Wall clock time and date at job start Tue Mar 31 2020 13:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37089 * 120.00226 * 2 1 4 4 H 1.08001 * 120.00381 * 184.38832 * 3 2 1 5 5 C 1.38953 * 120.00120 * 4.38194 * 3 2 1 6 6 N 1.31405 * 119.99831 * 5.10592 * 5 3 2 7 7 Si 1.86801 * 120.00287 * 185.09885 * 5 3 2 8 8 H 1.48501 * 109.46874 * 90.00165 * 7 5 3 9 9 H 1.48493 * 109.47406 * 210.00561 * 7 5 3 10 10 H 1.48506 * 109.47200 * 330.00744 * 7 5 3 11 11 C 1.34776 * 119.99874 * 179.97438 * 2 1 3 12 12 O 1.21294 * 120.00239 * 175.37965 * 11 2 1 13 13 C 1.50703 * 120.00141 * 355.38758 * 11 2 1 14 14 C 1.53007 * 109.61553 * 63.41778 * 13 11 2 15 15 C 1.50701 * 109.46971 * 55.92193 * 14 13 11 16 16 C 1.38265 * 119.98671 * 94.54703 * 15 14 13 17 17 C 1.38220 * 120.05520 * 179.97438 * 16 15 14 18 18 C 1.38227 * 120.02321 * 0.02562 * 17 16 15 19 19 C 1.38434 * 119.97373 * 0.02562 * 18 17 16 20 20 F 1.35098 * 120.02789 * 180.02562 * 19 18 17 21 21 C 1.38175 * 119.98822 * 274.27443 * 15 14 13 22 22 C 1.53180 * 109.54311 * 303.19980 * 13 11 2 23 23 C 1.53092 * 109.16077 * 297.11003 * 22 13 11 24 24 O 1.42905 * 109.41360 * 302.39513 * 23 22 13 25 25 C 1.42903 * 114.10149 * 61.15676 * 24 23 22 26 26 C 1.53088 * 109.41343 * 298.84389 * 25 24 23 27 27 H 1.08999 * 109.47041 * 182.56623 * 1 2 3 28 28 H 1.09006 * 109.47090 * 302.56342 * 1 2 3 29 29 H 1.09000 * 109.46879 * 62.56356 * 1 2 3 30 30 H 0.97006 * 120.00312 * 179.97438 * 6 5 3 31 31 H 1.09000 * 109.47063 * 175.92456 * 14 13 11 32 32 H 1.09003 * 109.46868 * 295.92645 * 14 13 11 33 33 H 1.08005 * 119.97239 * 359.97438 * 16 15 14 34 34 H 1.07997 * 119.99162 * 180.02562 * 17 16 15 35 35 H 1.08001 * 120.01438 * 180.02562 * 18 17 16 36 36 H 1.07999 * 120.01094 * 359.97438 * 21 15 14 37 37 H 1.08998 * 109.52521 * 57.01450 * 22 13 11 38 38 H 1.08996 * 109.52229 * 177.20681 * 22 13 11 39 39 H 1.09003 * 109.48102 * 62.37364 * 23 22 13 40 40 H 1.08996 * 109.48468 * 182.40939 * 23 22 13 41 41 H 1.09000 * 109.47780 * 178.85346 * 25 24 23 42 42 H 1.09004 * 109.48933 * 58.83259 * 25 24 23 43 43 H 1.09004 * 109.52166 * 297.69823 * 26 25 24 44 44 H 1.08998 * 109.57039 * 177.54671 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.2281 1.1886 -0.0716 5 6 1.4588 2.3888 0.0919 6 7 0.1583 2.3856 0.2797 7 14 2.3778 4.0089 -0.0512 8 1 2.4214 4.4291 -1.4748 9 1 1.6801 5.0463 0.7501 10 1 3.7627 3.8390 0.4573 11 6 2.1388 -1.1672 0.0005 12 8 3.3488 -1.1690 -0.0841 13 6 1.3890 -2.4702 0.1061 14 6 0.4860 -2.6437 -1.1169 15 6 1.3160 -2.5506 -2.3713 16 6 1.8007 -3.7007 -2.9662 17 6 2.5616 -3.6170 -4.1171 18 6 2.8393 -2.3829 -4.6744 19 6 2.3554 -1.2306 -4.0791 20 9 2.6257 -0.0239 -4.6231 21 6 1.5875 -1.3162 -2.9297 22 6 0.5347 -2.4682 1.3775 23 6 1.4524 -2.3735 2.5993 24 8 2.3745 -3.4652 2.5865 25 6 3.2321 -3.4914 1.4438 26 6 2.3859 -3.6310 0.1757 27 1 -0.3633 -1.0266 0.0460 28 1 -0.3633 0.5532 0.8662 29 1 -0.3633 0.4735 -0.9121 30 1 -0.3246 3.2245 0.3443 31 1 -0.0001 -3.6184 -1.0743 32 1 -0.2714 -1.8598 -1.1234 33 1 1.5845 -4.6654 -2.5313 34 1 2.9393 -4.5161 -4.5811 35 1 3.4335 -2.3177 -5.5738 36 1 1.2048 -0.4183 -2.4676 37 1 -0.1401 -1.6125 1.3617 38 1 -0.0452 -3.3897 1.4281 39 1 2.0023 -1.4329 2.5688 40 1 0.8527 -2.4148 3.5085 41 1 3.9144 -4.3379 1.5207 42 1 3.8055 -2.5654 1.3981 43 1 1.8434 -4.5760 0.2020 44 1 3.0342 -3.6074 -0.7003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293028250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:39 Heat of formation + Delta-G solvation = -86.899757 kcal Electronic energy + Delta-G solvation = -29584.296961 eV Core-core repulsion = 25609.692628 eV Total energy + Delta-G solvation = -3974.604333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.91022 -42.15546 -39.75596 -38.99838 -36.76779 -36.09627 -33.53467 -32.60791 -31.82743 -31.32566 -28.84376 -28.05316 -26.73547 -24.75244 -24.42429 -23.63326 -22.65897 -22.16752 -19.87764 -18.95605 -18.34907 -17.40455 -17.30189 -17.13412 -17.05749 -16.87556 -16.61274 -16.30017 -16.11418 -15.93867 -15.40612 -15.22950 -14.83411 -14.45804 -14.31808 -14.15298 -13.98167 -13.69020 -13.42887 -13.21643 -13.02731 -12.88261 -12.73783 -12.62005 -12.54931 -12.36511 -12.26723 -12.18850 -12.03360 -11.79437 -11.35064 -11.09286 -11.04183 -10.46036 -10.00212 -9.80861 -9.78274 -9.54891 -8.18464 -5.87751 0.23588 0.31963 1.29564 1.33532 1.43801 2.10296 2.22261 2.65923 2.98658 3.09908 3.14171 3.32356 3.63105 3.67057 3.88641 3.94067 3.99658 4.12867 4.18678 4.23756 4.33747 4.42341 4.45477 4.52499 4.61639 4.67815 4.76076 4.81492 4.83557 4.89927 5.01960 5.05348 5.12932 5.18397 5.21364 5.25561 5.27114 5.29532 5.39693 5.43994 5.58007 5.64417 6.02969 6.08418 6.27870 6.52593 7.21413 7.58252 8.12462 8.66706 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009571 B = 0.007624 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.736130 B = 3671.525787 C = 5661.165664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.458 5.458 3 C -0.329 4.329 4 H 0.066 0.934 5 C -0.002 4.002 6 N -0.894 5.894 7 Si 0.976 3.024 8 H -0.278 1.278 9 H -0.266 1.266 10 H -0.279 1.279 11 C 0.458 3.542 12 O -0.630 6.630 13 C -0.061 4.061 14 C -0.084 4.084 15 C -0.055 4.055 16 C -0.117 4.117 17 C -0.086 4.086 18 C -0.162 4.162 19 C 0.061 3.939 20 F -0.162 7.162 21 C -0.162 4.162 22 C -0.155 4.155 23 C 0.061 3.939 24 O -0.392 6.392 25 C 0.050 3.950 26 C -0.114 4.114 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.268 0.732 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.167 0.833 34 H 0.173 0.827 35 H 0.150 0.850 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.009 0.991 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.032 0.968 43 H 0.107 0.893 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.892 -15.361 -3.842 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.176 5.176 3 C -0.457 4.457 4 H 0.084 0.916 5 C -0.203 4.203 6 N -0.535 5.535 7 Si 0.801 3.199 8 H -0.204 1.204 9 H -0.191 1.191 10 H -0.204 1.204 11 C 0.248 3.752 12 O -0.518 6.518 13 C -0.064 4.064 14 C -0.121 4.121 15 C -0.055 4.055 16 C -0.135 4.135 17 C -0.104 4.104 18 C -0.181 4.181 19 C 0.042 3.958 20 F -0.141 7.141 21 C -0.181 4.181 22 C -0.192 4.192 23 C -0.015 4.015 24 O -0.311 6.311 25 C -0.026 4.026 26 C -0.152 4.152 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.146 0.854 32 H 0.105 0.895 33 H 0.185 0.815 34 H 0.191 0.809 35 H 0.168 0.832 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.134 0.866 39 H 0.028 0.972 40 H 0.135 0.865 41 H 0.126 0.874 42 H 0.051 0.949 43 H 0.126 0.874 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.468 -15.248 -3.728 16.075 hybrid contribution 0.786 2.636 -0.445 2.787 sum -2.682 -12.611 -4.173 13.552 Atomic orbital electron populations 1.22412 0.79554 0.99766 1.02548 1.43722 1.06533 1.04348 1.62966 1.19560 0.92202 0.84392 1.49546 0.91586 1.25809 0.96684 1.01500 0.96285 1.70189 1.06839 1.27531 1.48975 0.85186 0.78150 0.78347 0.78234 1.20436 1.19099 1.20405 1.20544 0.87475 0.85529 0.81651 1.90443 1.16496 1.87614 1.57212 1.20719 0.96421 0.92711 0.96553 1.21170 0.96252 1.06073 0.88582 1.19812 0.97717 0.91906 0.96108 1.21519 0.97584 0.98567 0.95782 1.21424 0.96511 0.97193 0.95266 1.21395 1.02850 0.91333 1.02483 1.18189 1.01283 0.80924 0.95390 1.91420 1.92609 1.44649 1.85447 1.21218 1.01240 0.99729 0.95943 1.22662 0.98358 1.05771 0.92413 1.22556 0.90984 0.88244 0.99756 1.87801 1.50477 1.48682 1.44103 1.22762 0.92559 1.01997 0.85302 1.21947 0.97620 0.97292 0.98360 0.89126 0.90920 0.95410 0.92133 0.85407 0.89504 0.81529 0.80939 0.83200 0.88040 0.89047 0.86580 0.97210 0.86506 0.87367 0.94940 0.87424 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.30 5.97 127.77 0.76 5.06 16 2 N -0.46 -22.90 2.23 -658.89 -1.47 -24.37 16 3 C -0.33 -18.92 9.57 84.04 0.80 -18.12 16 4 H 0.07 4.18 7.17 -2.91 -0.02 4.16 16 5 C 0.00 -0.13 5.43 84.93 0.46 0.33 16 6 N -0.89 -46.87 9.51 21.66 0.21 -46.67 16 7 Si 0.98 44.65 29.56 68.60 2.03 46.68 16 8 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 C 0.46 21.13 3.12 87.66 0.27 21.40 16 12 O -0.63 -34.51 13.57 -3.07 -0.04 -34.55 16 13 C -0.06 -1.97 0.28 -52.81 -0.01 -1.99 16 14 C -0.08 -2.27 4.15 29.85 0.12 -2.14 16 15 C -0.06 -1.70 4.21 -19.87 -0.08 -1.78 16 16 C -0.12 -2.67 8.40 22.27 0.19 -2.48 16 17 C -0.09 -1.88 10.04 22.26 0.22 -1.65 16 18 C -0.16 -4.56 10.03 22.31 0.22 -4.34 16 19 C 0.06 2.31 7.30 22.38 0.16 2.48 16 20 F -0.16 -6.83 17.27 44.97 0.78 -6.06 16 21 C -0.16 -6.42 8.44 22.31 0.19 -6.23 16 22 C -0.15 -4.40 4.56 30.69 0.14 -4.26 16 23 C 0.06 2.00 6.62 72.01 0.48 2.48 16 24 O -0.39 -13.02 10.77 -148.98 -1.60 -14.62 16 25 C 0.05 1.67 6.55 72.01 0.47 2.15 16 26 C -0.11 -3.33 4.08 30.68 0.13 -3.21 16 27 H 0.09 3.09 2.31 -2.39 -0.01 3.08 16 28 H 0.07 3.41 6.40 -2.38 -0.02 3.40 16 29 H 0.03 1.29 7.58 -2.39 -0.02 1.28 16 30 H 0.27 13.33 8.31 -92.70 -0.77 12.56 16 31 H 0.13 2.23 8.05 -2.39 -0.02 2.21 16 32 H 0.09 2.51 4.85 -2.39 -0.01 2.50 16 33 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 35 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.10 4.80 6.61 -2.91 -0.02 4.78 16 37 H 0.09 2.73 4.68 -2.39 -0.01 2.71 16 38 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.01 0.40 7.38 -2.39 -0.02 0.38 16 40 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.03 1.40 5.94 -2.38 -0.01 1.38 16 43 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.07 2.17 6.54 -2.39 -0.02 2.16 16 Total: -1.00 -73.19 335.53 5.46 -67.73 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 1.03 Total: 24.16 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 4.53 Total: -12.31 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -1.26 Total: -71.04 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -1.65 Total: -49.17 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 0.78 Total: -6.06 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -73.19 5.46 -67.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293028250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.168 kcal (2) G-P(sol) polarization free energy of solvation -73.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds