Wall clock time and date at job start Tue Mar 31 2020 13:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37094 * 120.00239 * 2 1 4 4 H 1.07999 * 120.00372 * 183.33995 * 3 2 1 5 5 C 1.38948 * 119.99597 * 3.35153 * 3 2 1 6 6 N 1.31407 * 120.00546 * 8.05660 * 5 3 2 7 7 Si 1.86801 * 119.99747 * 188.05578 * 5 3 2 8 8 H 1.48497 * 109.47416 * 94.98629 * 7 5 3 9 9 H 1.48504 * 109.47183 * 214.98384 * 7 5 3 10 10 H 1.48499 * 109.47621 * 334.98630 * 7 5 3 11 11 C 1.34782 * 120.00019 * 180.02562 * 2 1 3 12 12 O 1.21288 * 120.00230 * 174.61810 * 11 2 1 13 13 C 1.50695 * 119.99808 * 354.60981 * 11 2 1 14 14 C 1.53003 * 109.54560 * 67.29703 * 13 11 2 15 15 C 1.50700 * 109.46748 * 66.46242 * 14 13 11 16 16 C 1.38239 * 119.97593 * 91.33496 * 15 14 13 17 17 C 1.38198 * 120.02977 * 179.97438 * 16 15 14 18 18 C 1.38455 * 119.97098 * 0.22937 * 17 16 15 19 19 F 1.35104 * 120.02341 * 179.73107 * 18 17 16 20 20 C 1.38454 * 119.95188 * 359.49308 * 18 17 16 21 21 C 1.38199 * 119.97021 * 0.52823 * 20 18 17 22 22 C 1.53185 * 109.54446 * 187.47529 * 13 11 2 23 23 C 1.53099 * 109.15803 * 63.06502 * 22 13 11 24 24 O 1.42903 * 109.48616 * 57.47306 * 23 22 13 25 25 C 1.42901 * 114.10425 * 298.88874 * 24 23 22 26 26 C 1.53091 * 109.40971 * 61.15783 * 25 24 23 27 27 H 1.09001 * 109.47073 * 174.17429 * 1 2 3 28 28 H 1.09000 * 109.46608 * 294.16912 * 1 2 3 29 29 H 1.08998 * 109.47309 * 54.16855 * 1 2 3 30 30 H 0.96998 * 120.00493 * 180.02562 * 6 5 3 31 31 H 1.09003 * 109.46621 * 306.46977 * 14 13 11 32 32 H 1.08997 * 109.47230 * 186.46137 * 14 13 11 33 33 H 1.08007 * 119.98564 * 359.97438 * 16 15 14 34 34 H 1.08000 * 120.01030 * 179.97438 * 17 16 15 35 35 H 1.08003 * 120.01874 * 180.25222 * 20 18 17 36 36 H 1.08001 * 119.99063 * 179.74053 * 21 20 18 37 37 H 1.08996 * 109.52414 * 182.88404 * 22 13 11 38 38 H 1.09004 * 109.52002 * 303.07260 * 22 13 11 39 39 H 1.09003 * 109.40627 * 297.49579 * 23 22 13 40 40 H 1.08996 * 109.49353 * 177.51159 * 23 22 13 41 41 H 1.09005 * 109.47931 * 301.17980 * 25 24 23 42 42 H 1.09000 * 109.49417 * 181.14210 * 25 24 23 43 43 H 1.09006 * 109.52086 * 182.49241 * 26 25 24 44 44 H 1.08999 * 109.57681 * 62.33233 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.2291 1.1881 -0.0545 5 6 1.4575 2.3895 0.0704 6 7 0.1629 2.3896 0.2958 7 14 2.3662 4.0059 -0.1555 8 1 2.2638 4.4376 -1.5726 9 1 1.7619 5.0404 0.7219 10 1 3.7955 3.8249 0.2046 11 6 2.1389 -1.1672 -0.0005 12 8 3.3478 -1.1696 -0.0990 13 6 1.3904 -2.4694 0.1215 14 6 0.5470 -2.6948 -1.1351 15 6 1.4557 -2.9037 -2.3190 16 6 1.8523 -4.1811 -2.6684 17 6 2.6852 -4.3740 -3.7542 18 6 3.1263 -3.2868 -4.4894 19 9 3.9449 -3.4737 -5.5478 20 6 2.7238 -2.0084 -4.1421 21 6 1.8913 -1.8179 -3.0556 22 6 2.3879 -3.6208 0.2824 23 6 3.1709 -3.4290 1.5840 24 8 2.2598 -3.3625 2.6830 25 6 1.3350 -2.2756 2.6093 26 6 0.4767 -2.4223 1.3501 27 1 -0.3633 -1.0224 -0.1043 28 1 -0.3632 0.4208 0.9376 29 1 -0.3634 0.6016 -0.8331 30 1 -0.3209 3.2289 0.3445 31 1 -0.0836 -1.8232 -1.3105 32 1 -0.0802 -3.5757 -0.9986 33 1 1.5111 -5.0287 -2.0925 34 1 2.9952 -5.3720 -4.0266 35 1 3.0640 -1.1599 -4.7173 36 1 1.5806 -0.8204 -2.7819 37 1 1.8488 -4.5674 0.3192 38 1 3.0775 -3.6259 -0.5617 39 1 3.7428 -2.5027 1.5295 40 1 3.8513 -4.2685 1.7262 41 1 1.8829 -1.3342 2.5681 42 1 0.6927 -2.2842 3.4900 43 1 -0.1992 -1.5710 1.2688 44 1 -0.1030 -3.3434 1.4086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293033616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:43 Heat of formation + Delta-G solvation = -72.235553 kcal Electronic energy + Delta-G solvation = -29195.321374 eV Core-core repulsion = 25221.352929 eV Total energy + Delta-G solvation = -3973.968445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.71314 -40.67732 -38.60233 -37.41683 -34.89927 -34.63241 -31.78569 -31.01446 -30.87915 -30.29625 -27.22417 -26.36241 -24.92986 -23.29977 -23.08440 -22.73822 -21.04167 -20.95031 -18.24960 -17.44967 -17.01785 -16.15055 -15.95561 -15.84806 -15.51498 -15.38634 -15.08432 -14.65586 -14.50830 -14.22651 -14.00273 -13.72034 -13.39626 -13.27974 -13.01401 -12.96082 -12.69058 -12.24679 -12.00679 -11.84157 -11.64915 -11.37511 -11.18485 -11.10441 -10.98758 -10.93872 -10.75540 -10.57958 -10.39778 -10.17785 -10.01116 -9.69937 -9.15042 -8.98619 -8.85405 -8.33474 -8.18349 -7.88756 -6.29366 -3.85522 1.34885 1.46302 3.10721 3.21227 3.26499 3.73859 3.87981 4.06274 4.32524 4.45226 4.69510 4.85716 4.91809 5.05081 5.06452 5.13164 5.28498 5.37369 5.43401 5.48202 5.51685 5.69202 5.74189 5.80517 5.89709 6.03870 6.06069 6.10564 6.14554 6.18115 6.22562 6.30300 6.32867 6.33905 6.49370 6.51113 6.51919 6.62925 6.80786 6.97992 7.11679 7.31026 7.51314 7.64753 8.02239 8.43743 9.14822 9.40534 9.94181 10.64442 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010434 B = 0.006074 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.784037 B = 4608.526824 C = 6322.221208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.445 5.445 3 C -0.299 4.299 4 H 0.103 0.897 5 C 0.028 3.972 6 N -0.888 5.888 7 Si 0.925 3.075 8 H -0.279 1.279 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.454 3.546 12 O -0.586 6.586 13 C -0.063 4.063 14 C -0.083 4.083 15 C -0.078 4.078 16 C -0.088 4.088 17 C -0.159 4.159 18 C 0.086 3.914 19 F -0.147 7.147 20 C -0.148 4.148 21 C -0.067 4.067 22 C -0.121 4.121 23 C 0.054 3.946 24 O -0.392 6.392 25 C 0.063 3.937 26 C -0.163 4.163 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.265 0.735 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 -10.628 -3.141 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.163 5.163 3 C -0.427 4.427 4 H 0.121 0.879 5 C -0.174 4.174 6 N -0.529 5.529 7 Si 0.752 3.248 8 H -0.205 1.205 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.242 3.758 12 O -0.472 6.472 13 C -0.067 4.067 14 C -0.120 4.120 15 C -0.079 4.079 16 C -0.107 4.107 17 C -0.178 4.178 18 C 0.067 3.933 19 F -0.126 7.126 20 C -0.167 4.167 21 C -0.085 4.085 22 C -0.159 4.159 23 C -0.022 4.022 24 O -0.311 6.311 25 C -0.014 4.014 26 C -0.200 4.200 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.418 -10.571 -3.054 11.266 hybrid contribution 0.375 1.153 -0.568 1.339 sum -2.043 -9.418 -3.622 10.295 Atomic orbital electron populations 1.22333 0.81039 0.97201 1.04395 1.43620 1.05617 1.04688 1.62346 1.19792 0.93216 0.82010 1.47690 0.87907 1.25238 0.95795 0.99527 0.96819 1.70128 1.07097 1.27050 1.48611 0.85909 0.79582 0.81099 0.78171 1.20496 1.20940 1.19446 1.19536 0.87672 0.84102 0.84471 1.90485 1.14177 1.86649 1.55842 1.20666 0.95910 0.95656 0.94447 1.21043 0.96348 1.03504 0.91098 1.19844 0.98619 0.92950 0.96457 1.20856 0.97077 0.96874 0.95844 1.20995 1.01287 0.98011 0.97460 1.17692 0.93969 0.94549 0.87080 1.91461 1.70434 1.96148 1.54542 1.21112 1.00421 0.95555 0.99598 1.21048 0.95079 0.99597 0.92767 1.21973 0.98257 0.96255 0.99432 1.22722 0.91423 1.02867 0.85238 1.87800 1.47723 1.50338 1.45263 1.22500 0.91287 0.90284 0.97298 1.22744 0.98863 1.03973 0.94467 0.93586 0.90904 0.91781 0.92417 0.88819 0.90569 0.85363 0.85264 0.85080 0.84710 0.91972 0.90106 0.90676 0.90039 0.92544 0.89400 0.88169 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.90 6.23 59.85 0.37 2.27 16 2 N -0.44 -10.28 3.01 -122.20 -0.37 -10.64 16 3 C -0.30 -7.81 9.57 -14.94 -0.14 -7.95 16 4 H 0.10 2.88 7.18 -52.49 -0.38 2.50 16 5 C 0.03 0.70 5.40 -17.47 -0.09 0.60 16 6 N -0.89 -22.00 9.56 55.50 0.53 -21.47 16 7 Si 0.93 20.20 29.56 -169.99 -5.02 15.18 16 8 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 C 0.45 9.88 3.69 -10.99 -0.04 9.84 16 12 O -0.59 -14.82 13.74 5.55 0.08 -14.74 16 13 C -0.06 -1.07 0.28 -155.47 -0.04 -1.12 16 14 C -0.08 -1.21 4.12 -27.88 -0.11 -1.33 16 15 C -0.08 -1.20 4.08 -104.62 -0.43 -1.63 16 16 C -0.09 -1.18 8.03 -39.60 -0.32 -1.49 16 17 C -0.16 -2.13 10.03 -39.52 -0.40 -2.52 16 18 C 0.09 1.31 7.30 -39.42 -0.29 1.02 16 19 F -0.15 -2.23 17.27 2.25 0.04 -2.19 16 20 C -0.15 -2.36 10.03 -39.52 -0.40 -2.75 16 21 C -0.07 -1.13 8.84 -39.59 -0.35 -1.48 16 22 C -0.12 -1.97 3.66 -26.58 -0.10 -2.07 16 23 C 0.05 0.94 6.56 37.21 0.24 1.18 16 24 O -0.39 -6.95 10.77 -35.23 -0.38 -7.33 16 25 C 0.06 1.07 6.62 37.20 0.25 1.32 16 26 C -0.16 -2.54 4.53 -26.59 -0.12 -2.66 16 27 H 0.05 0.78 2.58 -51.93 -0.13 0.64 16 28 H 0.07 1.60 6.83 -51.93 -0.35 1.24 16 29 H 0.06 1.40 7.14 -51.93 -0.37 1.03 16 30 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 31 H 0.09 1.42 5.06 -51.93 -0.26 1.15 16 32 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.13 1.92 8.06 -52.48 -0.42 1.50 16 36 H 0.14 2.51 7.98 -52.49 -0.42 2.09 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.41 6.24 -51.93 -0.32 1.09 16 39 H 0.08 1.55 6.09 -51.93 -0.32 1.24 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.13 7.38 -51.93 -0.38 0.75 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.10 1.58 4.32 -51.93 -0.22 1.36 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -28.54 338.13 -7.68 -36.21 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.68 Total: 8.66 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -1.97 Total: -8.78 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.16 Total: -32.11 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.30 Total: -22.07 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.54 -7.68 -36.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293033616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.023 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds