Wall clock time and date at job start Tue Mar 31 2020 13:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99973 * 2 1 4 4 C 1.53005 * 109.47006 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46639 * 179.97438 * 4 3 2 6 6 N 1.31135 * 126.54808 * 90.25547 * 5 4 3 7 7 C 1.34495 * 105.61321 * 180.11662 * 6 5 4 8 8 C 1.50703 * 126.29039 * 179.90242 * 7 6 5 9 9 N 1.46894 * 109.46852 * 269.71663 * 8 7 6 10 10 C 1.46905 * 110.99525 * 169.99882 * 9 8 7 11 11 C 1.50703 * 109.47192 * 288.71445 * 10 9 8 12 12 H 1.07999 * 119.99458 * 354.67778 * 11 10 9 13 13 C 1.37877 * 120.00125 * 174.68141 * 11 10 9 14 14 N 1.31506 * 119.99975 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99892 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47265 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47255 * 119.99851 * 15 13 11 18 18 H 1.48503 * 109.46844 * 239.99890 * 15 13 11 19 19 C 1.46903 * 111.00290 * 293.94791 * 9 8 7 20 20 C 1.50698 * 109.47423 * 163.99883 * 19 9 8 21 21 C 1.34508 * 125.78787 * 95.44002 * 20 19 9 22 22 C 1.41387 * 106.83676 * 179.97438 * 21 20 19 23 23 C 1.34510 * 106.84171 * 0.02562 * 22 21 20 24 24 O 1.34301 * 108.42245 * 359.97438 * 23 22 21 25 25 N 1.29953 * 107.42478 * 359.64137 * 7 6 5 26 26 O 1.21301 * 110.24863 * 0.22585 * 25 7 6 27 27 H 1.09001 * 109.46970 * 60.00520 * 1 2 3 28 28 H 1.08997 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46921 * 300.00550 * 1 2 3 30 30 H 1.09000 * 109.47515 * 59.99730 * 3 2 1 31 31 H 1.09001 * 109.46635 * 299.99704 * 3 2 1 32 32 H 1.09000 * 109.47020 * 59.99652 * 4 3 2 33 33 H 1.08999 * 109.46961 * 299.99810 * 4 3 2 34 34 H 1.08992 * 109.47140 * 149.70920 * 8 7 6 35 35 H 1.09000 * 109.46723 * 29.71369 * 8 7 6 36 36 H 1.08993 * 109.47854 * 48.71768 * 10 9 8 37 37 H 1.09009 * 109.47162 * 168.71805 * 10 9 8 38 38 H 0.97000 * 120.00170 * 180.02562 * 14 13 11 39 39 H 1.08998 * 109.46317 * 43.99494 * 19 9 8 40 40 H 1.09003 * 109.46883 * 284.00323 * 19 9 8 41 41 H 1.08002 * 126.58674 * 0.02562 * 21 20 19 42 42 H 1.08008 * 126.57758 * 179.97438 * 22 21 20 43 43 H 1.08004 * 125.78780 * 180.26646 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1484 2.5614 0.0000 6 7 4.4699 3.2735 1.0532 7 6 4.9765 4.4228 0.5721 8 6 5.4920 5.5807 1.3874 9 7 4.3944 6.5206 1.6513 10 6 4.7953 7.5350 2.6354 11 6 4.9059 6.8980 3.9967 12 1 4.6167 5.8668 4.1354 13 6 5.3762 7.6319 5.0651 14 7 5.7278 8.8878 4.8962 15 14 5.5140 6.8421 6.7522 16 1 5.0581 5.4309 6.6770 17 1 6.9281 6.8825 7.2038 18 1 4.6647 7.5854 7.7175 19 6 3.9287 7.1488 0.4077 20 6 2.5831 7.7863 0.6402 21 6 2.3672 9.0777 0.9484 22 6 0.9684 9.2400 1.0754 23 6 0.4134 8.0380 0.8378 24 8 1.3961 7.1614 0.5745 25 7 4.9452 4.3491 -0.7250 26 8 4.4730 3.2876 -1.0739 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8575 0.6435 -0.8891 33 1 3.8568 0.6439 0.8909 34 1 6.2821 6.0901 0.8359 35 1 5.8891 5.2110 2.3328 36 1 5.7600 7.9554 2.3516 37 1 4.0479 8.3279 2.6650 38 1 6.0591 9.4039 5.6477 39 1 3.8424 6.3916 -0.3715 40 1 4.6429 7.9110 0.0961 41 1 3.1181 9.8438 1.0739 42 1 0.4459 10.1537 1.3177 43 1 -0.6436 7.8167 0.8513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290124382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:49 Heat of formation + Delta-G solvation = 27.368618 kcal Electronic energy + Delta-G solvation = -27024.079640 eV Core-core repulsion = 23074.350318 eV Total energy + Delta-G solvation = -3949.729323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.71200 -43.45261 -39.00199 -38.96442 -36.83235 -35.14964 -34.64055 -33.87779 -31.88830 -31.54152 -29.69707 -28.16197 -27.51045 -26.00559 -25.20156 -24.33105 -23.09967 -22.60045 -21.90324 -21.22211 -19.33313 -18.72761 -18.44531 -18.23992 -17.50719 -17.17210 -17.01297 -16.85764 -16.25036 -16.03732 -15.98041 -15.69451 -15.25687 -14.79837 -14.60900 -14.14533 -14.07579 -13.76537 -13.65922 -13.52328 -13.38238 -13.28149 -13.06635 -12.81604 -12.66958 -12.54795 -12.40947 -12.38786 -12.20953 -12.08348 -11.98033 -11.38780 -10.99861 -10.82623 -10.67144 -10.60921 -9.46632 -9.25463 -8.21128 -6.30001 0.05660 0.76963 1.10638 1.39534 1.41072 1.54569 1.70238 1.71436 2.12354 2.39835 2.48248 2.81696 3.07441 3.12330 3.30109 3.80742 3.82157 3.95751 4.02493 4.04277 4.12390 4.25171 4.30340 4.33047 4.36666 4.52674 4.55907 4.57261 4.64762 4.77145 4.89239 4.90693 4.92462 4.98948 5.02580 5.09922 5.13497 5.21498 5.59493 5.64206 5.96926 6.04243 6.10632 6.24628 6.39383 6.83542 7.12525 7.38895 8.89479 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008963 B = 0.004048 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.346430 B = 6915.848154 C = 8160.160320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.068 3.932 4 C -0.016 4.016 5 C 0.187 3.813 6 N -0.487 5.487 7 C 0.180 3.820 8 C 0.154 3.846 9 N -0.534 5.534 10 C 0.210 3.790 11 C -0.522 4.522 12 H 0.057 0.943 13 C 0.010 3.990 14 N -0.928 5.928 15 Si 0.962 3.038 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.279 1.279 19 C 0.129 3.871 20 C -0.012 4.012 21 C -0.215 4.215 22 C -0.223 4.223 23 C -0.043 4.043 24 O -0.190 6.190 25 N -0.393 5.393 26 O 0.087 5.913 27 H 0.053 0.947 28 H 0.105 0.895 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.141 0.859 33 H 0.126 0.874 34 H 0.063 0.937 35 H 0.102 0.898 36 H -0.020 1.020 37 H 0.022 0.978 38 H 0.265 0.735 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.140 0.860 42 H 0.171 0.829 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.932 -13.003 -12.896 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C -0.010 4.010 4 C -0.054 4.054 5 C -0.033 4.033 6 N -0.220 5.220 7 C -0.093 4.093 8 C 0.025 3.975 9 N -0.260 5.260 10 C 0.084 3.916 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.188 4.188 14 N -0.569 5.569 15 Si 0.787 3.213 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.205 1.205 19 C 0.002 3.998 20 C -0.062 4.062 21 C -0.235 4.235 22 C -0.242 4.242 23 C -0.109 4.109 24 O -0.087 6.087 25 N -0.101 5.101 26 O 0.026 5.974 27 H 0.071 0.929 28 H 0.123 0.877 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.159 0.841 33 H 0.144 0.856 34 H 0.081 0.919 35 H 0.120 0.880 36 H -0.002 1.002 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.158 0.842 42 H 0.188 0.812 43 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -9.813 -12.849 -12.745 20.587 hybrid contribution 0.680 1.082 0.819 1.518 sum -9.133 -11.766 -11.927 19.081 Atomic orbital electron populations 1.22969 0.79020 1.04231 1.00852 1.87773 1.21671 1.26867 1.95642 1.22307 0.91761 0.85443 1.01513 1.20106 0.93278 0.82978 1.09068 1.29095 0.96079 0.98257 0.79913 1.71934 1.16408 1.03804 1.29848 1.25721 0.99550 0.96057 0.87935 1.20129 0.91611 0.87506 0.98238 1.61915 1.35738 1.19119 1.09253 1.19494 0.93244 0.89325 0.89492 1.21391 1.42492 0.98332 0.93833 0.92468 1.25757 0.94889 0.95292 1.02887 1.70059 1.44918 1.09157 1.32728 0.85442 0.77902 0.78748 0.79218 1.19207 1.20086 1.20503 1.20463 0.88515 0.98033 0.92810 1.22220 0.86106 0.91733 1.06149 1.21786 0.97960 0.96565 1.07231 1.22100 0.93339 1.00510 1.08270 1.24815 0.94443 0.87668 1.04018 1.83970 1.15066 1.40023 1.69615 1.74611 1.18048 1.01886 1.15508 1.85229 1.56383 1.20019 1.35743 0.92874 0.87680 0.93831 0.93525 0.91600 0.84054 0.85595 0.91885 0.87989 1.00210 0.96026 0.92638 0.89846 0.91503 0.84235 0.81174 0.74053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -6.89 10.70 -148.98 -1.59 -8.49 16 3 C 0.07 1.17 5.92 71.98 0.43 1.60 16 4 C -0.02 -0.25 6.21 29.85 0.19 -0.07 16 5 C 0.19 4.81 7.77 88.38 0.69 5.49 16 6 N -0.49 -16.80 11.55 -303.18 -3.50 -20.30 16 7 C 0.18 6.63 6.89 138.46 0.95 7.58 16 8 C 0.15 6.31 5.44 85.56 0.47 6.77 16 9 N -0.53 -24.14 4.39 -909.94 -4.00 -28.14 16 10 C 0.21 11.08 4.57 85.56 0.39 11.47 16 11 C -0.52 -29.75 8.36 25.60 0.21 -29.53 16 12 H 0.06 3.31 7.70 -2.91 -0.02 3.29 16 13 C 0.01 0.59 5.46 84.66 0.46 1.05 16 14 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 15 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 C 0.13 5.14 5.38 85.56 0.46 5.60 16 20 C -0.01 -0.46 6.30 24.83 0.16 -0.31 16 21 C -0.22 -8.14 9.57 22.19 0.21 -7.93 16 22 C -0.22 -6.96 10.91 22.19 0.24 -6.71 16 23 C -0.04 -1.23 12.09 66.97 0.81 -0.42 16 24 O -0.19 -7.09 10.65 -2.48 -0.03 -7.12 16 25 N -0.39 -13.14 11.06 -60.30 -0.67 -13.80 16 26 O 0.09 2.41 11.31 74.87 0.85 3.26 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 2.41 8.12 -2.39 -0.02 2.40 16 35 H 0.10 4.50 7.16 -2.39 -0.02 4.48 16 36 H -0.02 -1.11 8.06 -2.39 -0.02 -1.13 16 37 H 0.02 1.23 6.23 -2.38 -0.01 1.21 16 38 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.08 3.17 6.08 -2.39 -0.01 3.15 16 40 H 0.07 2.54 8.05 -2.39 -0.02 2.52 16 41 H 0.14 5.28 8.06 -2.91 -0.02 5.26 16 42 H 0.17 4.20 8.06 -2.91 -0.02 4.17 16 43 H 0.24 4.32 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -72.05 370.55 1.30 -70.75 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 1.02 Total: 15.71 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 6.91 Total: -3.84 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -7.88 Total: -117.01 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.77 Total: -12.34 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -72.05 1.30 -70.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290124382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.116 kcal (2) G-P(sol) polarization free energy of solvation -72.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds