Wall clock time and date at job start Tue Mar 31 2020 12:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46491 * 109.47068 * 2 1 4 4 C 1.46502 * 120.00255 * 269.99967 * 3 2 1 5 5 C 1.50693 * 109.47471 * 270.00530 * 4 3 2 6 6 H 1.08004 * 120.00441 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00330 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00227 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00025 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47152 * 90.00152 * 9 7 5 11 11 H 1.48496 * 109.47480 * 210.00586 * 9 7 5 12 12 H 1.48504 * 109.46750 * 330.00014 * 9 7 5 13 13 C 1.34779 * 119.99941 * 90.00430 * 3 2 1 14 14 O 1.21589 * 119.99726 * 179.97438 * 13 3 2 15 15 N 1.34774 * 119.99871 * 359.97438 * 13 3 2 16 16 C 1.39950 * 119.99920 * 175.67828 * 15 13 3 17 17 C 1.38891 * 120.06792 * 33.44820 * 16 15 13 18 18 C 1.38086 * 119.92651 * 180.02562 * 17 16 15 19 19 C 1.50707 * 119.96303 * 179.97438 * 18 17 16 20 20 C 1.38296 * 120.07387 * 359.95420 * 18 17 16 21 21 N 1.48025 * 119.93066 * 180.02562 * 20 18 17 22 22 O 1.21803 * 120.00065 * 172.37170 * 21 20 18 23 23 O 1.21801 * 120.00304 * 352.36693 * 21 20 18 24 24 C 1.38261 * 120.14002 * 0.02562 * 20 18 17 25 25 C 1.38134 * 120.06981 * 359.97438 * 24 20 18 26 26 C 1.50695 * 120.03729 * 179.72308 * 25 24 20 27 27 H 1.09001 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47093 * 299.99533 * 1 2 3 29 29 H 1.08998 * 109.47921 * 59.99834 * 1 2 3 30 30 H 1.09005 * 109.46238 * 240.00271 * 2 1 3 31 31 H 1.08998 * 109.47190 * 120.00302 * 2 1 3 32 32 H 1.09000 * 109.47005 * 30.00664 * 4 3 2 33 33 H 1.09001 * 109.47096 * 150.00354 * 4 3 2 34 34 H 0.97004 * 120.00111 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00280 * 355.68116 * 15 13 3 36 36 H 1.07997 * 120.03403 * 0.04506 * 17 16 15 37 37 H 1.08999 * 109.46986 * 262.52439 * 19 18 17 38 38 H 1.08999 * 109.47126 * 22.51414 * 19 18 17 39 39 H 1.09001 * 109.47216 * 142.52067 * 19 18 17 40 40 H 1.08001 * 119.96480 * 180.02562 * 24 20 18 41 41 H 1.09009 * 109.46802 * 89.99550 * 26 25 24 42 42 H 1.08999 * 109.47156 * 209.99746 * 26 25 24 43 43 H 1.09000 * 109.47096 * 330.00398 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6856 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0960 7 6 4.1489 2.3896 -2.8780 8 7 5.3908 2.1825 -3.2580 9 14 3.0123 3.4341 -3.9299 10 1 3.1147 4.8545 -3.5092 11 1 3.4055 3.3107 -5.3565 12 1 1.6128 2.9671 -3.7602 13 6 2.2430 2.0164 1.1672 14 8 2.6487 3.1626 1.1672 15 7 2.0179 1.3812 2.3344 16 6 2.3364 2.0076 3.5447 17 6 2.2115 3.3853 3.6692 18 6 2.5270 4.0004 4.8646 19 6 2.3923 5.4952 5.0004 20 6 2.9660 3.2461 5.9374 21 7 3.3028 3.9087 7.2175 22 8 3.5550 3.2380 8.2025 23 8 3.3277 5.1245 7.2859 24 6 3.0910 1.8744 5.8168 25 6 2.7770 1.2531 4.6237 26 6 2.9195 -0.2413 4.4911 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1410 -1.1383 34 1 5.7166 2.5724 -4.0843 35 1 1.6353 0.4899 2.3356 36 1 1.8677 3.9747 2.8321 37 1 3.3646 5.9631 4.8465 38 1 1.6888 5.8659 4.2549 39 1 2.0261 5.7379 5.9980 40 1 3.4337 1.2881 6.6565 41 1 1.9840 -0.7222 4.7773 42 1 3.1563 -0.4934 3.4575 43 1 3.7210 -0.5891 5.1428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276421104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:13 Heat of formation + Delta-G solvation = -18.145665 kcal Electronic energy + Delta-G solvation = -27384.012773 eV Core-core repulsion = 23432.309803 eV Total energy + Delta-G solvation = -3951.702970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.31043 -42.10898 -40.33140 -37.76424 -37.29878 -36.55149 -34.91625 -34.51546 -32.07777 -31.84985 -30.48206 -29.47918 -27.59796 -26.03648 -24.68613 -24.43799 -23.71154 -22.49655 -21.14158 -19.83796 -19.79941 -19.15981 -18.94840 -18.65661 -18.27194 -17.03004 -16.84371 -16.46402 -16.04592 -15.67866 -15.16977 -15.11358 -14.82265 -14.57509 -14.45396 -14.32585 -14.18132 -13.91631 -13.75816 -13.52464 -13.22372 -13.04872 -12.93647 -12.69022 -12.61740 -12.49165 -12.44649 -12.23077 -12.11712 -12.01240 -11.86737 -11.74187 -11.66987 -11.16582 -10.83611 -10.03823 -9.77928 -9.36146 -8.34496 -6.39966 -1.19139 -0.09314 0.25921 0.41581 1.31889 1.37444 1.40707 1.46288 1.87688 2.30331 2.31700 2.75895 3.00983 3.30980 3.36543 3.64960 3.72110 3.94964 4.04216 4.19365 4.30751 4.39684 4.44339 4.57724 4.59754 4.67217 4.71670 4.74492 4.77770 4.83221 4.94062 4.95401 4.97754 5.05397 5.10113 5.18926 5.32305 5.34370 5.43859 5.49485 5.61013 5.80476 6.22698 6.59363 6.61962 6.80923 7.20907 7.40097 8.82343 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016278 B = 0.003386 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.724879 B = 8266.583039 C = 9092.253440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.603 5.603 4 C 0.241 3.759 5 C -0.536 4.536 6 H 0.028 0.972 7 C 0.012 3.988 8 N -0.946 5.946 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.278 1.278 12 H -0.233 1.233 13 C 0.695 3.305 14 O -0.609 6.609 15 N -0.666 5.666 16 C 0.225 3.775 17 C -0.144 4.144 18 C -0.006 4.006 19 C -0.127 4.127 20 C -0.086 4.086 21 N 0.041 4.959 22 O -0.183 6.183 23 O -0.183 6.183 24 C -0.026 4.026 25 C -0.115 4.115 26 C -0.114 4.114 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.023 0.977 34 H 0.268 0.732 35 H 0.427 0.573 36 H 0.147 0.853 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.178 0.822 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.105 -6.892 15.247 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.336 5.336 4 C 0.119 3.881 5 C -0.575 4.575 6 H 0.047 0.953 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.768 3.232 10 H -0.203 1.203 11 H -0.203 1.203 12 H -0.156 1.156 13 C 0.397 3.603 14 O -0.488 6.488 15 N -0.316 5.316 16 C 0.126 3.874 17 C -0.165 4.165 18 C -0.008 4.008 19 C -0.183 4.183 20 C -0.171 4.171 21 N 0.552 4.448 22 O -0.395 6.395 23 O -0.393 6.393 24 C -0.046 4.046 25 C -0.119 4.119 26 C -0.171 4.171 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.269 0.731 36 H 0.165 0.835 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.195 0.805 41 H 0.125 0.875 42 H 0.088 0.912 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.873 -6.418 14.364 20.328 hybrid contribution 0.368 0.577 -0.557 0.882 sum -12.505 -5.841 13.807 19.523 Atomic orbital electron populations 1.22202 0.93634 1.04020 1.02294 1.21830 0.95787 0.80897 1.04298 1.47261 1.66814 1.15313 1.04218 1.19289 0.94818 0.93009 0.80997 1.21561 0.97142 1.32162 1.06637 0.95317 1.25823 0.96629 0.97166 0.98988 1.70048 1.17521 1.46549 1.24449 0.85753 0.80669 0.79012 0.77733 1.20336 1.20348 1.15627 1.16070 0.78630 0.84483 0.81081 1.90880 1.53171 1.18553 1.86162 1.42727 1.65571 1.21246 1.02085 1.17933 0.92285 0.91997 0.85175 1.21285 1.03857 0.94436 0.96929 1.19805 0.92520 0.98315 0.90162 1.21261 1.04027 0.88130 1.04892 1.20994 1.17262 0.94198 0.84627 1.43676 0.97383 1.00862 1.02858 1.94483 1.52840 1.64785 1.27384 1.94465 1.56436 0.96571 1.91805 1.20888 0.94397 0.90523 0.98751 1.19848 1.01726 0.99046 0.91255 1.20908 1.05287 0.86843 1.04020 0.88285 0.92314 0.93056 0.89942 0.89015 0.92593 0.95904 0.92321 0.73142 0.83522 0.89597 0.89909 0.88486 0.80500 0.87526 0.91198 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 10.24 71.98 0.74 -2.08 16 2 C 0.09 2.25 5.85 86.38 0.51 2.75 16 3 N -0.60 -21.62 2.46 -844.22 -2.07 -23.70 16 4 C 0.24 10.80 4.23 85.63 0.36 11.16 16 5 C -0.54 -29.97 9.94 25.60 0.25 -29.72 16 6 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 7 C 0.01 0.69 5.47 84.65 0.46 1.15 16 8 N -0.95 -58.37 13.96 21.45 0.30 -58.07 16 9 Si 0.95 42.52 27.47 68.60 1.88 44.41 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.23 -9.18 6.54 99.48 0.65 -8.53 16 13 C 0.70 25.43 8.13 179.05 1.46 26.89 16 14 O -0.61 -27.97 13.26 -4.00 -0.05 -28.03 16 15 N -0.67 -16.90 4.62 -317.17 -1.46 -18.37 16 16 C 0.23 5.74 6.31 38.15 0.24 5.98 16 17 C -0.14 -4.18 8.33 22.39 0.19 -3.99 16 18 C -0.01 -0.15 5.88 -19.88 -0.12 -0.27 16 19 C -0.13 -3.05 8.63 71.24 0.62 -2.43 16 20 C -0.09 -2.20 6.83 36.39 0.25 -1.95 16 21 N 0.04 1.15 4.45 -46.41 -0.21 0.94 16 22 O -0.18 -5.15 18.46 18.88 0.35 -4.81 16 23 O -0.18 -5.35 15.39 18.88 0.29 -5.06 16 24 C -0.03 -0.53 9.21 22.25 0.20 -0.33 16 25 C -0.11 -2.23 5.90 -19.75 -0.12 -2.34 16 26 C -0.11 -1.32 9.47 71.23 0.67 -0.64 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 2.18 8.07 -2.38 -0.02 2.16 16 31 H 0.09 1.60 6.43 -2.39 -0.02 1.58 16 32 H 0.06 2.27 7.13 -2.39 -0.02 2.25 16 33 H 0.02 1.10 6.85 -2.39 -0.02 1.09 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.43 7.34 5.59 -92.71 -0.52 6.82 16 36 H 0.15 4.91 6.10 -2.91 -0.02 4.89 16 37 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.08 1.79 8.03 -2.39 -0.02 1.77 16 39 H 0.10 2.25 5.95 -2.39 -0.01 2.24 16 40 H 0.18 2.72 7.62 -2.91 -0.02 2.69 16 41 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.07 0.89 7.14 -2.39 -0.02 0.87 16 43 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 Total: -1.00 -76.26 359.30 5.22 -71.04 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.48 Total: 17.46 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 5.71 Total: 4.18 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -3.44 Total: -99.19 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: 0.59 Total: -37.89 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.88 Total: 44.41 kcal Total: -76.26 5.22 -71.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276421104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.898 kcal (2) G-P(sol) polarization free energy of solvation -76.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds