Wall clock time and date at job start Tue Mar 31 2020 13:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 119.99808 * 2 1 4 4 N 1.46501 * 109.46735 * 125.00359 * 3 2 1 5 5 C 1.46498 * 119.99721 * 269.99662 * 4 3 2 6 6 C 1.50706 * 109.47517 * 270.00488 * 5 4 3 7 7 H 1.07998 * 119.99331 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00215 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00397 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99885 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47421 * 59.99475 * 10 8 6 12 12 H 1.48495 * 109.47415 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47294 * 299.99777 * 10 8 6 14 14 C 1.34767 * 120.00077 * 90.00264 * 4 3 2 15 15 O 1.21285 * 120.00371 * 179.97438 * 14 4 3 16 16 C 1.50702 * 120.00401 * 359.97438 * 14 4 3 17 17 C 1.52995 * 109.47338 * 180.02562 * 16 14 4 18 18 C 1.50702 * 109.46958 * 180.02562 * 17 16 14 19 19 C 1.38263 * 119.93682 * 270.02149 * 18 17 16 20 20 C 1.38176 * 120.09586 * 180.02562 * 19 18 17 21 21 C 1.38664 * 119.97332 * 359.97378 * 20 19 18 22 22 O 1.35948 * 120.06477 * 180.28026 * 21 20 19 23 23 C 1.42895 * 117.00499 * 359.72167 * 22 21 20 24 24 C 1.38915 * 119.86796 * 359.97438 * 21 20 19 25 25 F 1.35098 * 120.04463 * 180.02562 * 24 21 20 26 26 C 1.38254 * 119.93981 * 89.99990 * 18 17 16 27 27 H 1.07998 * 119.99878 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99884 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99884 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47159 * 5.00105 * 3 2 1 31 31 H 1.08998 * 109.46778 * 245.00218 * 3 2 1 32 32 H 1.09002 * 109.47637 * 30.00060 * 5 4 3 33 33 H 1.09003 * 109.47115 * 150.00377 * 5 4 3 34 34 H 0.96996 * 120.00064 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.46883 * 59.99685 * 16 14 4 36 36 H 1.09007 * 109.46669 * 300.00388 * 16 14 4 37 37 H 1.08994 * 109.47278 * 59.99950 * 17 16 14 38 38 H 1.08994 * 109.47039 * 299.99507 * 17 16 14 39 39 H 1.07999 * 119.95092 * 0.02562 * 19 18 17 40 40 H 1.08008 * 120.01550 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.47574 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.46836 * 300.00713 * 23 22 21 43 43 H 1.09001 * 109.46915 * 60.00028 * 23 22 21 44 44 H 1.08004 * 119.98065 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3436 2.4805 7 1 3.3040 3.8369 1.6369 8 6 2.5193 4.0664 3.6087 9 7 1.9599 3.4657 4.6361 10 14 2.8737 5.8992 3.6778 11 1 2.1379 6.5872 2.5866 12 1 2.4327 6.4396 4.9888 13 1 4.3316 6.1281 3.5127 14 6 4.2497 0.8662 0.9823 15 8 5.0200 0.8887 1.9188 16 6 4.6970 0.3175 -0.3481 17 6 6.1531 -0.1410 -0.2471 18 6 6.6005 -0.6892 -1.5777 19 6 6.4382 -2.0329 -1.8603 20 6 6.8477 -2.5390 -3.0790 21 6 7.4219 -1.6985 -4.0206 22 8 7.8203 -2.1934 -5.2225 23 6 7.6228 -3.5908 -5.4464 24 6 7.5834 -0.3485 -3.7358 25 9 8.1419 0.4738 -4.6507 26 6 7.1721 0.1526 -2.5138 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.4888 1.6966 2.5460 33 1 3.0990 1.3602 3.2259 34 1 1.7317 3.9742 5.4300 35 1 4.6120 1.0939 -1.1084 36 1 4.0678 -0.5295 -0.6218 37 1 6.2377 -0.9175 0.5131 38 1 6.7825 0.7056 0.0267 39 1 5.9906 -2.6877 -1.1273 40 1 6.7199 -3.5888 -3.2985 41 1 7.9834 -3.8540 -6.4408 42 1 8.1740 -4.1601 -4.6979 43 1 6.5608 -3.8243 -5.3710 44 1 7.2971 1.2019 -2.2909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292430133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:04 Heat of formation + Delta-G solvation = -79.083449 kcal Electronic energy + Delta-G solvation = -26234.936237 eV Core-core repulsion = 22260.670845 eV Total energy + Delta-G solvation = -3974.265392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.91287 -40.32953 -39.20467 -37.97521 -35.69783 -33.59689 -33.03523 -32.05020 -30.96073 -29.69575 -27.97948 -27.21354 -25.50341 -24.45702 -23.00385 -22.45157 -21.09936 -19.93441 -18.57031 -18.32003 -17.17269 -17.04415 -16.48492 -16.40672 -16.16317 -15.55650 -15.26080 -15.09054 -15.03605 -14.56419 -14.46894 -14.31161 -14.02577 -13.61581 -13.04566 -12.94682 -12.61436 -12.53425 -12.37753 -12.04770 -12.00914 -11.66848 -11.58241 -11.38985 -11.23779 -11.08729 -11.07831 -10.90184 -10.79889 -10.56697 -10.18404 -9.65243 -9.19823 -9.15996 -8.92120 -8.42587 -8.29809 -7.68566 -6.03614 -4.08439 0.90560 1.00032 2.44136 2.83091 3.30321 3.32208 3.36679 3.37985 3.44886 3.96398 4.04809 4.42172 4.44723 4.54933 4.70421 4.76366 4.89601 5.02798 5.08098 5.11961 5.20719 5.23289 5.29701 5.30917 5.37833 5.41148 5.59122 5.68609 5.80680 5.83072 5.89942 5.98713 6.01638 6.19739 6.24101 6.42266 6.44501 6.78064 6.90500 6.98733 7.09364 7.45455 7.55459 7.92730 8.24210 8.41801 8.90464 9.09358 9.56624 11.04448 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.002680 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.315187 B =10446.691186 C =11273.755761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.167 4.167 3 C 0.136 3.864 4 N -0.594 5.594 5 C 0.247 3.753 6 C -0.526 4.526 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.504 3.496 15 O -0.541 6.541 16 C -0.135 4.135 17 C -0.063 4.063 18 C -0.080 4.080 19 C -0.086 4.086 20 C -0.179 4.179 21 C 0.085 3.915 22 O -0.313 6.313 23 C 0.027 3.973 24 C 0.071 3.929 25 F -0.134 7.134 26 C -0.112 4.112 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.101 0.899 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.859 -14.560 -18.873 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.186 4.186 3 C 0.012 3.988 4 N -0.325 5.325 5 C 0.128 3.872 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.291 3.709 15 O -0.419 6.419 16 C -0.176 4.176 17 C -0.101 4.101 18 C -0.081 4.081 19 C -0.104 4.104 20 C -0.198 4.198 21 C 0.039 3.961 22 O -0.226 6.226 23 C -0.068 4.068 24 C 0.051 3.949 25 F -0.113 7.113 26 C -0.131 4.131 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.299 -14.362 -18.361 24.147 hybrid contribution 0.006 0.856 -0.060 0.858 sum 6.305 -13.507 -18.420 23.696 Atomic orbital electron populations 1.23818 0.95877 1.01742 1.00692 1.23424 0.96372 0.99041 0.99805 1.20583 0.93151 0.95268 0.89819 1.48233 1.10580 1.60160 1.13529 1.19261 0.95348 0.93728 0.78858 1.21395 1.40552 0.93365 1.01219 0.92536 1.24929 0.95071 0.98729 0.95353 1.69922 1.42024 1.36262 1.05164 0.86571 0.78845 0.84937 0.77140 1.20269 1.21196 1.20164 1.20347 0.82308 0.78610 0.89650 1.90675 1.52516 1.56545 1.42174 1.21719 0.96774 1.01972 0.97100 1.20333 0.95353 1.02210 0.92214 1.19796 0.98682 0.93157 0.96448 1.20973 0.98326 0.95022 0.96090 1.21117 1.04087 0.99920 0.94676 1.18989 0.98579 0.91879 0.86651 1.86123 1.78925 1.26097 1.31478 1.23097 1.01590 0.79233 1.02881 1.16963 1.03568 0.85410 0.88958 1.91496 1.83059 1.71359 1.65362 1.21002 0.99487 1.01438 0.91182 0.88827 0.88294 0.87827 0.89532 0.90713 0.95062 0.93924 0.92680 0.89355 0.89509 0.89809 0.89767 0.84839 0.84578 0.88065 0.92474 0.92425 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.01 0.42 -1.91 16 2 C -0.17 -2.30 9.74 -36.03 -0.35 -2.65 16 3 C 0.14 2.15 5.65 -5.19 -0.03 2.12 16 4 N -0.59 -12.23 2.44 -176.43 -0.43 -12.66 16 5 C 0.25 6.41 5.16 -5.19 -0.03 6.39 16 6 C -0.53 -14.83 9.39 -34.44 -0.32 -15.16 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 10 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.50 9.98 7.67 -10.99 -0.08 9.89 16 15 O -0.54 -13.12 15.56 5.55 0.09 -13.03 16 16 C -0.14 -1.85 4.23 -27.88 -0.12 -1.97 16 17 C -0.06 -0.81 4.63 -27.88 -0.13 -0.93 16 18 C -0.08 -0.88 5.13 -104.61 -0.54 -1.41 16 19 C -0.09 -0.81 9.69 -39.60 -0.38 -1.19 16 20 C -0.18 -1.60 9.04 -39.45 -0.36 -1.96 16 21 C 0.08 0.93 6.69 -39.17 -0.26 0.67 16 22 O -0.31 -3.28 10.36 -19.58 -0.20 -3.49 16 23 C 0.03 0.16 9.81 101.05 0.99 1.15 16 24 C 0.07 0.86 7.31 -39.30 -0.29 0.57 16 25 F -0.13 -1.79 17.11 2.25 0.04 -1.75 16 26 C -0.11 -1.27 9.67 -39.54 -0.38 -1.65 16 27 H 0.09 1.02 8.06 -52.49 -0.42 0.59 16 28 H 0.10 1.25 7.84 -52.49 -0.41 0.83 16 29 H 0.10 1.31 7.83 -52.49 -0.41 0.90 16 30 H 0.09 1.44 7.72 -51.93 -0.40 1.04 16 31 H 0.07 0.98 6.44 -51.93 -0.33 0.65 16 32 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.09 1.10 7.40 -51.93 -0.38 0.71 16 36 H 0.09 1.00 7.77 -51.92 -0.40 0.60 16 37 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 38 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.14 0.85 6.30 -52.48 -0.33 0.52 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 43 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 44 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 379.87 15.07 5.72 5.72 Total: -1.00 -34.02 379.87 -7.38 -41.40 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.35 Total: -0.77 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.96 Total: -6.40 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.31 Total: -38.51 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.12 Total: -16.52 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.02 -7.38 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292430133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.687 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds