Wall clock time and date at job start Tue Mar 31 2020 13:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00205 * 2 1 4 4 C 1.52999 * 109.46786 * 89.99908 * 3 2 1 5 5 C 1.50698 * 109.47120 * 180.02562 * 4 3 2 6 6 C 1.38261 * 119.99833 * 261.36280 * 5 4 3 7 7 C 1.38214 * 119.99875 * 179.72604 * 6 5 4 8 8 C 1.38257 * 120.00146 * 0.27609 * 7 6 5 9 9 C 1.38217 * 119.99640 * 359.97438 * 8 7 6 10 10 C 1.38217 * 120.00175 * 81.55619 * 5 4 3 11 11 N 1.48010 * 119.99827 * 0.04405 * 10 5 4 12 12 O 1.21803 * 119.99817 * 174.35487 * 11 10 5 13 13 O 1.21794 * 120.00406 * 354.35190 * 11 10 5 14 14 C 1.34778 * 120.00172 * 180.02562 * 2 1 3 15 15 O 1.21582 * 120.00103 * 179.97438 * 14 2 1 16 16 N 1.34785 * 119.99847 * 0.02562 * 14 2 1 17 17 C 1.46501 * 119.99697 * 179.97438 * 16 14 2 18 18 C 1.53002 * 109.46724 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.46757 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00420 * 359.97438 * 19 18 17 21 21 C 1.37880 * 120.00085 * 179.97438 * 19 18 17 22 22 N 1.31506 * 120.00645 * 179.97438 * 21 19 18 23 23 Si 1.86812 * 119.99699 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47046 * 89.99737 * 23 21 19 25 25 H 1.48495 * 109.47174 * 209.99456 * 23 21 19 26 26 H 1.48494 * 109.47064 * 329.99916 * 23 21 19 27 27 H 1.09001 * 109.47195 * 90.00131 * 1 2 3 28 28 H 1.09005 * 109.47040 * 209.99517 * 1 2 3 29 29 H 1.08998 * 109.47541 * 329.99600 * 1 2 3 30 30 H 1.09001 * 109.46831 * 330.00897 * 3 2 1 31 31 H 1.08992 * 109.47499 * 210.00303 * 3 2 1 32 32 H 1.09006 * 109.47062 * 60.00704 * 4 3 2 33 33 H 1.08997 * 109.47863 * 300.00608 * 4 3 2 34 34 H 1.08000 * 120.00279 * 359.97438 * 6 5 4 35 35 H 1.08001 * 119.99711 * 180.25276 * 7 6 5 36 36 H 1.07996 * 120.00225 * 179.97438 * 8 7 6 37 37 H 1.08005 * 119.99361 * 179.97438 * 9 8 7 38 38 H 0.96997 * 120.00066 * 0.02562 * 16 14 2 39 39 H 1.09003 * 109.46927 * 299.99799 * 17 16 14 40 40 H 1.08998 * 109.47282 * 59.99762 * 17 16 14 41 41 H 1.09003 * 109.47201 * 299.99566 * 18 17 16 42 42 H 1.08998 * 109.47488 * 59.99824 * 18 17 16 43 43 H 0.97004 * 120.00726 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 6 3.2054 3.0156 1.4426 6 6 4.5763 3.0229 1.6223 7 6 5.2677 4.2197 1.6167 8 6 4.5877 5.4100 1.4372 9 6 3.2166 5.4031 1.2627 10 6 2.5252 4.2059 1.2670 11 7 1.0569 4.1985 1.0799 12 8 0.4443 5.2500 1.0282 13 8 0.4614 3.1411 0.9776 14 6 2.1389 -1.1672 -0.0005 15 8 3.3547 -1.1672 -0.0010 16 7 1.4650 -2.3345 -0.0016 17 6 2.1976 -3.6032 -0.0027 18 6 1.2033 -4.7661 -0.0044 19 6 1.9568 -6.0711 -0.0049 20 1 3.0368 -6.0711 -0.0046 21 6 1.2675 -7.2652 -0.0059 22 7 1.9250 -8.4041 -0.0068 23 14 -0.6006 -7.2653 -0.0072 24 1 -1.0946 -7.2647 -1.4077 25 1 -1.0961 -8.4781 0.6918 26 1 -1.0961 -6.0531 0.6929 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6083 2.0284 -0.5137 31 1 3.1498 1.1384 -0.5138 32 1 3.0416 0.9506 1.9563 33 1 1.5001 1.8406 1.9564 34 1 5.1075 2.0931 1.7630 35 1 6.3390 4.2250 1.7530 36 1 5.1279 6.3452 1.4332 37 1 2.6854 6.3331 1.1228 38 1 0.4950 -2.3345 -0.0023 39 1 2.8242 -3.6601 -0.8928 40 1 2.8242 -3.6617 0.8872 41 1 0.5763 -4.7094 0.8855 42 1 0.5769 -4.7074 -0.8945 43 1 1.4400 -9.2443 -0.0079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286840553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:10 Heat of formation + Delta-G solvation = -22.550406 kcal Electronic energy + Delta-G solvation = -26547.833150 eV Core-core repulsion = 22595.939176 eV Total energy + Delta-G solvation = -3951.893974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.33189 -41.27483 -40.44772 -37.92355 -37.11995 -36.45192 -34.94396 -34.25731 -32.89684 -31.97808 -30.16417 -27.86597 -27.41425 -26.57629 -24.75862 -23.68326 -22.77788 -22.52304 -21.00434 -20.00593 -19.64542 -19.07589 -18.95106 -18.60658 -17.56562 -17.12938 -16.75062 -16.72981 -16.25505 -15.77601 -15.45682 -15.43976 -15.19242 -14.67748 -14.50058 -14.43463 -14.13722 -13.98631 -13.42808 -13.25568 -13.20512 -13.09188 -13.01283 -12.62712 -12.50113 -12.42688 -12.17167 -12.14933 -12.07367 -11.75088 -11.52497 -11.50106 -11.20637 -10.77643 -10.59115 -10.31497 -10.11856 -9.49201 -8.28791 -6.35819 -1.18738 -0.04108 0.33875 0.42210 1.40392 1.42763 1.54105 1.65502 2.11576 2.33277 2.38025 3.00964 3.06207 3.33414 3.37734 3.73933 3.96512 3.98245 4.05141 4.11121 4.19328 4.32723 4.35770 4.45547 4.46161 4.58649 4.67139 4.71030 4.76931 4.86617 4.92207 4.99009 5.09333 5.15125 5.16887 5.30348 5.42437 5.44870 5.50004 5.58779 5.68017 5.93968 6.24207 6.56568 6.71027 6.98701 7.28504 7.55399 8.87852 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024955 B = 0.002382 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.742662 B =11752.596279 C =12687.795926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.625 5.625 3 C 0.157 3.843 4 C -0.107 4.107 5 C -0.023 4.023 6 C -0.125 4.125 7 C -0.050 4.050 8 C -0.112 4.112 9 C -0.058 4.058 10 C -0.064 4.064 11 N 0.033 4.967 12 O -0.192 6.192 13 O -0.167 6.167 14 C 0.697 3.303 15 O -0.635 6.635 16 N -0.732 5.732 17 C 0.165 3.835 18 C -0.012 4.012 19 C -0.537 4.537 20 H 0.030 0.970 21 C 0.004 3.996 22 N -0.950 5.950 23 Si 0.958 3.042 24 H -0.265 1.265 25 H -0.287 1.287 26 H -0.237 1.237 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.164 0.836 38 H 0.408 0.592 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 33.614 3.591 33.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.361 5.361 3 C 0.033 3.967 4 C -0.146 4.146 5 C -0.025 4.025 6 C -0.143 4.143 7 C -0.068 4.068 8 C -0.130 4.130 9 C -0.077 4.077 10 C -0.148 4.148 11 N 0.545 4.455 12 O -0.401 6.401 13 O -0.381 6.381 14 C 0.398 3.602 15 O -0.517 6.517 16 N -0.389 5.389 17 C 0.040 3.960 18 C -0.049 4.049 19 C -0.576 4.576 20 H 0.048 0.952 21 C -0.193 4.193 22 N -0.590 5.590 23 Si 0.781 3.219 24 H -0.190 1.190 25 H -0.213 1.213 26 H -0.160 1.160 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.168 0.832 35 H 0.194 0.806 36 H 0.201 0.799 37 H 0.181 0.819 38 H 0.246 0.754 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.828 33.447 3.665 33.697 hybrid contribution -1.293 -0.872 -0.062 1.561 sum 0.535 32.575 3.602 32.778 Atomic orbital electron populations 1.22018 0.77375 1.04557 1.03116 1.46970 1.07811 1.03654 1.77696 1.21070 0.96822 0.83674 0.95156 1.21298 1.01262 0.92774 0.99250 1.19785 0.95141 0.92856 0.94727 1.21501 0.91359 1.01190 1.00264 1.22106 1.02891 0.91027 0.90728 1.21693 0.91763 1.00954 0.98569 1.21392 0.95888 0.96295 0.94133 1.21174 0.78453 0.97700 1.17483 1.43887 1.04396 1.00009 0.97238 1.94519 1.68885 1.21317 1.55423 1.94437 1.70815 1.19824 1.53048 1.16117 0.84985 0.81254 0.77802 1.90843 1.13534 1.87035 1.60274 1.45313 1.10514 1.04254 1.78828 1.20880 0.94456 0.80870 0.99761 1.19642 0.95487 0.91825 0.97987 1.21234 0.93787 0.91091 1.51464 0.95195 1.26070 1.04876 0.94645 0.93716 1.70069 1.38501 0.98438 1.52015 0.85548 0.78254 0.78824 0.79316 1.19032 1.21258 1.15986 0.91342 0.90571 0.88593 0.89628 0.91614 0.90973 0.88331 0.83162 0.80560 0.79912 0.81890 0.75418 0.94074 0.93963 0.94548 0.94731 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 10.20 127.77 1.30 2.64 16 2 N -0.63 -16.23 2.87 -864.93 -2.48 -18.71 16 3 C 0.16 3.68 4.89 86.38 0.42 4.10 16 4 C -0.11 -2.28 4.93 29.85 0.15 -2.13 16 5 C -0.02 -0.40 5.13 -19.86 -0.10 -0.50 16 6 C -0.12 -1.59 9.67 22.27 0.22 -1.37 16 7 C -0.05 -0.31 10.05 22.27 0.22 -0.09 16 8 C -0.11 -0.59 10.05 22.27 0.22 -0.37 16 9 C -0.06 -0.63 9.56 22.27 0.21 -0.42 16 10 C -0.06 -1.11 6.83 36.38 0.25 -0.86 16 11 N 0.03 0.71 4.45 -46.47 -0.21 0.50 16 12 O -0.19 -4.45 18.46 18.88 0.35 -4.11 16 13 O -0.17 -3.79 12.36 18.89 0.23 -3.56 16 14 C 0.70 24.05 8.28 179.05 1.48 25.53 16 15 O -0.64 -26.91 15.92 -3.97 -0.06 -26.98 16 16 N -0.73 -24.69 5.42 -478.52 -2.59 -27.28 16 17 C 0.16 6.94 5.61 86.38 0.48 7.43 16 18 C -0.01 -0.52 4.16 29.85 0.12 -0.40 16 19 C -0.54 -30.91 9.66 25.60 0.25 -30.66 16 20 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 21 C 0.00 0.23 5.47 84.66 0.46 0.69 16 22 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 23 Si 0.96 42.59 27.47 68.60 1.88 44.48 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 26 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.29 6.37 -2.38 -0.02 1.28 16 29 H 0.10 1.61 6.89 -2.39 -0.02 1.60 16 30 H 0.09 1.84 6.51 -2.39 -0.02 1.82 16 31 H 0.07 1.76 7.42 -2.39 -0.02 1.74 16 32 H 0.07 1.73 8.02 -2.38 -0.02 1.71 16 33 H 0.10 2.15 5.95 -2.39 -0.01 2.14 16 34 H 0.15 1.87 8.05 -2.91 -0.02 1.84 16 35 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16 36 H 0.18 -0.35 8.06 -2.91 -0.02 -0.37 16 37 H 0.16 1.35 7.62 -2.91 -0.02 1.33 16 38 H 0.41 11.10 6.20 -92.71 -0.58 10.52 16 39 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.04 1.55 7.20 -2.39 -0.02 1.53 16 42 H 0.03 1.46 7.57 -2.39 -0.02 1.44 16 43 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -77.96 360.81 3.52 -74.44 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.41 Total: 16.79 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 5.70 Total: 3.59 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -4.99 Total: -104.66 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: 0.52 Total: -34.64 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.48 kcal Total: -77.96 3.52 -74.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286840553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.889 kcal (2) G-P(sol) polarization free energy of solvation -77.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds