Wall clock time and date at job start Tue Mar 31 2020 13:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 119.99808 * 2 1 4 4 N 1.46501 * 109.46735 * 125.00359 * 3 2 1 5 5 C 1.46498 * 119.99721 * 269.99662 * 4 3 2 6 6 C 1.50706 * 109.47517 * 270.00488 * 5 4 3 7 7 H 1.07998 * 119.99331 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00215 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00397 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99885 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47421 * 59.99475 * 10 8 6 12 12 H 1.48495 * 109.47415 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47294 * 299.99777 * 10 8 6 14 14 C 1.34767 * 120.00077 * 90.00264 * 4 3 2 15 15 O 1.21285 * 120.00371 * 179.97438 * 14 4 3 16 16 C 1.50702 * 120.00401 * 359.97438 * 14 4 3 17 17 C 1.52995 * 109.47338 * 180.02562 * 16 14 4 18 18 C 1.50702 * 109.46958 * 180.02562 * 17 16 14 19 19 C 1.38263 * 119.93682 * 270.02149 * 18 17 16 20 20 C 1.38176 * 120.09586 * 180.02562 * 19 18 17 21 21 C 1.38664 * 119.97332 * 359.97378 * 20 19 18 22 22 O 1.35948 * 120.06477 * 180.28026 * 21 20 19 23 23 C 1.42895 * 117.00499 * 359.72167 * 22 21 20 24 24 C 1.38915 * 119.86796 * 359.97438 * 21 20 19 25 25 F 1.35098 * 120.04463 * 180.02562 * 24 21 20 26 26 C 1.38254 * 119.93981 * 89.99990 * 18 17 16 27 27 H 1.07998 * 119.99878 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99884 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99884 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47159 * 5.00105 * 3 2 1 31 31 H 1.08998 * 109.46778 * 245.00218 * 3 2 1 32 32 H 1.09002 * 109.47637 * 30.00060 * 5 4 3 33 33 H 1.09003 * 109.47115 * 150.00377 * 5 4 3 34 34 H 0.96996 * 120.00064 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.46883 * 59.99685 * 16 14 4 36 36 H 1.09007 * 109.46669 * 300.00388 * 16 14 4 37 37 H 1.08994 * 109.47278 * 59.99950 * 17 16 14 38 38 H 1.08994 * 109.47039 * 299.99507 * 17 16 14 39 39 H 1.07999 * 119.95092 * 0.02562 * 19 18 17 40 40 H 1.08008 * 120.01550 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.47574 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.46836 * 300.00713 * 23 22 21 43 43 H 1.09001 * 109.46915 * 60.00028 * 23 22 21 44 44 H 1.08004 * 119.98065 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3436 2.4805 7 1 3.3040 3.8369 1.6369 8 6 2.5193 4.0664 3.6087 9 7 1.9599 3.4657 4.6361 10 14 2.8737 5.8992 3.6778 11 1 2.1379 6.5872 2.5866 12 1 2.4327 6.4396 4.9888 13 1 4.3316 6.1281 3.5127 14 6 4.2497 0.8662 0.9823 15 8 5.0200 0.8887 1.9188 16 6 4.6970 0.3175 -0.3481 17 6 6.1531 -0.1410 -0.2471 18 6 6.6005 -0.6892 -1.5777 19 6 6.4382 -2.0329 -1.8603 20 6 6.8477 -2.5390 -3.0790 21 6 7.4219 -1.6985 -4.0206 22 8 7.8203 -2.1934 -5.2225 23 6 7.6228 -3.5908 -5.4464 24 6 7.5834 -0.3485 -3.7358 25 9 8.1419 0.4738 -4.6507 26 6 7.1721 0.1526 -2.5138 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.4888 1.6966 2.5460 33 1 3.0990 1.3602 3.2259 34 1 1.7317 3.9742 5.4300 35 1 4.6120 1.0939 -1.1084 36 1 4.0678 -0.5295 -0.6218 37 1 6.2377 -0.9175 0.5131 38 1 6.7825 0.7056 0.0267 39 1 5.9906 -2.6877 -1.1273 40 1 6.7199 -3.5888 -3.2985 41 1 7.9834 -3.8540 -6.4408 42 1 8.1740 -4.1601 -4.6979 43 1 6.5608 -3.8243 -5.3710 44 1 7.2971 1.2019 -2.2909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292430133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:03 Heat of formation + Delta-G solvation = -98.795292 kcal Electronic energy + Delta-G solvation = -26235.791007 eV Core-core repulsion = 22260.670845 eV Total energy + Delta-G solvation = -3975.120162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.83321 -41.13727 -40.65752 -38.80040 -37.20221 -35.19565 -34.37207 -33.62971 -31.72362 -30.79115 -29.37538 -28.14985 -26.86297 -25.84806 -24.07393 -23.76148 -22.07318 -21.07386 -19.80192 -19.28409 -18.63059 -18.08369 -17.95594 -17.42486 -17.24773 -17.10981 -16.43959 -16.20644 -16.03411 -15.78889 -15.65403 -15.18472 -14.99450 -14.85109 -14.41462 -14.12497 -14.04922 -13.64410 -13.52661 -13.30324 -13.05452 -12.94137 -12.86801 -12.81325 -12.56000 -12.37603 -12.23241 -12.19594 -12.08393 -11.85113 -11.84564 -11.67352 -10.63635 -10.56750 -10.28062 -9.93269 -9.42933 -9.11283 -8.21376 -6.36044 0.12720 0.20264 1.35761 1.37428 1.40707 1.48033 1.88782 2.21597 2.35116 2.46267 2.62815 3.08096 3.21187 3.58518 3.73765 3.91473 4.06365 4.09884 4.16993 4.27033 4.29416 4.33497 4.40391 4.41728 4.47539 4.53639 4.70452 4.74747 4.85962 4.89557 4.93066 5.05442 5.09722 5.11100 5.18582 5.23870 5.26011 5.54358 5.57404 5.66415 5.73914 5.78952 5.99401 6.08199 6.30766 6.71309 6.82607 7.29869 7.52332 8.85457 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.002680 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.315187 B =10446.691186 C =11273.755761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.181 4.181 3 C 0.132 3.868 4 N -0.600 5.600 5 C 0.264 3.736 6 C -0.542 4.542 7 H 0.053 0.947 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.965 3.035 11 H -0.261 1.261 12 H -0.279 1.279 13 H -0.277 1.277 14 C 0.495 3.505 15 O -0.596 6.596 16 C -0.119 4.119 17 C -0.056 4.056 18 C -0.086 4.086 19 C -0.077 4.077 20 C -0.171 4.171 21 C 0.082 3.918 22 O -0.336 6.336 23 C 0.016 3.984 24 C 0.041 3.959 25 F -0.149 7.149 26 C -0.115 4.115 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.019 0.981 33 H -0.003 1.003 34 H 0.267 0.733 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.157 0.843 40 H 0.169 0.831 41 H 0.117 0.883 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.368 -15.893 -20.921 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.200 4.200 3 C 0.010 3.990 4 N -0.330 5.330 5 C 0.143 3.857 6 C -0.581 4.581 7 H 0.071 0.929 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.790 3.210 11 H -0.185 1.185 12 H -0.204 1.204 13 H -0.203 1.203 14 C 0.285 3.715 15 O -0.478 6.478 16 C -0.158 4.158 17 C -0.093 4.093 18 C -0.087 4.087 19 C -0.095 4.095 20 C -0.189 4.189 21 C 0.036 3.964 22 O -0.250 6.250 23 C -0.078 4.078 24 C 0.021 3.979 25 F -0.128 7.128 26 C -0.134 4.134 27 H 0.135 0.865 28 H 0.113 0.887 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.037 0.963 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.174 0.826 40 H 0.186 0.814 41 H 0.135 0.865 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.784 -15.714 -20.466 26.443 hybrid contribution 0.135 1.170 0.544 1.297 sum 5.919 -14.544 -19.922 25.366 Atomic orbital electron populations 1.24043 0.95696 1.02745 0.98697 1.23356 0.96705 0.98403 1.01516 1.20822 0.92705 0.96278 0.89170 1.48235 1.12000 1.59892 1.12916 1.18662 0.93732 0.92617 0.80727 1.21691 1.40501 0.94562 1.01338 0.92854 1.25844 0.94714 1.03662 0.94915 1.70043 1.42848 1.38152 1.05749 0.85504 0.78515 0.79165 0.77856 1.18529 1.20385 1.20304 1.21444 0.81246 0.77482 0.91321 1.90643 1.53878 1.58650 1.44608 1.21697 0.97699 1.03270 0.93174 1.20183 0.94430 1.01454 0.93275 1.19578 0.99832 0.93958 0.95285 1.21245 0.97236 0.94428 0.96621 1.21419 1.02666 1.01142 0.93694 1.19181 0.98224 0.91651 0.87317 1.86103 1.78953 1.28688 1.31296 1.23437 1.02958 0.77041 1.04350 1.17242 1.05136 0.86223 0.89254 1.91447 1.83523 1.71921 1.65892 1.21024 0.99534 1.01693 0.91153 0.86508 0.88669 0.86231 0.90926 0.87472 0.96325 0.98531 0.92439 0.87511 0.86305 0.90219 0.91711 0.82558 0.81414 0.86456 0.91098 0.90953 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 14.32 67.77 0.97 -3.06 16 2 C -0.18 -4.59 9.74 25.64 0.25 -4.34 16 3 C 0.13 4.03 5.65 85.63 0.48 4.52 16 4 N -0.60 -24.98 2.44 -830.49 -2.03 -27.01 16 5 C 0.26 14.28 5.16 85.64 0.44 14.73 16 6 C -0.54 -31.37 9.39 25.60 0.24 -31.13 16 7 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 8 C 0.01 0.44 5.46 84.65 0.46 0.90 16 9 N -0.93 -56.50 13.29 21.44 0.28 -56.22 16 10 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 11 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 14 C 0.50 19.75 7.67 87.66 0.67 20.42 16 15 O -0.60 -30.05 15.56 -3.04 -0.05 -30.10 16 16 C -0.12 -3.03 4.23 29.85 0.13 -2.91 16 17 C -0.06 -1.36 4.63 29.85 0.14 -1.22 16 18 C -0.09 -1.73 5.13 -19.85 -0.10 -1.83 16 19 C -0.08 -1.21 9.69 22.26 0.22 -0.99 16 20 C -0.17 -2.48 9.04 22.36 0.20 -2.28 16 21 C 0.08 1.66 6.69 22.53 0.15 1.81 16 22 O -0.34 -6.47 10.36 -92.97 -0.96 -7.44 16 23 C 0.02 0.14 9.81 113.37 1.11 1.25 16 24 C 0.04 0.97 7.31 22.45 0.16 1.14 16 25 F -0.15 -4.03 17.11 44.97 0.77 -3.26 16 26 C -0.12 -2.52 9.67 22.29 0.22 -2.30 16 27 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.09 2.26 7.84 -2.91 -0.02 2.24 16 29 H 0.12 2.66 7.83 -2.91 -0.02 2.64 16 30 H 0.07 2.40 7.72 -2.39 -0.02 2.38 16 31 H 0.11 2.53 6.44 -2.39 -0.02 2.52 16 32 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 33 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.11 2.39 7.40 -2.39 -0.02 2.37 16 36 H 0.12 2.32 7.77 -2.38 -0.02 2.30 16 37 H 0.08 2.01 8.04 -2.39 -0.02 1.99 16 38 H 0.06 1.83 8.04 -2.39 -0.02 1.81 16 39 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.17 1.32 6.30 -2.91 -0.02 1.30 16 41 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 0.42 7.67 -2.39 -0.02 0.40 16 43 H 0.07 0.42 7.65 -2.39 -0.02 0.40 16 44 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -77.78 379.87 6.78 -71.00 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.99 Total: 11.14 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 5.74 Total: -5.31 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -1.74 Total: -83.22 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -1.01 Total: -37.53 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.77 Total: -3.26 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -77.78 6.78 -71.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292430133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.796 kcal (2) G-P(sol) polarization free energy of solvation -77.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds