Wall clock time and date at job start Tue Mar 31 2020 12:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46491 * 109.47068 * 2 1 4 4 C 1.46502 * 120.00255 * 269.99967 * 3 2 1 5 5 C 1.50693 * 109.47471 * 270.00530 * 4 3 2 6 6 H 1.08004 * 120.00441 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00330 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00227 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00025 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47152 * 90.00152 * 9 7 5 11 11 H 1.48496 * 109.47480 * 210.00586 * 9 7 5 12 12 H 1.48504 * 109.46750 * 330.00014 * 9 7 5 13 13 C 1.34779 * 119.99941 * 90.00430 * 3 2 1 14 14 O 1.21589 * 119.99726 * 179.97438 * 13 3 2 15 15 N 1.34774 * 119.99871 * 359.97438 * 13 3 2 16 16 C 1.39950 * 119.99920 * 175.67828 * 15 13 3 17 17 C 1.38891 * 120.06792 * 33.44820 * 16 15 13 18 18 C 1.38086 * 119.92651 * 180.02562 * 17 16 15 19 19 C 1.50707 * 119.96303 * 179.97438 * 18 17 16 20 20 C 1.38296 * 120.07387 * 359.95420 * 18 17 16 21 21 N 1.48025 * 119.93066 * 180.02562 * 20 18 17 22 22 O 1.21803 * 120.00065 * 172.37170 * 21 20 18 23 23 O 1.21801 * 120.00304 * 352.36693 * 21 20 18 24 24 C 1.38261 * 120.14002 * 0.02562 * 20 18 17 25 25 C 1.38134 * 120.06981 * 359.97438 * 24 20 18 26 26 C 1.50695 * 120.03729 * 179.72308 * 25 24 20 27 27 H 1.09001 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47093 * 299.99533 * 1 2 3 29 29 H 1.08998 * 109.47921 * 59.99834 * 1 2 3 30 30 H 1.09005 * 109.46238 * 240.00271 * 2 1 3 31 31 H 1.08998 * 109.47190 * 120.00302 * 2 1 3 32 32 H 1.09000 * 109.47005 * 30.00664 * 4 3 2 33 33 H 1.09001 * 109.47096 * 150.00354 * 4 3 2 34 34 H 0.97004 * 120.00111 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00280 * 355.68116 * 15 13 3 36 36 H 1.07997 * 120.03403 * 0.04506 * 17 16 15 37 37 H 1.08999 * 109.46986 * 262.52439 * 19 18 17 38 38 H 1.08999 * 109.47126 * 22.51414 * 19 18 17 39 39 H 1.09001 * 109.47216 * 142.52067 * 19 18 17 40 40 H 1.08001 * 119.96480 * 180.02562 * 24 20 18 41 41 H 1.09009 * 109.46802 * 89.99550 * 26 25 24 42 42 H 1.08999 * 109.47156 * 209.99746 * 26 25 24 43 43 H 1.09000 * 109.47096 * 330.00398 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6856 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0960 7 6 4.1489 2.3896 -2.8780 8 7 5.3908 2.1825 -3.2580 9 14 3.0123 3.4341 -3.9299 10 1 3.1147 4.8545 -3.5092 11 1 3.4055 3.3107 -5.3565 12 1 1.6128 2.9671 -3.7602 13 6 2.2430 2.0164 1.1672 14 8 2.6487 3.1626 1.1672 15 7 2.0179 1.3812 2.3344 16 6 2.3364 2.0076 3.5447 17 6 2.2115 3.3853 3.6692 18 6 2.5270 4.0004 4.8646 19 6 2.3923 5.4952 5.0004 20 6 2.9660 3.2461 5.9374 21 7 3.3028 3.9087 7.2175 22 8 3.5550 3.2380 8.2025 23 8 3.3277 5.1245 7.2859 24 6 3.0910 1.8744 5.8168 25 6 2.7770 1.2531 4.6237 26 6 2.9195 -0.2413 4.4911 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1410 -1.1383 34 1 5.7166 2.5724 -4.0843 35 1 1.6353 0.4899 2.3356 36 1 1.8677 3.9747 2.8321 37 1 3.3646 5.9631 4.8465 38 1 1.6888 5.8659 4.2549 39 1 2.0261 5.7379 5.9980 40 1 3.4337 1.2881 6.6565 41 1 1.9840 -0.7222 4.7773 42 1 3.1563 -0.4934 3.4575 43 1 3.7210 -0.5891 5.1428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276421104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:16 Heat of formation + Delta-G solvation = 1.154137 kcal Electronic energy + Delta-G solvation = -27383.175871 eV Core-core repulsion = 23432.309803 eV Total energy + Delta-G solvation = -3950.866068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.20556 -40.89332 -39.14232 -36.63877 -35.93043 -35.32737 -33.66761 -32.76488 -30.89437 -30.59776 -29.57904 -27.86452 -26.54333 -24.97692 -23.39026 -23.18219 -22.41673 -21.38999 -19.83805 -18.69338 -18.65919 -17.80602 -17.54479 -17.19118 -16.97441 -15.92551 -15.31419 -15.15773 -14.59609 -14.40957 -14.09570 -13.90420 -13.64129 -13.52410 -13.48054 -13.26213 -12.89256 -12.74080 -12.47314 -12.33687 -12.15139 -12.03043 -11.70183 -11.62873 -11.36578 -11.19897 -11.10148 -11.02880 -10.73226 -10.62670 -10.58278 -10.27658 -9.77182 -9.60945 -9.02094 -8.69974 -8.58882 -7.96976 -6.19458 -4.19729 -0.09631 0.87253 1.36325 1.49359 2.65141 3.06485 3.20569 3.26020 3.28982 3.52465 3.96755 4.23680 4.28996 4.32216 4.58086 4.70225 4.87197 4.97499 5.08965 5.13072 5.24903 5.25756 5.33137 5.36961 5.47678 5.56355 5.59936 5.64516 5.69959 5.83889 5.89888 5.92624 6.01802 6.13963 6.16595 6.33876 6.43068 6.67200 6.68560 6.97095 7.16930 7.46825 7.73503 8.10497 8.33486 8.76575 8.83958 9.39402 10.93741 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016278 B = 0.003386 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.724879 B = 8266.583039 C = 9092.253440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.103 3.897 3 N -0.596 5.596 4 C 0.231 3.769 5 C -0.534 4.534 6 H 0.074 0.926 7 C 0.074 3.926 8 N -0.894 5.894 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.699 3.301 14 O -0.560 6.560 15 N -0.688 5.688 16 C 0.242 3.758 17 C -0.129 4.129 18 C 0.002 3.998 19 C -0.128 4.128 20 C -0.077 4.077 21 N 0.041 4.959 22 O -0.183 6.183 23 O -0.167 6.167 24 C -0.030 4.030 25 C -0.132 4.132 26 C -0.113 4.113 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.409 0.591 36 H 0.168 0.832 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.152 0.848 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.942 -5.062 14.407 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 N -0.329 5.329 4 C 0.111 3.889 5 C -0.573 4.573 6 H 0.092 0.908 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.401 3.599 14 O -0.436 6.436 15 N -0.336 5.336 16 C 0.142 3.858 17 C -0.150 4.150 18 C 0.000 4.000 19 C -0.185 4.185 20 C -0.162 4.162 21 N 0.555 4.445 22 O -0.393 6.393 23 O -0.380 6.380 24 C -0.050 4.050 25 C -0.136 4.136 26 C -0.169 4.169 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.247 0.753 36 H 0.185 0.815 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.170 0.830 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.664 -4.536 13.474 17.772 hybrid contribution -0.377 0.100 -0.408 0.564 sum -11.041 -4.437 13.066 17.672 Atomic orbital electron populations 1.22277 0.96328 1.01970 1.02574 1.21475 0.93653 0.83734 1.03247 1.47307 1.66625 1.13484 1.05511 1.19663 0.97538 0.93222 0.78526 1.21296 0.95267 1.33403 1.07323 0.90774 1.24842 0.95006 0.95713 0.97302 1.69887 1.15132 1.44677 1.23521 0.86861 0.81316 0.81643 0.79900 1.19811 1.20966 1.19066 1.15890 0.79093 0.84893 0.80012 1.90908 1.51133 1.16290 1.85239 1.43148 1.66038 1.20925 1.03504 1.17732 0.91313 0.92049 0.84698 1.21413 1.02750 0.93697 0.97180 1.19730 0.92356 0.97623 0.90312 1.21254 1.03991 0.88758 1.04454 1.20799 1.16819 0.93343 0.85222 1.43525 0.97547 1.00883 1.02563 1.94503 1.52941 1.64880 1.27022 1.94463 1.55741 0.96248 1.91596 1.20548 0.95319 0.91255 0.97899 1.19541 1.03978 0.97375 0.92670 1.20744 1.03031 0.89501 1.03650 0.91582 0.93054 0.91725 0.88850 0.92064 0.94788 0.94298 0.92414 0.75294 0.81468 0.89218 0.90774 0.88789 0.82989 0.90566 0.90924 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 10.24 37.16 0.38 -1.40 16 2 C 0.10 1.34 5.85 -4.05 -0.02 1.32 16 3 N -0.60 -10.85 2.46 -180.81 -0.44 -11.30 16 4 C 0.23 5.18 4.23 -5.20 -0.02 5.16 16 5 C -0.53 -14.53 9.94 -34.44 -0.34 -14.88 16 6 H 0.07 2.23 8.06 -52.48 -0.42 1.81 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.89 -26.73 13.96 55.43 0.77 -25.95 16 9 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 13 C 0.70 12.81 8.13 -86.92 -0.71 12.10 16 14 O -0.56 -12.47 13.26 5.29 0.07 -12.40 16 15 N -0.69 -9.22 4.62 -14.22 -0.07 -9.29 16 16 C 0.24 3.23 6.31 -83.69 -0.53 2.70 16 17 C -0.13 -1.86 8.33 -39.40 -0.33 -2.18 16 18 C 0.00 0.03 5.88 -104.65 -0.62 -0.59 16 19 C -0.13 -1.51 8.63 36.01 0.31 -1.20 16 20 C -0.08 -1.02 6.83 -79.91 -0.55 -1.57 16 21 N 0.04 0.60 4.45 33.98 0.15 0.75 16 22 O -0.18 -2.70 18.46 -29.46 -0.54 -3.24 16 23 O -0.17 -2.47 15.39 -29.46 -0.45 -2.92 16 24 C -0.03 -0.35 9.21 -39.61 -0.36 -0.71 16 25 C -0.13 -1.45 5.90 -104.44 -0.62 -2.06 16 26 C -0.11 -0.88 9.47 36.00 0.34 -0.54 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 31 H 0.06 0.63 6.43 -51.93 -0.33 0.29 16 32 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.41 4.11 5.59 -40.82 -0.23 3.89 16 36 H 0.17 2.66 6.10 -52.49 -0.32 2.34 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.77 8.03 -51.93 -0.42 0.35 16 39 H 0.09 1.08 5.95 -51.93 -0.31 0.77 16 40 H 0.15 1.44 7.62 -52.49 -0.40 1.04 16 41 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.07 0.60 7.14 -51.93 -0.37 0.23 16 43 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -33.13 359.30 -8.57 -41.70 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.65 Total: 3.19 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -3.16 Total: -1.86 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.42 Total: -45.79 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.93 Total: -18.57 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.13 -8.57 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276421104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.857 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds