 109.47159 * 299.99791 * 18 17 16 42 42 H 1.08994 * 109.47456 * 59.99800 * 18 17 16 43 43 H 0.97001 * 119.99615 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9256 0.1486 -2.3338 12 7 5.1295 -1.5889 -1.6603 13 7 5.2871 -2.0441 -2.9759 14 6 5.9933 -3.1656 -3.2208 15 8 6.1305 -3.5604 -4.3626 16 7 6.5473 -3.8495 -2.2001 17 6 7.3154 -5.0683 -2.4665 18 6 7.8314 -5.6446 -1.1465 19 6 8.6210 -6.8986 -1.4203 20 1 8.7422 -7.2497 -2.4344 21 6 9.1886 -7.5977 -0.3763 22 7 9.0406 -7.1704 0.8587 23 14 10.1667 -9.1526 -0.7157 24 1 11.3162 -8.8313 -1.5992 25 1 10.6676 -9.7118 0.5655 26 1 9.2932 -10.1510 -1.3831 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2128 2.3203 -0.0010 31 1 1.3339 4.5114 0.0026 32 1 3.7920 4.6381 -0.0024 33 1 5.1344 2.5754 -0.0023 34 1 5.2326 0.2265 0.4336 35 1 3.7469 -0.7414 0.5899 36 1 5.5282 -2.0811 -0.9257 37 1 4.8886 -1.5517 -3.7105 38 1 6.4382 -3.5344 -1.2893 39 1 6.6752 -5.8011 -2.9576 40 1 8.1597 -4.8315 -3.1139 41 1 8.4718 -4.9116 -0.6556 42 1 6.9874 -5.8813 -0.4987 43 1 9.4396 -7.6625 1.5932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273498173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:22 Heat of formation + Delta-G solvation = -71.827189 kcal Electronic energy + Delta-G solvation = -25886.416422 eV Core-core repulsion = 21932.385646 eV Total energy + Delta-G solvation = -3954.030776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74813 -41.16148 -40.13147 -38.27199 -36.82074 -36.68185 -34.75611 -34.07994 -32.25120 -31.18969 -30.99696 -28.71132 -27.83715 -26.72818 -23.38572 -23.35664 -23.02980 -22.12632 -21.78202 -20.18532 -18.93370 -18.80226 -18.42115 -17.36834 -17.24793 -16.95161 -16.71762 -16.54972 -16.45248 -16.23179 -16.04882 -15.44046 -15.29141 -15.06430 -14.97430 -14.58535 -14.26169 -14.06398 -13.40891 -13.20531 -13.18784 -12.93590 -12.85777 -12.53197 -12.52243 -12.24346 -12.19562 -11.98945 -11.93375 -11.74388 -11.56357 -11.35896 -11.19914 -10.57747 -10.22758 -9.80049 -9.38514 -9.07882 -8.21331 -6.30501 0.30068 0.53313 0.86673 1.42067 1.45014 1.46376 1.54177 1.98667 2.00069 2.40381 2.44904 2.82088 3.14063 3.51551 3.66860 3.89798 4.03434 4.13084 4.27357 4.37399 4.37669 4.44367 4.46424 4.53499 4.58421 4.66307 4.72010 4.84172 4.88321 5.08704 5.18982 5.31440 5.40014 5.44740 5.50481 5.60871 5.62560 5.62718 5.82397 5.89728 6.18820 6.26476 6.46599 6.63935 6.82218 7.19651 7.36414 7.38967 8.90099 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019216 B = 0.002150 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.732075 B =13017.801909 C =13410.023853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.123 3.877 4 C -0.221 4.221 5 C -0.085 4.085 6 C -0.166 4.166 7 C -0.077 4.077 8 C -0.123 4.123 9 C -0.078 4.078 10 C 0.522 3.478 11 O -0.568 6.568 12 N -0.519 5.519 13 N -0.532 5.532 14 C 0.711 3.289 15 O -0.619 6.619 16 N -0.725 5.725 17 C 0.156 3.844 18 C 0.024 3.976 19 C -0.546 4.546 20 H 0.059 0.941 21 C 0.009 3.991 22 N -0.924 5.924 23 Si 0.961 3.039 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.270 1.270 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.112 0.888 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.434 0.566 37 H 0.438 0.562 38 H 0.404 0.596 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.014 0.986 42 H 0.013 0.987 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.953 22.158 5.032 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.078 3.922 4 C -0.240 4.240 5 C -0.103 4.103 6 C -0.184 4.184 7 C -0.095 4.095 8 C -0.124 4.124 9 C -0.119 4.119 10 C 0.311 3.689 11 O -0.444 6.444 12 N -0.273 5.273 13 N -0.286 5.286 14 C 0.410 3.590 15 O -0.497 6.497 16 N -0.381 5.381 17 C 0.032 3.968 18 C -0.014 4.014 19 C -0.585 4.585 20 H 0.077 0.923 21 C -0.190 4.190 22 N -0.563 5.563 23 Si 0.786 3.214 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.195 1.195 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.130 0.870 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.278 0.722 37 H 0.284 0.716 38 H 0.241 0.759 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.990 21.920 3.831 27.401 hybrid contribution 0.140 -0.676 0.228 0.727 sum -15.850 21.244 4.059 26.814 Atomic orbital electron populations 1.23270 0.76861 1.05181 1.02039 1.86021 1.23088 1.27119 1.88520 1.19096 0.92255 0.84863 0.96009 1.21475 1.00923 0.92365 1.09202 1.21301 0.95156 0.97543 0.96267 1.21359 0.94205 0.99147 1.03715 1.21199 1.01045 0.90919 0.96356 1.18816 0.90422 0.95234 1.07906 1.20488 1.03897 0.96623 0.90862 1.21458 0.76350 0.78127 0.92999 1.90721 1.49166 1.57105 1.47440 1.45091 1.56570 1.27624 0.98008 1.44382 1.58126 1.26442 0.99680 1.15802 0.78752 0.79510 0.84940 1.90971 1.67194 1.69594 1.21934 1.45198 1.56203 1.28250 1.08473 1.21231 0.93292 0.83249 0.99035 1.19140 0.95586 0.95130 0.91543 1.21424 1.33433 1.09938 0.93679 0.92312 1.25802 0.97305 1.01008 0.94847 1.70031 1.45761 1.41134 0.99402 0.85556 0.79027 0.79312 0.77498 1.19476 1.20707 1.19526 0.91109 0.92546 0.87018 0.84029 0.83589 0.83792 0.83600 0.83916 0.85658 0.72195 0.71646 0.75936 0.93279 0.93199 0.96794 0.96889 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -6.66 9.63 -92.39 -0.89 -7.55 16 3 C 0.12 2.47 6.66 22.51 0.15 2.62 16 4 C -0.22 -3.68 9.04 22.37 0.20 -3.48 16 5 C -0.08 -1.22 10.04 22.26 0.22 -1.00 16 6 C -0.17 -2.42 10.04 22.28 0.22 -2.20 16 7 C -0.08 -1.25 9.68 22.25 0.22 -1.03 16 8 C -0.12 -2.30 4.39 -19.77 -0.09 -2.39 16 9 C -0.08 -1.18 5.55 29.10 0.16 -1.02 16 10 C 0.52 11.56 7.94 87.65 0.70 12.26 16 11 O -0.57 -17.20 15.87 -3.02 -0.05 -17.25 16 12 N -0.52 -11.00 6.26 -173.53 -1.09 -12.08 16 13 N -0.53 -14.87 6.26 -184.74 -1.16 -16.03 16 14 C 0.71 24.56 8.68 179.06 1.55 26.11 16 15 O -0.62 -26.63 17.18 -4.02 -0.07 -26.70 16 16 N -0.72 -23.91 5.52 -478.53 -2.64 -26.55 16 17 C 0.16 6.40 5.61 86.38 0.48 6.89 16 18 C 0.02 1.12 5.09 29.85 0.15 1.27 16 19 C -0.55 -29.45 9.11 25.60 0.23 -29.22 16 20 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 21 C 0.01 0.51 5.46 84.65 0.46 0.98 16 22 N -0.92 -52.25 13.29 21.45 0.28 -51.97 16 23 Si 0.96 42.60 29.54 68.60 2.03 44.62 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 25 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H 0.07 0.63 7.66 -2.39 -0.02 0.62 16 28 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 29 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.14 1.75 6.30 -2.91 -0.02 1.73 16 31 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 32 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.14 1.17 8.05 -2.38 -0.02 1.15 16 35 H 0.13 1.60 7.69 -2.38 -0.02 1.58 16 36 H 0.43 6.88 6.70 -213.32 -1.43 5.45 16 37 H 0.44 12.66 8.10 -213.32 -1.73 10.93 16 38 H 0.40 10.70 6.39 -92.71 -0.59 10.11 16 39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -75.58 371.46 -0.48 -76.06 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: -2.68 Total: 26.27 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 5.78 Total: 11.17 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -4.60 Total: -106.63 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -1.01 Total: -51.50 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -75.58 -0.48 -76.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273498173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.237 kcal (2) G-P(sol) polarization free energy of solvation -75.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds