Wall clock time and date at job start Tue Mar 31 2020 13:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50703 * 119.99942 * 2 1 4 4 N 1.46498 * 109.47124 * 125.00220 * 3 2 1 5 5 C 1.46500 * 120.00176 * 269.99865 * 4 3 2 6 6 C 1.50697 * 109.46801 * 270.00152 * 5 4 3 7 7 H 1.07995 * 120.00567 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99724 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99834 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00264 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46752 * 89.99899 * 10 8 6 12 12 H 1.48497 * 109.47187 * 210.00035 * 10 8 6 13 13 H 1.48501 * 109.47005 * 330.00308 * 10 8 6 14 14 C 1.34779 * 119.99968 * 89.99737 * 4 3 2 15 15 O 1.21605 * 119.99593 * 180.02562 * 14 4 3 16 16 N 1.34772 * 120.00287 * 359.97438 * 14 4 3 17 17 C 1.40788 * 119.99909 * 179.97438 * 16 14 4 18 18 C 1.40132 * 126.11570 * 359.97438 * 17 16 14 19 19 C 1.38021 * 107.10093 * 179.97438 * 18 17 16 20 20 C 1.46470 * 126.18028 * 180.02562 * 19 18 17 21 21 O 1.21633 * 120.00266 * 359.97438 * 20 19 18 22 22 O 1.34898 * 120.00053 * 179.97438 * 20 19 18 23 23 C 1.45204 * 117.00271 * 179.97438 * 22 20 19 24 24 N 1.37654 * 107.63953 * 0.02562 * 19 18 17 25 25 C 1.46499 * 125.65383 * 180.02562 * 24 19 18 26 26 C 1.35834 * 108.69557 * 0.25945 * 24 19 18 27 27 H 1.08000 * 120.00275 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00308 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00209 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47002 * 4.99727 * 3 2 1 31 31 H 1.09005 * 109.46712 * 244.99648 * 3 2 1 32 32 H 1.09003 * 109.46706 * 29.99476 * 5 4 3 33 33 H 1.08999 * 109.47636 * 149.99784 * 5 4 3 34 34 H 0.97002 * 119.99958 * 179.97438 * 9 8 6 35 35 H 0.97000 * 119.99929 * 0.02562 * 16 14 4 36 36 H 1.08003 * 126.45347 * 359.97438 * 18 17 16 37 37 H 1.09000 * 109.46441 * 60.00039 * 23 22 20 38 38 H 1.08995 * 109.47233 * 179.97438 * 23 22 20 39 39 H 1.08999 * 109.47284 * 300.00448 * 23 22 20 40 40 H 1.09002 * 109.47391 * 89.99557 * 25 24 19 41 41 H 1.09001 * 109.46813 * 329.99614 * 25 24 19 42 42 H 1.09004 * 109.47041 * 209.99741 * 25 24 19 43 43 H 1.07996 * 125.60591 * 179.71399 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4803 7 1 3.3040 3.8369 1.6367 8 6 2.5185 4.0667 3.6082 9 7 2.7680 5.3571 3.6568 10 14 1.7227 3.2137 5.0671 11 1 2.7781 2.7227 5.9893 12 1 0.8462 4.1742 5.7844 13 1 0.9114 2.0662 4.5874 14 6 4.2496 0.8661 0.9823 15 8 5.0216 0.8880 1.9216 16 7 4.6496 0.3753 -0.2074 17 6 5.9617 -0.1108 -0.3632 18 6 6.9528 -0.1450 0.6268 19 6 8.0808 -0.6957 0.0530 20 6 9.3650 -0.9262 0.7188 21 8 9.5072 -0.6221 1.8879 22 8 10.3900 -1.4758 0.0354 23 6 11.6332 -1.6747 0.7588 24 7 7.7810 -0.9891 -1.2581 25 6 8.6982 -1.5893 -2.2300 26 6 6.4954 -0.6251 -1.5027 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4887 1.6967 2.5459 33 1 3.0989 1.3603 3.2260 34 1 2.5385 5.8659 4.4501 35 1 4.0336 0.3575 -0.9566 36 1 6.8529 0.1955 1.6469 37 1 11.4581 -2.3367 1.6068 38 1 12.3722 -2.1231 0.0948 39 1 12.0023 -0.7140 1.1179 40 1 8.6111 -2.6751 -2.1894 41 1 9.7212 -1.2977 -1.9923 42 1 8.4447 -1.2416 -3.2316 43 1 5.9810 -0.7298 -2.4465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292900175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:05 Heat of formation + Delta-G solvation = -43.845483 kcal Electronic energy + Delta-G solvation = -26913.349478 eV Core-core repulsion = 22960.532080 eV Total energy + Delta-G solvation = -3952.817398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.64105 -41.28102 -40.69819 -37.58535 -37.37438 -36.04617 -34.92141 -33.80077 -32.91685 -30.93013 -29.93203 -28.37393 -27.22956 -26.72813 -24.86902 -24.06279 -21.94336 -21.42960 -21.11616 -20.22586 -19.48158 -19.07288 -18.46644 -18.02240 -17.58793 -17.27685 -16.57171 -16.47979 -16.18762 -15.94811 -15.79899 -15.48107 -15.01087 -14.83684 -14.51188 -14.35342 -14.28690 -14.08676 -13.53573 -13.46580 -13.38438 -13.24024 -13.08867 -12.89380 -12.81168 -12.50106 -12.26398 -11.93074 -11.91368 -11.89356 -11.72359 -11.59275 -10.92375 -10.80625 -10.31476 -9.62054 -9.46517 -8.59138 -8.31681 -6.35892 0.08462 1.25796 1.34206 1.38681 1.44949 1.46268 1.50620 1.65537 1.96316 2.10406 2.32788 2.52079 3.02537 3.12040 3.70731 3.99840 4.05577 4.13197 4.22785 4.28900 4.30963 4.38125 4.39543 4.55231 4.65204 4.69713 4.73767 4.84967 4.87732 4.91291 4.97701 5.09861 5.18168 5.24645 5.48277 5.54130 5.62587 5.74609 5.92625 5.93818 6.11290 6.25209 6.30929 6.62333 6.65255 7.11161 7.25893 7.70362 8.85419 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.003418 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.372807 B = 8189.372204 C = 9703.776805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.184 4.184 3 C 0.132 3.868 4 N -0.607 5.607 5 C 0.245 3.755 6 C -0.533 4.533 7 H 0.029 0.971 8 C 0.011 3.989 9 N -0.946 5.946 10 Si 0.945 3.055 11 H -0.280 1.280 12 H -0.273 1.273 13 H -0.236 1.236 14 C 0.694 3.306 15 O -0.621 6.621 16 N -0.648 5.648 17 C 0.049 3.951 18 C -0.133 4.133 19 C -0.060 4.060 20 C 0.540 3.460 21 O -0.541 6.541 22 O -0.350 6.350 23 C 0.028 3.972 24 N -0.403 5.403 25 C 0.063 3.937 26 C 0.037 3.963 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.015 0.985 34 H 0.268 0.732 35 H 0.422 0.578 36 H 0.126 0.874 37 H 0.059 0.941 38 H 0.145 0.855 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 -20.092 -19.703 29.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.203 4.203 3 C 0.010 3.990 4 N -0.340 5.340 5 C 0.123 3.877 6 C -0.572 4.572 7 H 0.047 0.953 8 C -0.187 4.187 9 N -0.586 5.586 10 Si 0.768 3.232 11 H -0.206 1.206 12 H -0.198 1.198 13 H -0.159 1.159 14 C 0.396 3.604 15 O -0.501 6.501 16 N -0.299 5.299 17 C -0.050 4.050 18 C -0.162 4.162 19 C -0.171 4.171 20 C 0.387 3.613 21 O -0.431 6.431 22 O -0.266 6.266 23 C -0.065 4.065 24 N -0.078 5.078 25 C -0.075 4.075 26 C -0.102 4.102 27 H 0.136 0.864 28 H 0.119 0.881 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.262 0.738 36 H 0.143 0.857 37 H 0.078 0.922 38 H 0.163 0.837 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.141 0.859 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 8.456 -19.986 -18.812 28.720 hybrid contribution -0.280 0.626 1.285 1.456 sum 8.177 -19.360 -17.527 27.365 Atomic orbital electron populations 1.24074 0.95409 1.03020 0.97716 1.23289 0.96817 0.97871 1.02365 1.20814 0.92714 0.96936 0.88490 1.47098 1.09987 1.63291 1.13664 1.19181 0.95270 0.91794 0.81485 1.21593 1.40216 0.93555 1.01829 0.95304 1.25819 0.96064 0.95357 1.01424 1.70052 1.49571 1.08500 1.30494 0.85755 0.79019 0.79471 0.78938 1.20644 1.19811 1.15867 1.16082 0.82540 0.78650 0.83123 1.90826 1.53897 1.63691 1.41702 1.41785 1.11585 1.64526 1.11955 1.16897 0.85495 1.07287 0.95336 1.21523 0.91535 1.02707 1.00452 1.19041 0.93412 1.17503 0.87173 1.19864 0.83414 0.73871 0.84114 1.90917 1.83233 1.50614 1.18369 1.86570 1.22440 1.73807 1.43834 1.23621 0.81771 1.02336 0.98726 1.44007 1.11076 1.44790 1.07911 1.22651 0.93167 1.00017 0.91697 1.21969 0.84530 1.04337 0.99394 0.86439 0.88114 0.86751 0.89915 0.88332 0.92998 0.96645 0.92338 0.73849 0.85655 0.92218 0.83673 0.92404 0.88613 0.88688 0.85857 0.75172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 14.32 67.79 0.97 -2.37 16 2 C -0.18 -4.33 9.85 25.66 0.25 -4.08 16 3 C 0.13 3.93 5.61 85.63 0.48 4.41 16 4 N -0.61 -25.56 2.44 -848.55 -2.07 -27.63 16 5 C 0.25 12.43 4.23 85.63 0.36 12.79 16 6 C -0.53 -32.39 9.94 25.60 0.25 -32.14 16 7 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 8 C 0.01 0.68 5.47 84.66 0.46 1.14 16 9 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 10 Si 0.95 46.10 27.47 68.60 1.88 47.98 16 11 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 13 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 14 C 0.69 30.65 8.25 179.05 1.48 32.13 16 15 O -0.62 -34.36 13.10 -4.05 -0.05 -34.41 16 16 N -0.65 -20.53 5.34 -317.68 -1.70 -22.23 16 17 C 0.05 1.53 6.91 37.63 0.26 1.79 16 18 C -0.13 -5.20 9.44 22.68 0.21 -4.98 16 19 C -0.06 -1.86 6.88 40.32 0.28 -1.59 16 20 C 0.54 16.85 7.92 69.97 0.55 17.41 16 21 O -0.54 -21.51 16.68 19.40 0.32 -21.19 16 22 O -0.35 -7.38 7.98 -58.13 -0.46 -7.85 16 23 C 0.03 0.43 10.57 113.37 1.20 1.62 16 24 N -0.40 -8.03 3.17 -533.69 -1.69 -9.72 16 25 C 0.06 0.56 10.56 127.77 1.35 1.91 16 26 C 0.04 0.70 11.42 83.54 0.95 1.66 16 27 H 0.12 1.88 8.06 -2.91 -0.02 1.86 16 28 H 0.10 2.05 7.84 -2.91 -0.02 2.02 16 29 H 0.11 2.52 8.06 -2.91 -0.02 2.49 16 30 H 0.08 2.62 7.72 -2.39 -0.02 2.60 16 31 H 0.10 2.27 6.36 -2.38 -0.02 2.26 16 32 H 0.05 2.40 7.13 -2.39 -0.02 2.39 16 33 H 0.02 0.85 6.85 -2.39 -0.02 0.84 16 34 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 35 H 0.42 9.33 6.56 -92.71 -0.61 8.72 16 36 H 0.13 6.30 5.97 -2.91 -0.02 6.28 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.09 0.95 6.14 -2.39 -0.01 0.94 16 42 H 0.12 0.25 8.14 -2.38 -0.02 0.23 16 43 H 0.23 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -94.50 368.04 5.97 -88.52 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.37 Total: 18.01 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 9.07 Total: 29.71 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -5.16 Total: -120.78 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -0.19 Total: -63.44 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.88 Total: 47.98 kcal Total: -94.50 5.97 -88.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292900175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.677 kcal (2) G-P(sol) polarization free energy of solvation -94.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds