Wall clock time and date at job start Tue Mar 31 2020 12:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47196 * 2 1 4 4 C 1.36939 * 119.99493 * 276.55406 * 3 2 1 5 5 H 1.08000 * 120.00035 * 323.14357 * 4 3 2 6 6 C 1.38807 * 120.00029 * 143.14974 * 4 3 2 7 7 N 1.31626 * 119.99792 * 348.95085 * 6 4 3 8 8 Si 1.86795 * 120.00357 * 168.94811 * 6 4 3 9 9 H 1.48504 * 109.47045 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47166 * 120.00029 * 8 6 4 11 11 H 1.48499 * 109.47337 * 239.99840 * 8 6 4 12 12 C 1.46498 * 120.00136 * 96.55404 * 3 2 1 13 13 H 1.09000 * 109.47091 * 185.19272 * 12 3 2 14 14 C 1.52995 * 109.47108 * 305.19400 * 12 3 2 15 15 C 1.50701 * 109.47026 * 65.19648 * 12 3 2 16 16 O 1.21278 * 120.00257 * 359.97438 * 15 12 3 17 17 N 1.34783 * 119.99804 * 180.02562 * 15 12 3 18 18 C 1.39920 * 119.99907 * 175.00145 * 17 15 12 19 19 C 1.38892 * 120.07323 * 29.64487 * 18 17 15 20 20 C 1.38095 * 119.92938 * 180.02562 * 19 18 17 21 21 C 1.38298 * 120.06997 * 0.04686 * 20 19 18 22 22 C 1.38259 * 120.14455 * 359.97438 * 21 20 19 23 23 N 1.48012 * 119.96724 * 180.02562 * 22 21 20 24 24 O 1.21807 * 120.00062 * 141.34034 * 23 22 21 25 25 O 1.21802 * 119.99831 * 321.33699 * 23 22 21 26 26 C 1.38139 * 120.06731 * 0.02562 * 22 21 20 27 27 C 1.50708 * 120.03411 * 179.72274 * 26 22 21 28 28 H 1.09005 * 109.47444 * 300.00607 * 1 2 3 29 29 H 1.09003 * 109.47111 * 60.00352 * 1 2 3 30 30 H 1.08996 * 109.47324 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47490 * 239.99202 * 2 1 3 32 32 H 1.09003 * 109.47111 * 119.99648 * 2 1 3 33 33 H 0.97001 * 119.99769 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47220 * 299.99989 * 14 12 3 35 35 H 1.09000 * 109.47249 * 59.99969 * 14 12 3 36 36 H 1.08997 * 109.46976 * 180.02562 * 14 12 3 37 37 H 0.96997 * 119.99547 * 354.99205 * 17 15 12 38 38 H 1.08000 * 120.03651 * 0.02562 * 19 18 17 39 39 H 1.07994 * 119.96251 * 180.02562 * 20 19 18 40 40 H 1.08001 * 119.93013 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.46931 * 83.21089 * 27 26 22 42 42 H 1.09001 * 109.46896 * 203.21474 * 27 26 22 43 43 H 1.08994 * 109.46948 * 323.21398 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1189 2.0718 -1.1782 5 1 2.4277 1.5615 -2.0786 6 6 1.8241 3.4277 -1.2154 7 7 1.2436 4.0035 -0.1838 8 14 2.2512 4.4354 -2.7291 9 1 2.8931 3.5594 -3.7420 10 1 1.0121 5.0244 -3.2974 11 1 3.1883 5.5236 -2.3513 12 6 2.3990 2.0236 1.2604 13 1 2.6467 3.0688 1.0752 14 6 1.2322 1.9430 2.2467 15 6 3.5976 1.3187 1.8414 16 8 4.0855 0.3727 1.2602 17 7 4.1268 1.7391 3.0076 18 6 5.1725 1.0225 3.6000 19 6 6.0646 0.3108 2.8083 20 6 7.0952 -0.3958 3.3961 21 6 7.2390 -0.3961 4.7716 22 6 6.3524 0.3110 5.5625 23 7 6.5104 0.3085 7.0342 24 8 6.3025 1.3260 7.6708 25 8 6.8481 -0.7110 7.6087 26 6 5.3194 1.0199 4.9807 27 6 4.3497 1.7853 5.8439 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.0373 4.9509 -0.2099 34 1 0.3653 2.4528 1.8264 35 1 0.9845 0.8978 2.4319 36 1 1.5153 2.4213 3.1843 37 1 3.7828 2.5384 3.4360 38 1 5.9523 0.3100 1.7341 39 1 7.7894 -0.9490 2.7810 40 1 8.0456 -0.9498 5.2290 41 1 4.7743 2.7578 6.0928 42 1 3.4138 1.9250 5.3029 43 1 4.1598 1.2265 6.7602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298173489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:37 Heat of formation + Delta-G solvation = 12.533694 kcal Electronic energy + Delta-G solvation = -27769.671409 eV Core-core repulsion = 23819.298796 eV Total energy + Delta-G solvation = -3950.372613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.30046 -40.62912 -38.72727 -36.63034 -36.09204 -34.82980 -33.09005 -32.00054 -31.47036 -30.01822 -28.44396 -27.66858 -26.10075 -24.43653 -23.78546 -22.39892 -21.90430 -20.99067 -19.79468 -19.01733 -18.70352 -17.81452 -17.31132 -16.77838 -16.11592 -15.94288 -15.40236 -14.98173 -14.47251 -14.13077 -14.03244 -13.86511 -13.59606 -13.40334 -12.99490 -12.51711 -12.48266 -12.34026 -12.05229 -11.90581 -11.68977 -11.65161 -11.55221 -11.25434 -11.18730 -11.13304 -11.06485 -10.86852 -10.62378 -10.41112 -10.28761 -9.99350 -9.79271 -9.46955 -9.06473 -8.72019 -8.30329 -6.78460 -6.04421 -3.56808 -0.03771 0.82966 1.16320 1.32947 2.93247 3.11491 3.25748 3.33165 3.36052 3.39672 4.23638 4.31907 4.39984 4.60380 4.87681 4.90019 5.07466 5.18946 5.21782 5.27649 5.33911 5.53900 5.64700 5.78204 5.93149 5.94357 6.05157 6.09160 6.11834 6.20978 6.30958 6.34678 6.44406 6.48473 6.64463 6.73019 6.94267 7.00820 7.12537 7.24831 7.54062 7.57791 7.65437 8.30697 8.49267 8.99922 9.57908 10.15455 11.02777 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.003282 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.690697 B = 8529.976064 C = 8577.846406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 N -0.558 5.558 4 C -0.253 4.253 5 H 0.066 0.934 6 C 0.011 3.989 7 N -0.899 5.899 8 Si 0.905 3.095 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.288 1.288 12 C 0.172 3.828 13 H 0.132 0.868 14 C -0.140 4.140 15 C 0.489 3.511 16 O -0.516 6.516 17 N -0.678 5.678 18 C 0.170 3.830 19 C -0.085 4.085 20 C -0.099 4.099 21 C -0.089 4.089 22 C -0.022 4.022 23 N 0.029 4.971 24 O -0.153 6.153 25 O -0.164 6.164 26 C -0.069 4.069 27 C -0.123 4.123 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.030 0.970 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.257 0.743 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.413 0.587 38 H 0.168 0.832 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.758 -4.028 9.503 12.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.024 3.976 3 N -0.277 5.277 4 C -0.383 4.383 5 H 0.083 0.917 6 C -0.188 4.188 7 N -0.542 5.542 8 Si 0.734 3.266 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.214 1.214 12 C 0.060 3.940 13 H 0.149 0.851 14 C -0.199 4.199 15 C 0.278 3.722 16 O -0.389 6.389 17 N -0.325 5.325 18 C 0.072 3.928 19 C -0.106 4.106 20 C -0.118 4.118 21 C -0.109 4.109 22 C -0.104 4.104 23 N 0.550 4.450 24 O -0.372 6.372 25 O -0.379 6.379 26 C -0.074 4.074 27 C -0.180 4.180 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.250 0.750 38 H 0.185 0.815 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.844 -4.545 8.236 11.633 hybrid contribution 0.145 0.923 -0.038 0.935 sum 6.989 -3.622 8.197 11.365 Atomic orbital electron populations 1.22365 0.99451 0.98546 1.02144 1.20766 0.91517 0.86515 0.98765 1.43498 1.71471 1.10351 1.02344 1.19216 1.39368 0.91847 0.87867 0.91651 1.25260 0.97467 0.98520 0.97591 1.69865 1.42777 1.11247 1.30318 0.86180 0.77817 0.79988 0.82569 1.20066 1.21382 1.21435 1.20445 0.87472 0.99443 0.86689 0.85076 1.22103 1.00796 1.00098 0.96915 1.24184 0.86200 0.84056 0.77807 1.90517 1.61636 1.28196 1.58558 1.44431 1.33923 1.29104 1.24995 1.17610 0.89863 0.95981 0.89323 1.22090 0.90791 0.94475 1.03210 1.21084 0.98433 0.99418 0.92886 1.20818 0.98739 0.97415 0.93922 1.20511 1.02871 1.08219 0.78834 1.43615 0.97740 0.99977 1.03642 1.94524 1.52934 1.22917 1.66784 1.94538 1.49186 1.22678 1.71531 1.19360 0.96432 0.98385 0.93176 1.20932 0.97605 1.00774 0.98680 0.93298 0.92644 0.95056 0.94223 0.94298 0.93279 0.89631 0.94361 0.94488 0.75016 0.81492 0.83557 0.83939 0.88877 0.90311 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.00 37.16 0.37 -2.79 16 2 C 0.15 3.12 5.00 -4.04 -0.02 3.10 16 3 N -0.56 -12.78 2.08 -166.98 -0.35 -13.12 16 4 C -0.25 -6.41 9.52 -15.06 -0.14 -6.55 16 5 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 6 C 0.01 0.27 5.01 -17.43 -0.09 0.18 16 7 N -0.90 -22.49 10.90 55.49 0.61 -21.89 16 8 Si 0.91 20.09 29.57 -169.99 -5.03 15.06 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.17 3.48 2.19 -69.09 -0.15 3.33 16 13 H 0.13 2.95 5.84 -51.93 -0.30 2.64 16 14 C -0.14 -2.50 7.92 37.16 0.29 -2.20 16 15 C 0.49 8.95 6.75 -10.98 -0.07 8.87 16 16 O -0.52 -10.60 12.18 5.56 0.07 -10.53 16 17 N -0.68 -9.77 4.71 -9.86 -0.05 -9.81 16 18 C 0.17 2.36 6.38 -83.70 -0.53 1.83 16 19 C -0.09 -1.17 8.75 -39.39 -0.34 -1.51 16 20 C -0.10 -1.09 10.04 -39.61 -0.40 -1.48 16 21 C -0.09 -1.00 9.67 -39.55 -0.38 -1.38 16 22 C -0.02 -0.28 6.46 -79.98 -0.52 -0.80 16 23 N 0.03 0.40 4.11 33.95 0.14 0.54 16 24 O -0.15 -2.17 16.90 -29.46 -0.50 -2.66 16 25 O -0.16 -2.38 18.97 -29.46 -0.56 -2.94 16 26 C -0.07 -0.88 5.89 -104.43 -0.61 -1.50 16 27 C -0.12 -1.34 8.22 36.01 0.30 -1.04 16 28 H 0.05 0.93 6.18 -51.93 -0.32 0.61 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.04 0.79 6.69 -51.93 -0.35 0.44 16 33 H 0.26 6.28 8.31 -40.82 -0.34 5.94 16 34 H 0.08 1.74 7.72 -51.93 -0.40 1.33 16 35 H 0.04 0.66 6.66 -51.93 -0.35 0.32 16 36 H 0.04 0.53 7.68 -51.93 -0.40 0.13 16 37 H 0.41 4.96 7.05 -40.82 -0.29 4.68 16 38 H 0.17 2.60 5.80 -52.49 -0.30 2.29 16 39 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.14 1.32 8.03 -52.49 -0.42 0.90 16 41 H 0.09 0.90 8.11 -51.93 -0.42 0.48 16 42 H 0.08 0.77 6.73 -51.93 -0.35 0.43 16 43 H 0.07 0.83 7.06 -51.93 -0.37 0.47 16 LS Contribution 354.67 15.07 5.34 5.34 Total: -1.00 -27.68 354.67 -8.13 -35.81 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.50 Total: 6.13 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.30 Total: -1.94 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.35 Total: -44.28 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.99 Total: -16.13 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.68 -8.13 -35.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298173489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.343 kcal (2) G-P(sol) polarization free energy of solvation -27.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds