Wall clock time and date at job start Tue Mar 31 2020 13:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37094 * 120.00239 * 2 1 4 4 H 1.07999 * 120.00372 * 183.33995 * 3 2 1 5 5 C 1.38948 * 119.99597 * 3.35153 * 3 2 1 6 6 N 1.31407 * 120.00546 * 8.05660 * 5 3 2 7 7 Si 1.86801 * 119.99747 * 188.05578 * 5 3 2 8 8 H 1.48497 * 109.47416 * 94.98629 * 7 5 3 9 9 H 1.48504 * 109.47183 * 214.98384 * 7 5 3 10 10 H 1.48499 * 109.47621 * 334.98630 * 7 5 3 11 11 C 1.34782 * 120.00019 * 180.02562 * 2 1 3 12 12 O 1.21288 * 120.00230 * 174.61810 * 11 2 1 13 13 C 1.50695 * 119.99808 * 354.60981 * 11 2 1 14 14 C 1.53003 * 109.54560 * 67.29703 * 13 11 2 15 15 C 1.50700 * 109.46748 * 66.46242 * 14 13 11 16 16 C 1.38239 * 119.97593 * 91.33496 * 15 14 13 17 17 C 1.38198 * 120.02977 * 179.97438 * 16 15 14 18 18 C 1.38455 * 119.97098 * 0.22937 * 17 16 15 19 19 F 1.35104 * 120.02341 * 179.73107 * 18 17 16 20 20 C 1.38454 * 119.95188 * 359.49308 * 18 17 16 21 21 C 1.38199 * 119.97021 * 0.52823 * 20 18 17 22 22 C 1.53185 * 109.54446 * 187.47529 * 13 11 2 23 23 C 1.53099 * 109.15803 * 63.06502 * 22 13 11 24 24 O 1.42903 * 109.48616 * 57.47306 * 23 22 13 25 25 C 1.42901 * 114.10425 * 298.88874 * 24 23 22 26 26 C 1.53091 * 109.40971 * 61.15783 * 25 24 23 27 27 H 1.09001 * 109.47073 * 174.17429 * 1 2 3 28 28 H 1.09000 * 109.46608 * 294.16912 * 1 2 3 29 29 H 1.08998 * 109.47309 * 54.16855 * 1 2 3 30 30 H 0.96998 * 120.00493 * 180.02562 * 6 5 3 31 31 H 1.09003 * 109.46621 * 306.46977 * 14 13 11 32 32 H 1.08997 * 109.47230 * 186.46137 * 14 13 11 33 33 H 1.08007 * 119.98564 * 359.97438 * 16 15 14 34 34 H 1.08000 * 120.01030 * 179.97438 * 17 16 15 35 35 H 1.08003 * 120.01874 * 180.25222 * 20 18 17 36 36 H 1.08001 * 119.99063 * 179.74053 * 21 20 18 37 37 H 1.08996 * 109.52414 * 182.88404 * 22 13 11 38 38 H 1.09004 * 109.52002 * 303.07260 * 22 13 11 39 39 H 1.09003 * 109.40627 * 297.49579 * 23 22 13 40 40 H 1.08996 * 109.49353 * 177.51159 * 23 22 13 41 41 H 1.09005 * 109.47931 * 301.17980 * 25 24 23 42 42 H 1.09000 * 109.49417 * 181.14210 * 25 24 23 43 43 H 1.09006 * 109.52086 * 182.49241 * 26 25 24 44 44 H 1.08999 * 109.57681 * 62.33233 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.2291 1.1881 -0.0545 5 6 1.4575 2.3895 0.0704 6 7 0.1629 2.3896 0.2958 7 14 2.3662 4.0059 -0.1555 8 1 2.2638 4.4376 -1.5726 9 1 1.7619 5.0404 0.7219 10 1 3.7955 3.8249 0.2046 11 6 2.1389 -1.1672 -0.0005 12 8 3.3478 -1.1696 -0.0990 13 6 1.3904 -2.4694 0.1215 14 6 0.5470 -2.6948 -1.1351 15 6 1.4557 -2.9037 -2.3190 16 6 1.8523 -4.1811 -2.6684 17 6 2.6852 -4.3740 -3.7542 18 6 3.1263 -3.2868 -4.4894 19 9 3.9449 -3.4737 -5.5478 20 6 2.7238 -2.0084 -4.1421 21 6 1.8913 -1.8179 -3.0556 22 6 2.3879 -3.6208 0.2824 23 6 3.1709 -3.4290 1.5840 24 8 2.2598 -3.3625 2.6830 25 6 1.3350 -2.2756 2.6093 26 6 0.4767 -2.4223 1.3501 27 1 -0.3633 -1.0224 -0.1043 28 1 -0.3632 0.4208 0.9376 29 1 -0.3634 0.6016 -0.8331 30 1 -0.3209 3.2289 0.3445 31 1 -0.0836 -1.8232 -1.3105 32 1 -0.0802 -3.5757 -0.9986 33 1 1.5111 -5.0287 -2.0925 34 1 2.9952 -5.3720 -4.0266 35 1 3.0640 -1.1599 -4.7173 36 1 1.5806 -0.8204 -2.7819 37 1 1.8488 -4.5674 0.3192 38 1 3.0775 -3.6259 -0.5617 39 1 3.7428 -2.5027 1.5295 40 1 3.8513 -4.2685 1.7262 41 1 1.8829 -1.3342 2.5681 42 1 0.6927 -2.2842 3.4900 43 1 -0.1992 -1.5710 1.2688 44 1 -0.1030 -3.3434 1.4086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293033616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:42 Heat of formation + Delta-G solvation = -88.277020 kcal Electronic energy + Delta-G solvation = -29196.016984 eV Core-core repulsion = 25221.352929 eV Total energy + Delta-G solvation = -3974.664056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.89260 -42.11931 -39.81428 -38.98609 -36.74442 -36.03990 -33.54714 -32.27162 -32.09641 -31.64099 -28.69254 -27.92059 -26.68051 -24.63688 -24.41875 -23.94729 -22.58595 -22.14239 -19.84114 -18.92223 -18.62038 -17.48506 -17.36404 -17.17010 -16.89293 -16.59648 -16.57777 -16.23338 -15.99312 -15.84028 -15.43296 -15.04506 -14.87002 -14.46800 -14.38968 -14.26158 -14.14288 -13.76470 -13.51540 -13.23251 -12.98939 -12.89427 -12.68739 -12.58026 -12.48759 -12.42211 -12.23008 -12.17536 -11.95335 -11.77238 -11.35369 -11.12869 -10.96810 -10.42185 -10.00390 -9.99497 -9.76922 -9.43899 -8.20777 -5.84624 0.18134 0.31968 1.32320 1.37350 1.47841 2.11849 2.24819 2.62969 2.98706 3.11475 3.16189 3.30606 3.60919 3.70570 3.83764 3.92733 3.97521 4.07058 4.17598 4.22651 4.33357 4.37710 4.43736 4.57665 4.63115 4.72562 4.79660 4.81212 4.85234 4.90416 5.01509 5.03541 5.10758 5.18005 5.19264 5.22689 5.28754 5.30174 5.31776 5.47372 5.57135 5.65462 5.98127 6.10045 6.27961 6.54102 7.23880 7.59978 8.14567 8.69194 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010434 B = 0.006074 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.784037 B = 4608.526824 C = 6322.221208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.460 5.460 3 C -0.332 4.332 4 H 0.068 0.932 5 C -0.001 4.001 6 N -0.894 5.894 7 Si 0.977 3.023 8 H -0.274 1.274 9 H -0.271 1.271 10 H -0.281 1.281 11 C 0.457 3.543 12 O -0.629 6.629 13 C -0.060 4.060 14 C -0.080 4.080 15 C -0.086 4.086 16 C -0.077 4.077 17 C -0.149 4.149 18 C 0.073 3.927 19 F -0.150 7.150 20 C -0.166 4.166 21 C -0.092 4.092 22 C -0.115 4.115 23 C 0.052 3.948 24 O -0.392 6.392 25 C 0.061 3.939 26 C -0.158 4.158 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.269 0.731 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.170 0.830 34 H 0.162 0.838 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.029 0.971 40 H 0.107 0.893 41 H 0.010 0.990 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 -13.966 -2.907 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.178 5.178 3 C -0.460 4.460 4 H 0.086 0.914 5 C -0.202 4.202 6 N -0.535 5.535 7 Si 0.802 3.198 8 H -0.199 1.199 9 H -0.196 1.196 10 H -0.206 1.206 11 C 0.247 3.753 12 O -0.517 6.517 13 C -0.063 4.063 14 C -0.117 4.117 15 C -0.086 4.086 16 C -0.094 4.094 17 C -0.168 4.168 18 C 0.054 3.946 19 F -0.129 7.129 20 C -0.185 4.185 21 C -0.111 4.111 22 C -0.153 4.153 23 C -0.025 4.025 24 O -0.311 6.311 25 C -0.016 4.016 26 C -0.195 4.195 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.143 0.857 33 H 0.188 0.812 34 H 0.180 0.820 35 H 0.145 0.855 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.125 0.875 41 H 0.029 0.971 42 H 0.134 0.866 43 H 0.114 0.886 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.267 -13.905 -2.820 14.816 hybrid contribution 1.031 2.165 -0.632 2.480 sum -3.236 -11.740 -3.452 12.658 Atomic orbital electron populations 1.22224 0.79438 0.99315 1.02444 1.43756 1.06608 1.04399 1.63043 1.19595 0.92184 0.84228 1.49987 0.91351 1.25793 0.96636 1.01454 0.96276 1.70215 1.07400 1.27720 1.48136 0.85153 0.78006 0.78249 0.78382 1.19915 1.19615 1.20604 1.20523 0.87438 0.85469 0.81865 1.90458 1.16551 1.87617 1.57044 1.20700 0.96389 0.92654 0.96594 1.21076 0.96052 1.05281 0.89261 1.19999 0.98829 0.93350 0.96438 1.21256 0.95770 0.96910 0.95507 1.21402 1.00061 0.98741 0.96573 1.17873 0.94372 0.94792 0.87539 1.91450 1.70563 1.96111 1.54742 1.21160 1.01022 0.96457 0.99875 1.20924 0.96772 0.99097 0.94264 1.21976 0.97922 0.97534 0.97854 1.22719 0.91787 1.01652 0.86296 1.87803 1.47757 1.50011 1.45533 1.22561 0.91233 0.88206 0.99588 1.22748 0.98289 1.05970 0.92529 0.89351 0.92668 0.93932 0.92078 0.89831 0.85687 0.81229 0.81993 0.85492 0.87898 0.87586 0.91429 0.95271 0.87469 0.97148 0.86637 0.88616 0.86770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.47 6.23 127.77 0.80 5.27 16 2 N -0.46 -22.25 3.01 -658.91 -1.99 -24.23 16 3 C -0.33 -18.44 9.57 84.04 0.80 -17.63 16 4 H 0.07 4.18 7.18 -2.91 -0.02 4.16 16 5 C 0.00 -0.04 5.40 84.93 0.46 0.42 16 6 N -0.89 -45.39 9.56 21.66 0.21 -45.19 16 7 Si 0.98 42.88 29.56 68.60 2.03 44.91 16 8 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 C 0.46 20.48 3.69 87.65 0.32 20.80 16 12 O -0.63 -33.65 13.74 -3.05 -0.04 -33.70 16 13 C -0.06 -1.90 0.28 -52.81 -0.01 -1.92 16 14 C -0.08 -2.07 4.12 29.85 0.12 -1.94 16 15 C -0.09 -2.44 4.08 -19.86 -0.08 -2.53 16 16 C -0.08 -1.71 8.03 22.26 0.18 -1.53 16 17 C -0.15 -3.49 10.03 22.31 0.22 -3.26 16 18 C 0.07 2.15 7.30 22.37 0.16 2.32 16 19 F -0.15 -4.44 17.27 44.97 0.78 -3.66 16 20 C -0.17 -5.49 10.03 22.31 0.22 -5.26 16 21 C -0.09 -3.21 8.84 22.26 0.20 -3.02 16 22 C -0.12 -3.36 3.66 30.69 0.11 -3.24 16 23 C 0.05 1.73 6.56 72.02 0.47 2.21 16 24 O -0.39 -13.02 10.77 -148.98 -1.60 -14.62 16 25 C 0.06 1.97 6.62 72.01 0.48 2.45 16 26 C -0.16 -4.41 4.53 30.69 0.14 -4.27 16 27 H 0.09 2.86 2.58 -2.39 -0.01 2.85 16 28 H 0.05 2.46 6.83 -2.39 -0.02 2.44 16 29 H 0.04 1.91 7.14 -2.39 -0.02 1.90 16 30 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 31 H 0.08 2.35 5.06 -2.39 -0.01 2.34 16 32 H 0.12 2.10 8.07 -2.39 -0.02 2.08 16 33 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 35 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 36 H 0.10 4.16 7.98 -2.91 -0.02 4.14 16 37 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.07 2.18 6.24 -2.38 -0.01 2.17 16 39 H 0.03 1.24 6.09 -2.39 -0.01 1.23 16 40 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.01 0.42 7.38 -2.38 -0.02 0.40 16 42 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.10 2.78 4.32 -2.38 -0.01 2.77 16 44 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -67.99 338.13 5.01 -62.99 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 1.03 Total: 24.64 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 4.60 Total: -11.15 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -1.78 Total: -69.42 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -1.65 Total: -48.32 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.78 Total: -3.66 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -67.99 5.01 -62.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293033616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.288 kcal (2) G-P(sol) polarization free energy of solvation -67.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds