Wall clock time and date at job start Tue Mar 31 2020 13:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35890 * 116.99845 * 2 1 4 4 C 1.38808 * 120.02076 * 359.97438 * 3 2 1 5 5 C 1.38172 * 120.09329 * 180.02562 * 4 3 2 6 6 C 1.38155 * 120.13095 * 0.03839 * 5 4 3 7 7 C 1.38927 * 120.03481 * 359.96224 * 6 5 4 8 8 N 1.39673 * 120.04858 * 180.02562 * 7 6 5 9 9 C 1.46497 * 119.99671 * 359.97438 * 8 7 6 10 10 C 1.50703 * 109.47017 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99611 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00144 * 179.97438 * 10 9 8 13 13 N 1.40104 * 120.00020 * 180.02562 * 12 10 9 14 14 C 1.34780 * 119.99953 * 180.02562 * 13 12 10 15 15 O 1.21278 * 119.99947 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99723 * 179.97438 * 14 13 12 17 17 C 1.53008 * 109.46807 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46807 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00083 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99653 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99918 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99989 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47289 * 60.00157 * 22 20 18 24 24 H 1.48507 * 109.47345 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47037 * 299.99803 * 22 20 18 26 26 C 1.38584 * 120.01579 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46825 * 60.00336 * 1 2 3 28 28 H 1.09005 * 109.47170 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47455 * 299.99743 * 1 2 3 30 30 H 1.07998 * 119.95560 * 0.02562 * 4 3 2 31 31 H 1.08009 * 119.93663 * 180.02562 * 5 4 3 32 32 H 1.08004 * 119.98159 * 179.97438 * 6 5 4 33 33 H 0.96996 * 119.99510 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.47313 * 299.99963 * 9 8 7 35 35 H 1.09001 * 109.46795 * 60.00447 * 9 8 7 36 36 H 0.96997 * 119.99908 * 359.97438 * 12 10 9 37 37 H 0.96997 * 120.00072 * 359.97438 * 13 12 10 38 38 H 1.08999 * 109.46987 * 299.99362 * 16 14 13 39 39 H 1.09001 * 109.47389 * 60.00010 * 16 14 13 40 40 H 1.09004 * 109.46968 * 300.00082 * 17 16 14 41 41 H 1.08993 * 109.47070 * 59.99709 * 17 16 14 42 42 H 0.97010 * 119.99445 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.06261 * 0.25678 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2903 2.3752 -0.0005 5 6 1.9160 3.6071 -0.0011 6 6 3.2954 3.6844 -0.0019 7 6 4.0569 2.5224 -0.0014 8 7 5.4515 2.6002 -0.0016 9 6 6.1121 3.9077 -0.0030 10 6 7.6068 3.7153 -0.0024 11 8 8.0741 2.5961 -0.0014 12 7 8.4242 4.7868 -0.0040 13 7 9.8138 4.6079 -0.0040 14 6 10.6312 5.6796 -0.0050 15 8 10.1639 6.7987 -0.0065 16 6 12.1258 5.4871 -0.0044 17 6 12.8159 6.8527 -0.0065 18 6 14.3105 6.6602 -0.0065 19 1 14.7266 5.6636 -0.0056 20 6 15.1467 7.7564 -0.0088 21 7 14.6399 8.9701 -0.0105 22 14 16.9994 7.5179 -0.0081 23 1 17.4011 6.7579 -1.2189 24 1 17.6692 8.8434 -0.0115 25 1 17.4008 6.7631 1.2061 26 6 3.4298 1.2838 0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2118 2.3182 -0.0005 31 1 1.3256 4.5116 -0.0011 32 1 3.7820 4.6486 -0.0027 33 1 5.9824 1.7884 -0.0009 34 1 5.8173 4.4629 -0.8935 35 1 5.8175 4.4646 0.8865 36 1 8.0504 5.6819 -0.0059 37 1 10.1875 3.7129 -0.0024 38 1 12.4203 4.9322 0.8864 39 1 12.4208 4.9300 -0.8937 40 1 12.5213 7.4073 -0.8975 41 1 12.5209 7.4102 0.8824 42 1 15.2283 9.7413 -0.0125 43 1 4.0193 0.3788 -0.0032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292600175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:34 Heat of formation + Delta-G solvation = -79.630728 kcal Electronic energy + Delta-G solvation = -24811.853792 eV Core-core repulsion = 20857.484630 eV Total energy + Delta-G solvation = -3954.369163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60285 -41.00191 -40.25690 -38.82098 -36.64419 -35.78572 -35.55733 -33.47768 -32.44963 -31.65190 -30.24696 -28.42080 -27.81341 -26.91749 -23.98262 -23.65346 -22.72467 -22.11690 -21.24567 -19.44961 -19.15627 -18.74336 -18.30734 -17.50000 -17.12860 -17.03918 -16.70192 -16.60449 -16.46819 -16.40290 -16.25503 -15.79052 -15.14450 -14.83442 -14.71887 -14.39593 -14.28738 -14.22823 -14.03535 -13.43257 -13.26381 -13.03600 -12.80066 -12.52968 -12.48115 -12.47288 -12.11170 -11.92422 -11.76802 -11.67862 -11.55227 -11.32944 -10.98105 -10.96522 -10.53937 -9.52485 -9.26587 -8.43800 -8.17015 -6.30138 0.55594 0.66497 0.66704 1.13168 1.44698 1.47832 1.55525 1.63814 2.13533 2.43649 2.65851 2.89973 2.94606 3.16852 3.45374 3.96123 3.98248 4.22268 4.28885 4.30286 4.30561 4.38307 4.43609 4.45941 4.51254 4.52439 4.68017 4.76760 4.96050 5.01771 5.29128 5.43153 5.46827 5.52597 5.57398 5.63735 5.64347 5.70553 5.86115 6.17865 6.25813 6.41091 6.52495 6.66708 6.73664 6.88375 7.25570 7.39996 8.95035 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.054194 B = 0.001532 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.535059 B =18275.831591 C =18761.314849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.342 6.342 3 C 0.155 3.845 4 C -0.270 4.270 5 C -0.035 4.035 6 C -0.240 4.240 7 C 0.248 3.752 8 N -0.737 5.737 9 C 0.122 3.878 10 C 0.512 3.488 11 O -0.570 6.570 12 N -0.514 5.514 13 N -0.523 5.523 14 C 0.520 3.480 15 O -0.573 6.573 16 C -0.110 4.110 17 C 0.042 3.958 18 C -0.545 4.545 19 H 0.076 0.924 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.264 1.264 24 H -0.288 1.288 25 H -0.264 1.264 26 C -0.251 4.251 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.065 0.935 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.407 0.593 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.440 0.560 37 H 0.439 0.561 38 H 0.111 0.889 39 H 0.111 0.889 40 H -0.011 1.011 41 H -0.011 1.011 42 H 0.263 0.737 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.761 -15.538 0.021 33.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.109 3.891 4 C -0.291 4.291 5 C -0.054 4.054 6 C -0.262 4.262 7 C 0.144 3.856 8 N -0.369 5.369 9 C -0.007 4.007 10 C 0.299 3.701 11 O -0.447 6.447 12 N -0.262 5.262 13 N -0.273 5.273 14 C 0.309 3.691 15 O -0.450 6.450 16 C -0.151 4.151 17 C 0.004 3.996 18 C -0.583 4.583 19 H 0.094 0.906 20 C -0.201 4.201 21 N -0.575 5.575 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.214 1.214 25 H -0.189 1.189 26 C -0.274 4.274 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.084 0.916 30 H 0.159 0.841 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.244 0.756 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.283 0.717 37 H 0.282 0.718 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.071 0.929 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -29.552 -15.355 0.020 33.303 hybrid contribution 1.031 0.041 -0.003 1.032 sum -28.521 -15.314 0.017 32.372 Atomic orbital electron populations 1.23311 0.76399 1.05295 1.02346 1.86019 1.23545 1.27458 1.88518 1.18832 0.91644 0.84730 0.93858 1.21262 1.00741 0.92004 1.15063 1.21029 0.93928 0.97660 0.92762 1.20895 0.94386 0.97146 1.13794 1.17455 0.82859 0.93310 0.91986 1.44351 1.02709 1.07607 1.82259 1.21065 0.85063 0.87697 1.06851 1.21224 0.89745 0.83358 0.75746 1.90726 1.77461 1.24686 1.51861 1.44847 0.94837 1.11475 1.75026 1.45159 0.94158 1.11125 1.76848 1.21676 0.89913 0.83120 0.74413 1.90686 1.77764 1.25442 1.51093 1.21641 0.86280 1.01493 1.05703 1.18717 0.94168 0.91332 0.95358 1.21673 0.92093 0.93568 1.50942 0.90605 1.26047 1.04514 0.94830 0.94667 1.70154 1.37160 0.98796 1.51358 0.85433 0.78559 0.77244 0.79365 1.18879 1.21417 1.18870 1.19779 0.92396 0.97054 1.18214 0.91652 0.86722 0.91644 0.84059 0.83202 0.83771 0.75571 0.85853 0.85864 0.71685 0.71755 0.87052 0.87059 0.99265 0.99257 0.92878 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.14 10.49 -92.31 -0.97 -7.10 16 3 C 0.16 2.90 6.68 22.49 0.15 3.05 16 4 C -0.27 -3.91 9.04 22.39 0.20 -3.70 16 5 C -0.04 -0.44 10.03 22.23 0.22 -0.22 16 6 C -0.24 -3.32 9.31 22.42 0.21 -3.11 16 7 C 0.25 4.31 6.65 38.20 0.25 4.56 16 8 N -0.74 -12.10 5.70 -343.18 -1.96 -14.06 16 9 C 0.12 1.49 5.39 85.63 0.46 1.95 16 10 C 0.51 9.95 8.02 87.66 0.70 10.65 16 11 O -0.57 -14.80 15.51 -3.04 -0.05 -14.85 16 12 N -0.51 -11.03 6.26 -173.53 -1.09 -12.11 16 13 N -0.52 -13.73 6.26 -173.53 -1.09 -14.82 16 14 C 0.52 18.06 7.95 87.66 0.70 18.76 16 15 O -0.57 -24.52 15.82 -3.02 -0.05 -24.57 16 16 C -0.11 -4.05 5.64 29.85 0.17 -3.88 16 17 C 0.04 2.20 4.26 29.85 0.13 2.33 16 18 C -0.54 -29.81 9.11 25.60 0.23 -29.58 16 19 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 20 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 21 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 22 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 24 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 26 C -0.25 -4.98 9.83 22.50 0.22 -4.76 16 27 H 0.06 0.44 7.66 -2.38 -0.02 0.42 16 28 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.06 0.44 7.66 -2.39 -0.02 0.42 16 30 H 0.14 1.39 6.29 -2.91 -0.02 1.37 16 31 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.14 1.30 6.73 -2.91 -0.02 1.28 16 33 H 0.41 7.74 7.45 -92.71 -0.69 7.05 16 34 H 0.12 0.97 7.95 -2.39 -0.02 0.95 16 35 H 0.12 0.97 7.95 -2.39 -0.02 0.95 16 36 H 0.44 8.36 8.00 -213.32 -1.71 6.65 16 37 H 0.44 10.12 8.00 -213.32 -1.71 8.41 16 38 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 40 H -0.01 -0.65 8.10 -2.38 -0.02 -0.67 16 41 H -0.01 -0.65 8.10 -2.39 -0.02 -0.67 16 42 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 43 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -78.71 371.83 -0.69 -79.40 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -3.03 Total: 22.39 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 5.22 Total: -2.35 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -3.84 Total: -98.20 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -1.06 Total: -46.53 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -78.71 -0.69 -79.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292600175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.228 kcal (2) G-P(sol) polarization free energy of solvation -78.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds