Wall clock time and date at job start Tue Mar 31 2020 13:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00205 * 2 1 4 4 C 1.52999 * 109.46786 * 89.99908 * 3 2 1 5 5 C 1.50698 * 109.47120 * 180.02562 * 4 3 2 6 6 C 1.38261 * 119.99833 * 261.36280 * 5 4 3 7 7 C 1.38214 * 119.99875 * 179.72604 * 6 5 4 8 8 C 1.38257 * 120.00146 * 0.27609 * 7 6 5 9 9 C 1.38217 * 119.99640 * 359.97438 * 8 7 6 10 10 C 1.38217 * 120.00175 * 81.55619 * 5 4 3 11 11 N 1.48010 * 119.99827 * 0.04405 * 10 5 4 12 12 O 1.21803 * 119.99817 * 174.35487 * 11 10 5 13 13 O 1.21794 * 120.00406 * 354.35190 * 11 10 5 14 14 C 1.34778 * 120.00172 * 180.02562 * 2 1 3 15 15 O 1.21582 * 120.00103 * 179.97438 * 14 2 1 16 16 N 1.34785 * 119.99847 * 0.02562 * 14 2 1 17 17 C 1.46501 * 119.99697 * 179.97438 * 16 14 2 18 18 C 1.53002 * 109.46724 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.46757 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00420 * 359.97438 * 19 18 17 21 21 C 1.37880 * 120.00085 * 179.97438 * 19 18 17 22 22 N 1.31506 * 120.00645 * 179.97438 * 21 19 18 23 23 Si 1.86812 * 119.99699 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47046 * 89.99737 * 23 21 19 25 25 H 1.48495 * 109.47174 * 209.99456 * 23 21 19 26 26 H 1.48494 * 109.47064 * 329.99916 * 23 21 19 27 27 H 1.09001 * 109.47195 * 90.00131 * 1 2 3 28 28 H 1.09005 * 109.47040 * 209.99517 * 1 2 3 29 29 H 1.08998 * 109.47541 * 329.99600 * 1 2 3 30 30 H 1.09001 * 109.46831 * 330.00897 * 3 2 1 31 31 H 1.08992 * 109.47499 * 210.00303 * 3 2 1 32 32 H 1.09006 * 109.47062 * 60.00704 * 4 3 2 33 33 H 1.08997 * 109.47863 * 300.00608 * 4 3 2 34 34 H 1.08000 * 120.00279 * 359.97438 * 6 5 4 35 35 H 1.08001 * 119.99711 * 180.25276 * 7 6 5 36 36 H 1.07996 * 120.00225 * 179.97438 * 8 7 6 37 37 H 1.08005 * 119.99361 * 179.97438 * 9 8 7 38 38 H 0.96997 * 120.00066 * 0.02562 * 16 14 2 39 39 H 1.09003 * 109.46927 * 299.99799 * 17 16 14 40 40 H 1.08998 * 109.47282 * 59.99762 * 17 16 14 41 41 H 1.09003 * 109.47201 * 299.99566 * 18 17 16 42 42 H 1.08998 * 109.47488 * 59.99824 * 18 17 16 43 43 H 0.97004 * 120.00726 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 6 3.2054 3.0156 1.4426 6 6 4.5763 3.0229 1.6223 7 6 5.2677 4.2197 1.6167 8 6 4.5877 5.4100 1.4372 9 6 3.2166 5.4031 1.2627 10 6 2.5252 4.2059 1.2670 11 7 1.0569 4.1985 1.0799 12 8 0.4443 5.2500 1.0282 13 8 0.4614 3.1411 0.9776 14 6 2.1389 -1.1672 -0.0005 15 8 3.3547 -1.1672 -0.0010 16 7 1.4650 -2.3345 -0.0016 17 6 2.1976 -3.6032 -0.0027 18 6 1.2033 -4.7661 -0.0044 19 6 1.9568 -6.0711 -0.0049 20 1 3.0368 -6.0711 -0.0046 21 6 1.2675 -7.2652 -0.0059 22 7 1.9250 -8.4041 -0.0068 23 14 -0.6006 -7.2653 -0.0072 24 1 -1.0946 -7.2647 -1.4077 25 1 -1.0961 -8.4781 0.6918 26 1 -1.0961 -6.0531 0.6929 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6083 2.0284 -0.5137 31 1 3.1498 1.1384 -0.5138 32 1 3.0416 0.9506 1.9563 33 1 1.5001 1.8406 1.9564 34 1 5.1075 2.0931 1.7630 35 1 6.3390 4.2250 1.7530 36 1 5.1279 6.3452 1.4332 37 1 2.6854 6.3331 1.1228 38 1 0.4950 -2.3345 -0.0023 39 1 2.8242 -3.6601 -0.8928 40 1 2.8242 -3.6617 0.8872 41 1 0.5763 -4.7094 0.8855 42 1 0.5769 -4.7074 -0.8945 43 1 1.4400 -9.2443 -0.0079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286840553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:10 Heat of formation + Delta-G solvation = -1.222254 kcal Electronic energy + Delta-G solvation = -26546.908292 eV Core-core repulsion = 22595.939176 eV Total energy + Delta-G solvation = -3950.969116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.57199 -40.14034 -39.69301 -37.07397 -35.94016 -34.87890 -33.72440 -32.68265 -32.33127 -30.34624 -29.18808 -27.04019 -26.37312 -25.10529 -23.64334 -23.06670 -21.94172 -20.78503 -19.65541 -19.35182 -18.87764 -17.90069 -17.73987 -16.92573 -16.79235 -16.13699 -15.96370 -15.58567 -15.13068 -14.37282 -14.20384 -14.15442 -14.02373 -13.63130 -13.54223 -13.28684 -12.81517 -12.70593 -12.60674 -12.43717 -12.32661 -11.89601 -11.73541 -11.66056 -11.41842 -11.26436 -11.18387 -10.66937 -10.36539 -10.22964 -10.08034 -9.94546 -9.74246 -9.67411 -9.30537 -8.75736 -8.60127 -8.28052 -6.09306 -4.09178 -0.50293 0.45621 1.00298 1.10572 2.76508 2.90734 3.27094 3.34778 3.36116 3.49795 3.90900 3.92511 4.19923 4.31891 4.39574 4.42568 4.48081 4.72385 4.85504 4.98861 5.11099 5.18529 5.23759 5.25864 5.38226 5.41798 5.49798 5.58969 5.70161 5.76902 5.83956 5.88188 6.09987 6.24291 6.27129 6.53027 6.61003 6.84624 7.06029 7.26735 7.28901 7.39407 7.69511 8.25712 8.47121 8.90443 8.95670 9.50978 11.03694 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024955 B = 0.002382 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.742662 B =11752.596279 C =12687.795926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.633 5.633 3 C 0.155 3.845 4 C -0.118 4.118 5 C -0.005 4.005 6 C -0.114 4.114 7 C -0.063 4.063 8 C -0.126 4.126 9 C -0.055 4.055 10 C -0.048 4.048 11 N 0.032 4.968 12 O -0.172 6.172 13 O -0.152 6.152 14 C 0.700 3.300 15 O -0.596 6.596 16 N -0.741 5.741 17 C 0.148 3.852 18 C -0.022 4.022 19 C -0.521 4.521 20 H 0.076 0.924 21 C 0.069 3.931 22 N -0.899 5.899 23 Si 0.882 3.118 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.393 0.607 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.021 0.979 42 H 0.017 0.983 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.539 30.902 3.385 31.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.371 5.371 3 C 0.030 3.970 4 C -0.157 4.157 5 C -0.007 4.007 6 C -0.133 4.133 7 C -0.081 4.081 8 C -0.145 4.145 9 C -0.074 4.074 10 C -0.131 4.131 11 N 0.548 4.452 12 O -0.384 6.384 13 O -0.368 6.368 14 C 0.402 3.598 15 O -0.474 6.474 16 N -0.396 5.396 17 C 0.025 3.975 18 C -0.060 4.060 19 C -0.560 4.560 20 H 0.094 0.906 21 C -0.133 4.133 22 N -0.537 5.537 23 Si 0.709 3.291 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.191 1.191 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.227 0.773 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.035 0.965 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.088 30.663 3.459 31.012 hybrid contribution -1.869 -0.105 -0.007 1.872 sum 1.219 30.558 3.452 30.776 Atomic orbital electron populations 1.21783 0.79583 1.03469 1.01803 1.46925 1.06454 1.04539 1.79156 1.21015 0.97540 0.84329 0.94105 1.21524 1.01472 0.92066 1.00626 1.19880 0.94377 0.93759 0.92724 1.21343 0.92049 0.99892 0.99987 1.21690 1.01321 0.92023 0.93070 1.21224 0.92718 0.99526 1.00984 1.21056 0.94869 0.96817 0.94665 1.21004 0.79848 0.96642 1.15617 1.43587 1.03466 1.00375 0.97775 1.94540 1.68115 1.21199 1.54534 1.94470 1.70033 1.19713 1.52536 1.15994 0.85398 0.80458 0.77981 1.90872 1.11620 1.86355 1.58583 1.45673 1.09940 1.05405 1.78561 1.21371 0.95066 0.79657 1.01416 1.19795 0.95497 0.93882 0.96784 1.20915 0.95261 0.88257 1.51535 0.90611 1.25002 0.98488 0.95426 0.94404 1.69899 1.35859 0.97458 1.50523 0.86749 0.86075 0.77737 0.78505 1.20234 1.21309 1.19052 0.92821 0.91504 0.89787 0.90680 0.90038 0.89377 0.87893 0.83147 0.83857 0.83644 0.83068 0.77262 0.92211 0.92197 0.96051 0.96469 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.20 59.85 0.61 1.40 16 2 N -0.63 -8.41 2.87 -187.36 -0.54 -8.95 16 3 C 0.15 1.81 4.89 -4.04 -0.02 1.79 16 4 C -0.12 -1.24 4.93 -27.88 -0.14 -1.37 16 5 C -0.01 -0.05 5.13 -104.62 -0.54 -0.58 16 6 C -0.11 -0.80 9.67 -39.58 -0.38 -1.18 16 7 C -0.06 -0.30 10.05 -39.58 -0.40 -0.70 16 8 C -0.13 -0.57 10.05 -39.58 -0.40 -0.97 16 9 C -0.06 -0.36 9.56 -39.58 -0.38 -0.74 16 10 C -0.05 -0.43 6.83 -79.95 -0.55 -0.98 16 11 N 0.03 0.35 4.45 33.96 0.15 0.50 16 12 O -0.17 -2.00 18.46 -29.46 -0.54 -2.55 16 13 O -0.15 -1.74 12.36 -29.46 -0.36 -2.10 16 14 C 0.70 12.11 8.28 -86.91 -0.72 11.39 16 15 O -0.60 -12.29 15.92 5.29 0.08 -12.21 16 16 N -0.74 -12.81 5.42 -65.22 -0.35 -13.16 16 17 C 0.15 3.08 5.61 -4.04 -0.02 3.06 16 18 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 19 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 20 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 21 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 23 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.65 6.37 -51.93 -0.33 0.32 16 29 H 0.08 0.78 6.89 -51.93 -0.36 0.42 16 30 H 0.07 0.82 6.51 -51.93 -0.34 0.48 16 31 H 0.08 1.06 7.42 -51.93 -0.39 0.67 16 32 H 0.09 1.01 8.02 -51.93 -0.42 0.59 16 33 H 0.10 1.11 5.95 -51.93 -0.31 0.80 16 34 H 0.15 0.96 8.05 -52.49 -0.42 0.54 16 35 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 36 H 0.15 0.25 8.06 -52.49 -0.42 -0.17 16 37 H 0.15 0.80 7.62 -52.48 -0.40 0.40 16 38 H 0.39 5.79 6.20 -40.82 -0.25 5.54 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 42 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -34.37 360.81 -9.18 -43.55 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.68 Total: 2.31 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -3.48 Total: -2.63 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.03 Total: -48.27 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.82 Total: -16.86 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.37 -9.18 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286840553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.326 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds