Wall clock time and date at job start Tue Mar 31 2020 13:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99973 * 2 1 4 4 C 1.53005 * 109.47006 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46639 * 179.97438 * 4 3 2 6 6 N 1.31135 * 126.54808 * 90.25547 * 5 4 3 7 7 C 1.34495 * 105.61321 * 180.11662 * 6 5 4 8 8 C 1.50703 * 126.29039 * 179.90242 * 7 6 5 9 9 N 1.46894 * 109.46852 * 269.71663 * 8 7 6 10 10 C 1.46905 * 110.99525 * 169.99882 * 9 8 7 11 11 C 1.50703 * 109.47192 * 288.71445 * 10 9 8 12 12 H 1.07999 * 119.99458 * 354.67778 * 11 10 9 13 13 C 1.37877 * 120.00125 * 174.68141 * 11 10 9 14 14 N 1.31506 * 119.99975 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99892 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47265 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47255 * 119.99851 * 15 13 11 18 18 H 1.48503 * 109.46844 * 239.99890 * 15 13 11 19 19 C 1.46903 * 111.00290 * 293.94791 * 9 8 7 20 20 C 1.50698 * 109.47423 * 163.99883 * 19 9 8 21 21 C 1.34508 * 125.78787 * 95.44002 * 20 19 9 22 22 C 1.41387 * 106.83676 * 179.97438 * 21 20 19 23 23 C 1.34510 * 106.84171 * 0.02562 * 22 21 20 24 24 O 1.34301 * 108.42245 * 359.97438 * 23 22 21 25 25 N 1.29953 * 107.42478 * 359.64137 * 7 6 5 26 26 O 1.21301 * 110.24863 * 0.22585 * 25 7 6 27 27 H 1.09001 * 109.46970 * 60.00520 * 1 2 3 28 28 H 1.08997 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46921 * 300.00550 * 1 2 3 30 30 H 1.09000 * 109.47515 * 59.99730 * 3 2 1 31 31 H 1.09001 * 109.46635 * 299.99704 * 3 2 1 32 32 H 1.09000 * 109.47020 * 59.99652 * 4 3 2 33 33 H 1.08999 * 109.46961 * 299.99810 * 4 3 2 34 34 H 1.08992 * 109.47140 * 149.70920 * 8 7 6 35 35 H 1.09000 * 109.46723 * 29.71369 * 8 7 6 36 36 H 1.08993 * 109.47854 * 48.71768 * 10 9 8 37 37 H 1.09009 * 109.47162 * 168.71805 * 10 9 8 38 38 H 0.97000 * 120.00170 * 180.02562 * 14 13 11 39 39 H 1.08998 * 109.46317 * 43.99494 * 19 9 8 40 40 H 1.09003 * 109.46883 * 284.00323 * 19 9 8 41 41 H 1.08002 * 126.58674 * 0.02562 * 21 20 19 42 42 H 1.08008 * 126.57758 * 179.97438 * 22 21 20 43 43 H 1.08004 * 125.78780 * 180.26646 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1484 2.5614 0.0000 6 7 4.4699 3.2735 1.0532 7 6 4.9765 4.4228 0.5721 8 6 5.4920 5.5807 1.3874 9 7 4.3944 6.5206 1.6513 10 6 4.7953 7.5350 2.6354 11 6 4.9059 6.8980 3.9967 12 1 4.6167 5.8668 4.1354 13 6 5.3762 7.6319 5.0651 14 7 5.7278 8.8878 4.8962 15 14 5.5140 6.8421 6.7522 16 1 5.0581 5.4309 6.6770 17 1 6.9281 6.8825 7.2038 18 1 4.6647 7.5854 7.7175 19 6 3.9287 7.1488 0.4077 20 6 2.5831 7.7863 0.6402 21 6 2.3672 9.0777 0.9484 22 6 0.9684 9.2400 1.0754 23 6 0.4134 8.0380 0.8378 24 8 1.3961 7.1614 0.5745 25 7 4.9452 4.3491 -0.7250 26 8 4.4730 3.2876 -1.0739 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8575 0.6435 -0.8891 33 1 3.8568 0.6439 0.8909 34 1 6.2821 6.0901 0.8359 35 1 5.8891 5.2110 2.3328 36 1 5.7600 7.9554 2.3516 37 1 4.0479 8.3279 2.6650 38 1 6.0591 9.4039 5.6477 39 1 3.8424 6.3916 -0.3715 40 1 4.6429 7.9110 0.0961 41 1 3.1181 9.8438 1.0739 42 1 0.4459 10.1537 1.3177 43 1 -0.6436 7.8167 0.8513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290124382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:50 Heat of formation + Delta-G solvation = 51.320262 kcal Electronic energy + Delta-G solvation = -27023.041019 eV Core-core repulsion = 23074.350318 eV Total energy + Delta-G solvation = -3948.690702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.42616 -42.07697 -38.27675 -37.34083 -35.52474 -33.95769 -32.67277 -32.46386 -30.69381 -30.19415 -27.84642 -26.86553 -26.61444 -24.39254 -24.09415 -22.98484 -21.61021 -21.19722 -20.55851 -19.75839 -18.06261 -17.38749 -16.94053 -16.64357 -16.44455 -16.30170 -15.68359 -15.37531 -15.03943 -14.78113 -14.38886 -14.22307 -13.96797 -13.69562 -13.25832 -12.69587 -12.55065 -12.42192 -12.37601 -12.23668 -12.09649 -11.73671 -11.61006 -11.51098 -11.40080 -11.35105 -11.02857 -10.77892 -10.64381 -10.62962 -10.01148 -9.98749 -9.77775 -9.45383 -9.25687 -8.47153 -8.04386 -7.53394 -6.05895 -4.07166 1.23624 2.14796 2.42872 2.73461 3.06913 3.30668 3.38482 3.44589 3.45075 3.53226 3.92018 4.24657 4.42065 4.66721 4.73819 4.89881 4.97509 5.08414 5.11359 5.17011 5.21014 5.30227 5.39768 5.43706 5.45438 5.47912 5.56009 5.67416 5.76209 5.84930 5.96531 6.14051 6.23099 6.35239 6.38180 6.52363 6.76789 6.93799 7.04411 7.16244 7.58990 7.73187 7.87949 8.03095 8.35681 8.40643 9.01267 9.57450 11.04659 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008963 B = 0.004048 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.346430 B = 6915.848154 C = 8160.160320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.064 3.936 4 C -0.020 4.020 5 C 0.164 3.836 6 N -0.451 5.451 7 C 0.196 3.804 8 C 0.149 3.851 9 N -0.525 5.525 10 C 0.190 3.810 11 C -0.508 4.508 12 H 0.067 0.933 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.896 3.104 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.123 3.877 20 C 0.020 3.980 21 C -0.204 4.204 22 C -0.210 4.210 23 C -0.056 4.056 24 O -0.173 6.173 25 N -0.388 5.388 26 O 0.073 5.927 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.055 0.945 35 H 0.121 0.879 36 H 0.002 0.998 37 H 0.042 0.958 38 H 0.261 0.739 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 -11.381 -12.477 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.014 4.014 4 C -0.059 4.059 5 C -0.058 4.058 6 N -0.185 5.185 7 C -0.077 4.077 8 C 0.020 3.980 9 N -0.252 5.252 10 C 0.066 3.934 11 C -0.547 4.547 12 H 0.085 0.915 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.724 3.276 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.005 4.005 20 C -0.031 4.031 21 C -0.224 4.224 22 C -0.229 4.229 23 C -0.124 4.124 24 O -0.069 6.069 25 N -0.097 5.097 26 O 0.015 5.985 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.136 0.864 34 H 0.073 0.927 35 H 0.139 0.861 36 H 0.019 0.981 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -8.267 -11.223 -12.320 18.603 hybrid contribution 0.311 0.637 0.774 1.049 sum -7.956 -10.587 -11.546 17.570 Atomic orbital electron populations 1.22771 0.80257 1.02914 1.00442 1.87799 1.20298 1.27150 1.95588 1.22404 0.91756 0.85277 1.01921 1.19843 0.93590 0.85428 1.07001 1.28390 0.98275 0.97837 0.81249 1.71966 1.14851 1.03431 1.28221 1.26117 0.98061 0.95950 0.87563 1.20342 0.91854 0.87158 0.98628 1.62055 1.35088 1.19696 1.08314 1.19917 0.95142 0.89194 0.89147 1.21181 1.42386 0.98688 0.92453 0.91494 1.24956 0.95376 0.94848 0.99182 1.69957 1.44298 1.07937 1.31488 0.86458 0.77552 0.79695 0.83892 1.19484 1.21063 1.21047 1.20525 0.88108 0.97915 0.93959 1.22217 0.85741 0.91252 1.03896 1.21570 0.96412 0.96820 1.07599 1.21738 0.94475 0.98832 1.07849 1.23839 0.93198 0.88516 1.06850 1.83984 1.14736 1.38993 1.69162 1.74645 1.17937 1.00898 1.16213 1.85251 1.56897 1.20591 1.35767 0.93850 0.89367 0.93656 0.91784 0.92406 0.87399 0.86408 0.92656 0.86063 0.98064 0.93966 0.92943 0.90461 0.91911 0.83660 0.83932 0.78769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.78 10.70 -35.23 -0.38 -4.15 16 3 C 0.06 0.62 5.92 37.16 0.22 0.84 16 4 C -0.02 -0.18 6.21 -27.88 -0.17 -0.36 16 5 C 0.16 2.22 7.77 -13.05 -0.10 2.12 16 6 N -0.45 -7.82 11.55 -9.86 -0.11 -7.93 16 7 C 0.20 3.57 6.89 -156.37 -1.08 2.49 16 8 C 0.15 2.94 5.44 -4.98 -0.03 2.91 16 9 N -0.53 -11.44 4.39 -238.96 -1.05 -12.49 16 10 C 0.19 4.81 4.57 -4.97 -0.02 4.79 16 11 C -0.51 -14.08 8.36 -34.44 -0.29 -14.37 16 12 H 0.07 1.88 7.70 -52.49 -0.40 1.48 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 15 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C 0.12 2.37 5.38 -4.98 -0.03 2.34 16 20 C 0.02 0.39 6.30 -35.63 -0.22 0.16 16 21 C -0.20 -3.80 9.57 -39.70 -0.38 -4.18 16 22 C -0.21 -3.41 10.91 -39.70 -0.43 -3.84 16 23 C -0.06 -0.87 12.09 29.41 0.36 -0.52 16 24 O -0.17 -3.28 10.65 5.71 0.06 -3.22 16 25 N -0.39 -6.57 11.06 30.90 0.34 -6.23 16 26 O 0.07 1.07 11.31 18.11 0.20 1.27 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 35 H 0.12 2.54 7.16 -51.93 -0.37 2.17 16 36 H 0.00 0.04 8.06 -51.93 -0.42 -0.38 16 37 H 0.04 1.14 6.23 -51.92 -0.32 0.82 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.08 1.44 6.08 -51.93 -0.32 1.12 16 40 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 41 H 0.15 2.63 8.06 -52.49 -0.42 2.21 16 42 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 43 H 0.20 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -32.84 370.55 -6.83 -39.68 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.04 Total: 1.04 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.16 Total: -4.74 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.09 Total: -52.05 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.11 Total: -6.10 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.84 -6.83 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290124382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.996 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds