Wall clock time and date at job start Tue Mar 31 2020 13:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35890 * 116.99845 * 2 1 4 4 C 1.38808 * 120.02076 * 359.97438 * 3 2 1 5 5 C 1.38172 * 120.09329 * 180.02562 * 4 3 2 6 6 C 1.38155 * 120.13095 * 0.03839 * 5 4 3 7 7 C 1.38927 * 120.03481 * 359.96224 * 6 5 4 8 8 N 1.39673 * 120.04858 * 180.02562 * 7 6 5 9 9 C 1.46497 * 119.99671 * 359.97438 * 8 7 6 10 10 C 1.50703 * 109.47017 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99611 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00144 * 179.97438 * 10 9 8 13 13 N 1.40104 * 120.00020 * 180.02562 * 12 10 9 14 14 C 1.34780 * 119.99953 * 180.02562 * 13 12 10 15 15 O 1.21278 * 119.99947 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99723 * 179.97438 * 14 13 12 17 17 C 1.53008 * 109.46807 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46807 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00083 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99653 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99918 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99989 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47289 * 60.00157 * 22 20 18 24 24 H 1.48507 * 109.47345 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47037 * 299.99803 * 22 20 18 26 26 C 1.38584 * 120.01579 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46825 * 60.00336 * 1 2 3 28 28 H 1.09005 * 109.47170 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47455 * 299.99743 * 1 2 3 30 30 H 1.07998 * 119.95560 * 0.02562 * 4 3 2 31 31 H 1.08009 * 119.93663 * 180.02562 * 5 4 3 32 32 H 1.08004 * 119.98159 * 179.97438 * 6 5 4 33 33 H 0.96996 * 119.99510 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.47313 * 299.99963 * 9 8 7 35 35 H 1.09001 * 109.46795 * 60.00447 * 9 8 7 36 36 H 0.96997 * 119.99908 * 359.97438 * 12 10 9 37 37 H 0.96997 * 120.00072 * 359.97438 * 13 12 10 38 38 H 1.08999 * 109.46987 * 299.99362 * 16 14 13 39 39 H 1.09001 * 109.47389 * 60.00010 * 16 14 13 40 40 H 1.09004 * 109.46968 * 300.00082 * 17 16 14 41 41 H 1.08993 * 109.47070 * 59.99709 * 17 16 14 42 42 H 0.97010 * 119.99445 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.06261 * 0.25678 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2903 2.3752 -0.0005 5 6 1.9160 3.6071 -0.0011 6 6 3.2954 3.6844 -0.0019 7 6 4.0569 2.5224 -0.0014 8 7 5.4515 2.6002 -0.0016 9 6 6.1121 3.9077 -0.0030 10 6 7.6068 3.7153 -0.0024 11 8 8.0741 2.5961 -0.0014 12 7 8.4242 4.7868 -0.0040 13 7 9.8138 4.6079 -0.0040 14 6 10.6312 5.6796 -0.0050 15 8 10.1639 6.7987 -0.0065 16 6 12.1258 5.4871 -0.0044 17 6 12.8159 6.8527 -0.0065 18 6 14.3105 6.6602 -0.0065 19 1 14.7266 5.6636 -0.0056 20 6 15.1467 7.7564 -0.0088 21 7 14.6399 8.9701 -0.0105 22 14 16.9994 7.5179 -0.0081 23 1 17.4011 6.7579 -1.2189 24 1 17.6692 8.8434 -0.0115 25 1 17.4008 6.7631 1.2061 26 6 3.4298 1.2838 0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2118 2.3182 -0.0005 31 1 1.3256 4.5116 -0.0011 32 1 3.7820 4.6486 -0.0027 33 1 5.9824 1.7884 -0.0009 34 1 5.8173 4.4629 -0.8935 35 1 5.8175 4.4646 0.8865 36 1 8.0504 5.6819 -0.0059 37 1 10.1875 3.7129 -0.0024 38 1 12.4203 4.9322 0.8864 39 1 12.4208 4.9300 -0.8937 40 1 12.5213 7.4073 -0.8975 41 1 12.5209 7.4102 0.8824 42 1 15.2283 9.7413 -0.0125 43 1 4.0193 0.3788 -0.0032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292600175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:35 Heat of formation + Delta-G solvation = -53.182640 kcal Electronic energy + Delta-G solvation = -24810.706917 eV Core-core repulsion = 20857.484630 eV Total energy + Delta-G solvation = -3953.222287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66064 -40.27421 -39.05940 -38.15393 -35.56524 -35.04833 -33.58546 -32.08363 -31.25524 -30.66398 -29.52312 -27.86448 -26.70969 -25.53810 -23.12354 -22.21903 -21.80953 -21.26267 -19.97040 -18.74955 -17.95047 -17.70691 -16.91075 -16.55574 -16.23837 -16.12338 -16.04609 -15.84373 -15.30804 -15.12642 -15.11044 -14.49902 -14.06262 -13.99295 -13.79551 -13.53638 -13.44708 -12.94020 -12.62191 -12.58520 -12.27204 -11.93908 -11.62162 -11.29261 -11.27647 -11.22020 -10.95535 -10.70346 -10.55209 -10.38693 -10.07958 -9.85632 -9.47713 -9.19165 -8.64337 -8.42674 -8.35250 -7.82233 -6.02788 -4.07773 1.17074 1.28180 1.68381 2.06740 2.73926 2.96541 3.25762 3.31491 3.36478 3.38029 3.55888 3.79508 4.38899 4.48080 4.50620 4.71440 4.74844 4.76337 4.82151 4.82425 4.92833 5.03008 5.08758 5.27018 5.28625 5.32666 5.58228 5.88668 6.00366 6.04806 6.05456 6.17731 6.25382 6.52834 6.59587 6.75900 6.89105 7.09750 7.35412 7.54713 7.65293 7.73375 7.73855 7.97327 8.28481 8.51351 8.99506 9.56409 11.07986 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.054194 B = 0.001532 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.535059 B =18275.831591 C =18761.314849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.171 3.829 4 C -0.266 4.266 5 C -0.033 4.033 6 C -0.234 4.234 7 C 0.256 3.744 8 N -0.731 5.731 9 C 0.117 3.883 10 C 0.506 3.494 11 O -0.541 6.541 12 N -0.516 5.516 13 N -0.536 5.536 14 C 0.513 3.487 15 O -0.531 6.531 16 C -0.119 4.119 17 C 0.038 3.962 18 C -0.531 4.531 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.227 4.227 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.413 0.587 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.433 0.567 37 H 0.430 0.570 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.262 0.738 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.006 -14.614 0.018 32.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.125 3.875 4 C -0.286 4.286 5 C -0.052 4.052 6 C -0.257 4.257 7 C 0.152 3.848 8 N -0.364 5.364 9 C -0.013 4.013 10 C 0.291 3.709 11 O -0.417 6.417 12 N -0.262 5.262 13 N -0.288 5.288 14 C 0.302 3.698 15 O -0.405 6.405 16 C -0.160 4.160 17 C 0.000 4.000 18 C -0.569 4.569 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.722 3.278 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.251 4.251 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.252 0.748 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.275 0.725 37 H 0.272 0.728 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -28.767 -14.376 0.018 32.160 hybrid contribution 0.937 -0.173 -0.002 0.953 sum -27.830 -14.549 0.015 31.404 Atomic orbital electron populations 1.23047 0.78299 1.03806 1.01462 1.86053 1.21451 1.27235 1.88460 1.18615 0.91495 0.83987 0.93429 1.20985 0.99734 0.92273 1.15647 1.20657 0.93780 0.96882 0.93885 1.20594 0.93997 0.96784 1.14308 1.17340 0.82754 0.93075 0.91610 1.44299 1.02754 1.07380 1.81953 1.20891 0.88026 0.87881 1.04503 1.20615 0.88675 0.84302 0.77308 1.90730 1.76732 1.23522 1.50717 1.44677 0.96332 1.10575 1.74593 1.45622 0.92720 1.11786 1.78718 1.22155 0.89967 0.83148 0.74498 1.90697 1.77227 1.23752 1.48780 1.21920 0.85517 1.05197 1.03399 1.18942 0.93826 0.88320 0.98886 1.21143 0.91072 0.92726 1.51941 0.92464 1.25009 0.98917 0.95203 0.95115 1.69985 1.35200 0.97717 1.49839 0.86623 0.85248 0.77278 0.78615 1.20200 1.21253 1.20192 1.19640 0.91815 0.96791 1.16805 0.92585 0.88366 0.92577 0.85900 0.85789 0.85826 0.74785 0.88366 0.88374 0.72509 0.72848 0.89406 0.89408 0.95587 0.95583 0.92811 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.88 10.49 -19.39 -0.20 -3.08 16 3 C 0.17 1.62 6.68 -39.24 -0.26 1.36 16 4 C -0.27 -2.13 9.04 -39.39 -0.36 -2.48 16 5 C -0.03 -0.25 10.03 -39.64 -0.40 -0.65 16 6 C -0.23 -1.89 9.31 -39.36 -0.37 -2.25 16 7 C 0.26 2.35 6.65 -83.81 -0.56 1.80 16 8 N -0.73 -6.43 5.70 -59.82 -0.34 -6.77 16 9 C 0.12 0.85 5.39 -5.19 -0.03 0.83 16 10 C 0.51 5.35 8.02 -10.99 -0.09 5.26 16 11 O -0.54 -7.34 15.51 5.55 0.09 -7.26 16 12 N -0.52 -5.94 6.26 31.22 0.20 -5.75 16 13 N -0.54 -7.41 6.26 31.22 0.20 -7.22 16 14 C 0.51 9.03 7.95 -10.98 -0.09 8.94 16 15 O -0.53 -11.18 15.82 5.56 0.09 -11.10 16 16 C -0.12 -2.23 5.64 -27.88 -0.16 -2.39 16 17 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 18 C -0.53 -14.51 9.11 -34.44 -0.31 -14.83 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 22 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.23 -2.22 9.83 -39.23 -0.39 -2.61 16 27 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 30 H 0.12 0.73 6.29 -52.49 -0.33 0.40 16 31 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 32 H 0.12 0.77 6.73 -52.48 -0.35 0.42 16 33 H 0.41 3.98 7.45 -40.82 -0.30 3.68 16 34 H 0.10 0.55 7.95 -51.93 -0.41 0.13 16 35 H 0.10 0.55 7.95 -51.93 -0.41 0.13 16 36 H 0.43 4.45 8.00 -182.60 -1.46 2.99 16 37 H 0.43 5.34 8.00 -182.60 -1.46 3.88 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -35.17 371.83 -8.91 -44.08 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -8.03 Total: 4.68 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.22 Total: -3.45 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.79 Total: -45.64 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.03 Total: -21.43 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.17 -8.91 -44.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292600175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.104 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds