Wall clock time and date at job start Tue Mar 31 2020 13:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50703 * 119.99942 * 2 1 4 4 N 1.46498 * 109.47124 * 125.00220 * 3 2 1 5 5 C 1.46500 * 120.00176 * 269.99865 * 4 3 2 6 6 C 1.50697 * 109.46801 * 270.00152 * 5 4 3 7 7 H 1.07995 * 120.00567 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99724 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99834 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00264 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46752 * 89.99899 * 10 8 6 12 12 H 1.48497 * 109.47187 * 210.00035 * 10 8 6 13 13 H 1.48501 * 109.47005 * 330.00308 * 10 8 6 14 14 C 1.34779 * 119.99968 * 89.99737 * 4 3 2 15 15 O 1.21605 * 119.99593 * 180.02562 * 14 4 3 16 16 N 1.34772 * 120.00287 * 359.97438 * 14 4 3 17 17 C 1.40788 * 119.99909 * 179.97438 * 16 14 4 18 18 C 1.40132 * 126.11570 * 359.97438 * 17 16 14 19 19 C 1.38021 * 107.10093 * 179.97438 * 18 17 16 20 20 C 1.46470 * 126.18028 * 180.02562 * 19 18 17 21 21 O 1.21633 * 120.00266 * 359.97438 * 20 19 18 22 22 O 1.34898 * 120.00053 * 179.97438 * 20 19 18 23 23 C 1.45204 * 117.00271 * 179.97438 * 22 20 19 24 24 N 1.37654 * 107.63953 * 0.02562 * 19 18 17 25 25 C 1.46499 * 125.65383 * 180.02562 * 24 19 18 26 26 C 1.35834 * 108.69557 * 0.25945 * 24 19 18 27 27 H 1.08000 * 120.00275 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00308 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00209 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47002 * 4.99727 * 3 2 1 31 31 H 1.09005 * 109.46712 * 244.99648 * 3 2 1 32 32 H 1.09003 * 109.46706 * 29.99476 * 5 4 3 33 33 H 1.08999 * 109.47636 * 149.99784 * 5 4 3 34 34 H 0.97002 * 119.99958 * 179.97438 * 9 8 6 35 35 H 0.97000 * 119.99929 * 0.02562 * 16 14 4 36 36 H 1.08003 * 126.45347 * 359.97438 * 18 17 16 37 37 H 1.09000 * 109.46441 * 60.00039 * 23 22 20 38 38 H 1.08995 * 109.47233 * 179.97438 * 23 22 20 39 39 H 1.08999 * 109.47284 * 300.00448 * 23 22 20 40 40 H 1.09002 * 109.47391 * 89.99557 * 25 24 19 41 41 H 1.09001 * 109.46813 * 329.99614 * 25 24 19 42 42 H 1.09004 * 109.47041 * 209.99741 * 25 24 19 43 43 H 1.07996 * 125.60591 * 179.71399 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4803 7 1 3.3040 3.8369 1.6367 8 6 2.5185 4.0667 3.6082 9 7 2.7680 5.3571 3.6568 10 14 1.7227 3.2137 5.0671 11 1 2.7781 2.7227 5.9893 12 1 0.8462 4.1742 5.7844 13 1 0.9114 2.0662 4.5874 14 6 4.2496 0.8661 0.9823 15 8 5.0216 0.8880 1.9216 16 7 4.6496 0.3753 -0.2074 17 6 5.9617 -0.1108 -0.3632 18 6 6.9528 -0.1450 0.6268 19 6 8.0808 -0.6957 0.0530 20 6 9.3650 -0.9262 0.7188 21 8 9.5072 -0.6221 1.8879 22 8 10.3900 -1.4758 0.0354 23 6 11.6332 -1.6747 0.7588 24 7 7.7810 -0.9891 -1.2581 25 6 8.6982 -1.5893 -2.2300 26 6 6.4954 -0.6251 -1.5027 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4887 1.6967 2.5459 33 1 3.0989 1.3603 3.2260 34 1 2.5385 5.8659 4.4501 35 1 4.0336 0.3575 -0.9566 36 1 6.8529 0.1955 1.6469 37 1 11.4581 -2.3367 1.6068 38 1 12.3722 -2.1231 0.0948 39 1 12.0023 -0.7140 1.1179 40 1 8.6111 -2.6751 -2.1894 41 1 9.7212 -1.2977 -1.9923 42 1 8.4447 -1.2416 -3.2316 43 1 5.9810 -0.7298 -2.4465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292900175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:06 Heat of formation + Delta-G solvation = -17.038223 kcal Electronic energy + Delta-G solvation = -26912.187028 eV Core-core repulsion = 22960.532080 eV Total energy + Delta-G solvation = -3951.654948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.52740 -40.02833 -39.34398 -36.48322 -35.92970 -34.63400 -33.09753 -32.30226 -31.68965 -29.75740 -28.18237 -27.51583 -26.24686 -25.43145 -23.46229 -22.49772 -20.57506 -20.30798 -20.01535 -18.87711 -18.30121 -17.18266 -16.93277 -16.82788 -16.57034 -15.81702 -15.55384 -15.34091 -14.91568 -14.58850 -14.35160 -13.93868 -13.86257 -13.45914 -13.37015 -13.15308 -12.91213 -12.69381 -12.45927 -12.28134 -12.18427 -12.07759 -11.81945 -11.57433 -11.24916 -10.96573 -10.90912 -10.71109 -10.48845 -10.36593 -10.06525 -9.52342 -9.28659 -9.20218 -8.52364 -8.42403 -7.86920 -7.37687 -6.02450 -4.00726 1.21941 2.31964 2.49885 2.61873 2.64543 3.21751 3.32882 3.37151 3.41832 3.44375 4.02796 4.41971 4.46053 4.63977 4.69225 4.89168 4.93996 4.99551 5.01962 5.12435 5.26807 5.30077 5.30904 5.34480 5.42511 5.48433 5.81163 5.91518 6.01615 6.09973 6.21753 6.50035 6.65848 6.70350 6.77429 6.83545 6.97268 7.08901 7.31084 7.35180 7.57528 7.69753 7.73222 8.53657 8.54905 9.01284 9.25369 9.58232 11.11011 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.003418 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.372807 B = 8189.372204 C = 9703.776805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.172 4.172 3 C 0.137 3.863 4 N -0.600 5.600 5 C 0.233 3.767 6 C -0.528 4.528 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.898 5.898 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.265 1.265 14 C 0.704 3.296 15 O -0.565 6.565 16 N -0.671 5.671 17 C 0.091 3.909 18 C -0.086 4.086 19 C -0.045 4.045 20 C 0.537 3.463 21 O -0.492 6.492 22 O -0.367 6.367 23 C 0.037 3.963 24 N -0.422 5.422 25 C 0.074 3.926 26 C -0.015 4.015 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.401 0.599 36 H 0.180 0.820 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.398 -17.041 -16.255 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.192 4.192 3 C 0.013 3.987 4 N -0.334 5.334 5 C 0.112 3.888 6 C -0.566 4.566 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.190 1.190 14 C 0.406 3.594 15 O -0.440 6.440 16 N -0.320 5.320 17 C -0.010 4.010 18 C -0.115 4.115 19 C -0.155 4.155 20 C 0.383 3.617 21 O -0.379 6.379 22 O -0.285 6.285 23 C -0.057 4.057 24 N -0.099 5.099 25 C -0.067 4.067 26 C -0.152 4.152 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.197 0.803 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 9.236 -16.879 -15.232 24.540 hybrid contribution -0.669 -0.307 0.403 0.839 sum 8.566 -17.186 -14.829 24.262 Atomic orbital electron populations 1.23842 0.95835 1.01855 1.00305 1.23491 0.96512 0.99067 1.00119 1.20546 0.93218 0.95607 0.89322 1.47164 1.09091 1.63601 1.13542 1.19587 0.94681 0.94938 0.79575 1.21362 1.40949 0.91220 1.03111 0.90721 1.24837 0.95343 0.94713 0.98073 1.69899 1.47885 1.06626 1.29252 0.86875 0.79875 0.79626 0.83464 1.19839 1.21171 1.19023 1.15799 0.82884 0.78528 0.82219 1.90834 1.52352 1.61527 1.39334 1.42242 1.10916 1.65624 1.13239 1.16641 0.85926 1.04351 0.94093 1.21878 0.88458 0.99723 1.01473 1.19283 0.94063 1.16812 0.85336 1.19775 0.82666 0.74570 0.84725 1.90945 1.82348 1.48347 1.16253 1.86574 1.22342 1.75023 1.44517 1.23248 0.82518 1.02346 0.97577 1.43601 1.10426 1.47025 1.08897 1.22185 0.94183 0.98878 0.91429 1.21211 0.85369 1.09284 0.99359 0.88742 0.88164 0.87659 0.88858 0.91155 0.95100 0.94363 0.92625 0.76271 0.80299 0.91792 0.88195 0.91727 0.90744 0.88542 0.89766 0.81076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 14.32 29.02 0.42 -1.70 16 2 C -0.17 -2.24 9.85 -36.02 -0.35 -2.59 16 3 C 0.14 2.10 5.61 -5.19 -0.03 2.07 16 4 N -0.60 -12.35 2.44 -182.18 -0.44 -12.80 16 5 C 0.23 5.75 4.23 -5.19 -0.02 5.72 16 6 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16 7 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 10 Si 0.87 21.92 27.47 -169.99 -4.67 17.25 16 11 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 14 C 0.70 14.86 8.25 -86.92 -0.72 14.15 16 15 O -0.56 -14.37 13.10 5.27 0.07 -14.30 16 16 N -0.67 -10.72 5.34 -14.39 -0.08 -10.79 16 17 C 0.09 1.43 6.91 -83.85 -0.58 0.85 16 18 C -0.09 -1.58 9.44 -38.95 -0.37 -1.94 16 19 C -0.05 -0.69 6.88 -82.02 -0.56 -1.25 16 20 C 0.54 8.09 7.92 34.05 0.27 8.36 16 21 O -0.49 -9.03 16.68 -19.37 -0.32 -9.35 16 22 O -0.37 -4.08 7.98 -41.03 -0.33 -4.40 16 23 C 0.04 0.30 10.57 101.05 1.07 1.37 16 24 N -0.42 -4.85 3.17 -120.04 -0.38 -5.23 16 25 C 0.07 0.51 10.56 59.85 0.63 1.15 16 26 C -0.02 -0.17 11.42 -16.61 -0.19 -0.36 16 27 H 0.09 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.10 1.16 7.84 -52.49 -0.41 0.74 16 29 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.09 1.50 7.72 -51.93 -0.40 1.09 16 31 H 0.07 0.87 6.36 -51.93 -0.33 0.54 16 32 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 33 H 0.04 1.02 6.85 -51.93 -0.36 0.66 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.40 4.89 6.56 -40.82 -0.27 4.62 16 36 H 0.18 3.94 5.97 -52.48 -0.31 3.62 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.68 6.14 -51.93 -0.32 0.36 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -37.94 368.04 -6.45 -44.39 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.74 Total: 4.75 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: -0.88 Total: 12.22 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.13 Total: -56.10 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.58 Total: -28.06 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.94 -6.45 -44.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292900175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.351 kcal (2) G-P(sol) polarization free energy of solvation -37.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds