Wall clock time and date at job start Tue Mar 31 2020 13:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37089 * 120.00226 * 2 1 4 4 H 1.08001 * 120.00381 * 184.38832 * 3 2 1 5 5 C 1.38953 * 120.00120 * 4.38194 * 3 2 1 6 6 N 1.31405 * 119.99831 * 5.10592 * 5 3 2 7 7 Si 1.86801 * 120.00287 * 185.09885 * 5 3 2 8 8 H 1.48501 * 109.46874 * 90.00165 * 7 5 3 9 9 H 1.48493 * 109.47406 * 210.00561 * 7 5 3 10 10 H 1.48506 * 109.47200 * 330.00744 * 7 5 3 11 11 C 1.34776 * 119.99874 * 179.97438 * 2 1 3 12 12 O 1.21294 * 120.00239 * 175.37965 * 11 2 1 13 13 C 1.50703 * 120.00141 * 355.38758 * 11 2 1 14 14 C 1.53007 * 109.61553 * 63.41778 * 13 11 2 15 15 C 1.50701 * 109.46971 * 55.92193 * 14 13 11 16 16 C 1.38265 * 119.98671 * 94.54703 * 15 14 13 17 17 C 1.38220 * 120.05520 * 179.97438 * 16 15 14 18 18 C 1.38227 * 120.02321 * 0.02562 * 17 16 15 19 19 C 1.38434 * 119.97373 * 0.02562 * 18 17 16 20 20 F 1.35098 * 120.02789 * 180.02562 * 19 18 17 21 21 C 1.38175 * 119.98822 * 274.27443 * 15 14 13 22 22 C 1.53180 * 109.54311 * 303.19980 * 13 11 2 23 23 C 1.53092 * 109.16077 * 297.11003 * 22 13 11 24 24 O 1.42905 * 109.41360 * 302.39513 * 23 22 13 25 25 C 1.42903 * 114.10149 * 61.15676 * 24 23 22 26 26 C 1.53088 * 109.41343 * 298.84389 * 25 24 23 27 27 H 1.08999 * 109.47041 * 182.56623 * 1 2 3 28 28 H 1.09006 * 109.47090 * 302.56342 * 1 2 3 29 29 H 1.09000 * 109.46879 * 62.56356 * 1 2 3 30 30 H 0.97006 * 120.00312 * 179.97438 * 6 5 3 31 31 H 1.09000 * 109.47063 * 175.92456 * 14 13 11 32 32 H 1.09003 * 109.46868 * 295.92645 * 14 13 11 33 33 H 1.08005 * 119.97239 * 359.97438 * 16 15 14 34 34 H 1.07997 * 119.99162 * 180.02562 * 17 16 15 35 35 H 1.08001 * 120.01438 * 180.02562 * 18 17 16 36 36 H 1.07999 * 120.01094 * 359.97438 * 21 15 14 37 37 H 1.08998 * 109.52521 * 57.01450 * 22 13 11 38 38 H 1.08996 * 109.52229 * 177.20681 * 22 13 11 39 39 H 1.09003 * 109.48102 * 62.37364 * 23 22 13 40 40 H 1.08996 * 109.48468 * 182.40939 * 23 22 13 41 41 H 1.09000 * 109.47780 * 178.85346 * 25 24 23 42 42 H 1.09004 * 109.48933 * 58.83259 * 25 24 23 43 43 H 1.09004 * 109.52166 * 297.69823 * 26 25 24 44 44 H 1.08998 * 109.57039 * 177.54671 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.2281 1.1886 -0.0716 5 6 1.4588 2.3888 0.0919 6 7 0.1583 2.3856 0.2797 7 14 2.3778 4.0089 -0.0512 8 1 2.4214 4.4291 -1.4748 9 1 1.6801 5.0463 0.7501 10 1 3.7627 3.8390 0.4573 11 6 2.1388 -1.1672 0.0005 12 8 3.3488 -1.1690 -0.0841 13 6 1.3890 -2.4702 0.1061 14 6 0.4860 -2.6437 -1.1169 15 6 1.3160 -2.5506 -2.3713 16 6 1.8007 -3.7007 -2.9662 17 6 2.5616 -3.6170 -4.1171 18 6 2.8393 -2.3829 -4.6744 19 6 2.3554 -1.2306 -4.0791 20 9 2.6257 -0.0239 -4.6231 21 6 1.5875 -1.3162 -2.9297 22 6 0.5347 -2.4682 1.3775 23 6 1.4524 -2.3735 2.5993 24 8 2.3745 -3.4652 2.5865 25 6 3.2321 -3.4914 1.4438 26 6 2.3859 -3.6310 0.1757 27 1 -0.3633 -1.0266 0.0460 28 1 -0.3633 0.5532 0.8662 29 1 -0.3633 0.4735 -0.9121 30 1 -0.3246 3.2245 0.3443 31 1 -0.0001 -3.6184 -1.0743 32 1 -0.2714 -1.8598 -1.1234 33 1 1.5845 -4.6654 -2.5313 34 1 2.9393 -4.5161 -4.5811 35 1 3.4335 -2.3177 -5.5738 36 1 1.2048 -0.4183 -2.4676 37 1 -0.1401 -1.6125 1.3617 38 1 -0.0452 -3.3897 1.4281 39 1 2.0023 -1.4329 2.5688 40 1 0.8527 -2.4148 3.5085 41 1 3.9144 -4.3379 1.5207 42 1 3.8055 -2.5654 1.3981 43 1 1.8434 -4.5760 0.2020 44 1 3.0342 -3.6074 -0.7003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293028250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:40 Heat of formation + Delta-G solvation = -69.693861 kcal Electronic energy + Delta-G solvation = -29583.550857 eV Core-core repulsion = 25609.692628 eV Total energy + Delta-G solvation = -3973.858229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.48014 -40.68224 -38.52323 -37.40733 -34.88461 -34.66802 -31.73625 -31.31575 -30.42984 -30.09791 -27.42014 -26.39357 -24.94835 -23.36840 -23.05289 -22.40185 -21.12065 -20.88604 -18.25094 -17.06241 -16.97160 -16.05184 -15.90352 -15.84707 -15.50038 -15.45853 -15.17435 -14.68578 -14.50961 -14.29540 -13.95254 -13.82308 -13.27951 -13.05159 -12.90759 -12.67984 -12.63352 -12.17732 -11.97726 -11.83683 -11.60528 -11.43417 -11.15610 -11.09926 -10.99863 -10.90699 -10.76233 -10.55153 -10.37885 -10.14950 -9.98814 -9.66722 -9.15417 -9.01028 -8.57868 -8.36177 -8.19194 -7.86563 -6.22442 -3.83820 1.43720 1.52772 3.14536 3.23781 3.28756 3.79006 3.90622 4.09140 4.32788 4.55786 4.72156 4.87059 4.99622 5.06876 5.10424 5.24121 5.29803 5.37958 5.44920 5.48104 5.62219 5.70601 5.75944 5.77483 5.90283 6.02991 6.04496 6.08372 6.14662 6.22052 6.27060 6.32464 6.35430 6.47764 6.49623 6.51705 6.56384 6.65678 6.82195 6.97503 7.21471 7.37781 7.56184 7.65094 8.04727 8.47002 9.17248 9.42833 9.95911 10.67023 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009571 B = 0.007624 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.736130 B = 3671.525787 C = 5661.165664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.444 5.444 3 C -0.297 4.297 4 H 0.102 0.898 5 C 0.028 3.972 6 N -0.889 5.889 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.455 3.545 12 O -0.587 6.587 13 C -0.064 4.064 14 C -0.087 4.087 15 C -0.044 4.044 16 C -0.129 4.129 17 C -0.098 4.098 18 C -0.164 4.164 19 C 0.102 3.898 20 F -0.141 7.141 21 C -0.130 4.130 22 C -0.159 4.159 23 C 0.063 3.937 24 O -0.392 6.392 25 C 0.052 3.948 26 C -0.121 4.121 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.265 0.735 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.144 0.856 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 -11.240 -3.610 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.161 5.161 3 C -0.425 4.425 4 H 0.120 0.880 5 C -0.173 4.173 6 N -0.530 5.530 7 Si 0.753 3.247 8 H -0.204 1.204 9 H -0.209 1.209 10 H -0.195 1.195 11 C 0.243 3.757 12 O -0.472 6.472 13 C -0.067 4.067 14 C -0.124 4.124 15 C -0.044 4.044 16 C -0.147 4.147 17 C -0.116 4.116 18 C -0.183 4.183 19 C 0.083 3.917 20 F -0.120 7.120 21 C -0.149 4.149 22 C -0.197 4.197 23 C -0.013 4.013 24 O -0.311 6.311 25 C -0.024 4.024 26 C -0.159 4.159 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.161 0.839 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.084 -11.128 -3.503 11.851 hybrid contribution 0.275 1.424 -0.511 1.538 sum -1.809 -9.703 -4.014 10.656 Atomic orbital electron populations 1.22551 0.81067 0.97601 1.04763 1.43613 1.05620 1.04649 1.62252 1.19778 0.93312 0.82064 1.47300 0.87973 1.25245 0.95782 0.99562 0.96758 1.70085 1.06603 1.26907 1.49451 0.85913 0.79428 0.81023 0.78343 1.20372 1.20918 1.19495 1.19520 0.87698 0.84125 0.84377 1.90472 1.14108 1.86615 1.55996 1.20673 0.95854 0.95746 0.94437 1.21130 0.97141 1.03668 0.90466 1.19601 0.97101 0.92181 0.95508 1.21028 0.99358 0.98031 0.96250 1.20845 0.98187 0.96628 0.95946 1.21035 1.03479 0.91806 1.01976 1.17706 0.99286 0.80371 0.94327 1.91490 1.92220 1.43144 1.85108 1.21321 0.99229 0.99656 0.94706 1.22655 0.98908 1.03804 0.94313 1.22497 0.91054 0.90314 0.97484 1.87798 1.50440 1.49055 1.43834 1.22768 0.92120 1.03164 0.84334 1.21935 0.97997 0.96133 0.99804 0.93395 0.88936 0.93135 0.92451 0.90472 0.88532 0.85798 0.85562 0.85419 0.83860 0.88440 0.91098 0.92560 0.89384 0.90095 0.90269 0.91941 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.73 5.97 59.85 0.36 2.08 16 2 N -0.44 -10.46 2.23 -122.19 -0.27 -10.73 16 3 C -0.30 -7.92 9.57 -14.94 -0.14 -8.06 16 4 H 0.10 2.93 7.17 -52.49 -0.38 2.56 16 5 C 0.03 0.71 5.43 -17.47 -0.09 0.62 16 6 N -0.89 -22.40 9.51 55.50 0.53 -21.88 16 7 Si 0.93 20.79 29.56 -169.99 -5.02 15.77 16 8 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 C 0.46 10.11 3.12 -10.98 -0.03 10.07 16 12 O -0.59 -15.12 13.57 5.55 0.08 -15.04 16 13 C -0.06 -1.10 0.28 -155.47 -0.04 -1.14 16 14 C -0.09 -1.31 4.15 -27.88 -0.12 -1.43 16 15 C -0.04 -0.71 4.21 -104.63 -0.44 -1.15 16 16 C -0.13 -1.77 8.40 -39.58 -0.33 -2.10 16 17 C -0.10 -1.28 10.04 -39.59 -0.40 -1.68 16 18 C -0.16 -2.44 10.03 -39.51 -0.40 -2.83 16 19 C 0.10 1.86 7.30 -39.42 -0.29 1.57 16 20 F -0.14 -2.74 17.27 2.25 0.04 -2.71 16 21 C -0.13 -2.47 8.44 -39.51 -0.33 -2.81 16 22 C -0.16 -2.51 4.56 -26.59 -0.12 -2.63 16 23 C 0.06 1.08 6.62 37.20 0.25 1.32 16 24 O -0.39 -6.96 10.77 -35.23 -0.38 -7.34 16 25 C 0.05 0.92 6.55 37.20 0.24 1.16 16 26 C -0.12 -1.97 4.08 -26.60 -0.11 -2.08 16 27 H 0.05 0.83 2.31 -51.93 -0.12 0.71 16 28 H 0.09 2.10 6.40 -51.93 -0.33 1.76 16 29 H 0.05 1.12 7.58 -51.93 -0.39 0.72 16 30 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 31 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 32 H 0.10 1.48 4.85 -51.93 -0.25 1.23 16 33 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.14 3.09 6.61 -52.49 -0.35 2.74 16 37 H 0.10 1.55 4.68 -51.93 -0.24 1.31 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.13 7.38 -51.93 -0.38 0.75 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.08 1.65 5.94 -51.93 -0.31 1.34 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 1.38 6.54 -51.93 -0.34 1.04 16 LS Contribution 335.53 15.07 5.06 5.06 Total: -1.00 -29.48 335.53 -7.59 -37.07 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.61 Total: 8.88 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -2.00 Total: -9.09 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.26 Total: -32.61 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.30 Total: -22.38 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.48 -7.59 -37.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293028250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.624 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds