Wall clock time and date at job start Tue Mar 31 2020 12:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47196 * 2 1 4 4 C 1.36939 * 119.99493 * 276.55406 * 3 2 1 5 5 H 1.08000 * 120.00035 * 323.14357 * 4 3 2 6 6 C 1.38807 * 120.00029 * 143.14974 * 4 3 2 7 7 N 1.31626 * 119.99792 * 348.95085 * 6 4 3 8 8 Si 1.86795 * 120.00357 * 168.94811 * 6 4 3 9 9 H 1.48504 * 109.47045 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47166 * 120.00029 * 8 6 4 11 11 H 1.48499 * 109.47337 * 239.99840 * 8 6 4 12 12 C 1.46498 * 120.00136 * 96.55404 * 3 2 1 13 13 H 1.09000 * 109.47091 * 185.19272 * 12 3 2 14 14 C 1.52995 * 109.47108 * 305.19400 * 12 3 2 15 15 C 1.50701 * 109.47026 * 65.19648 * 12 3 2 16 16 O 1.21278 * 120.00257 * 359.97438 * 15 12 3 17 17 N 1.34783 * 119.99804 * 180.02562 * 15 12 3 18 18 C 1.39920 * 119.99907 * 175.00145 * 17 15 12 19 19 C 1.38892 * 120.07323 * 29.64487 * 18 17 15 20 20 C 1.38095 * 119.92938 * 180.02562 * 19 18 17 21 21 C 1.38298 * 120.06997 * 0.04686 * 20 19 18 22 22 C 1.38259 * 120.14455 * 359.97438 * 21 20 19 23 23 N 1.48012 * 119.96724 * 180.02562 * 22 21 20 24 24 O 1.21807 * 120.00062 * 141.34034 * 23 22 21 25 25 O 1.21802 * 119.99831 * 321.33699 * 23 22 21 26 26 C 1.38139 * 120.06731 * 0.02562 * 22 21 20 27 27 C 1.50708 * 120.03411 * 179.72274 * 26 22 21 28 28 H 1.09005 * 109.47444 * 300.00607 * 1 2 3 29 29 H 1.09003 * 109.47111 * 60.00352 * 1 2 3 30 30 H 1.08996 * 109.47324 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47490 * 239.99202 * 2 1 3 32 32 H 1.09003 * 109.47111 * 119.99648 * 2 1 3 33 33 H 0.97001 * 119.99769 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47220 * 299.99989 * 14 12 3 35 35 H 1.09000 * 109.47249 * 59.99969 * 14 12 3 36 36 H 1.08997 * 109.46976 * 180.02562 * 14 12 3 37 37 H 0.96997 * 119.99547 * 354.99205 * 17 15 12 38 38 H 1.08000 * 120.03651 * 0.02562 * 19 18 17 39 39 H 1.07994 * 119.96251 * 180.02562 * 20 19 18 40 40 H 1.08001 * 119.93013 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.46931 * 83.21089 * 27 26 22 42 42 H 1.09001 * 109.46896 * 203.21474 * 27 26 22 43 43 H 1.08994 * 109.46948 * 323.21398 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1189 2.0718 -1.1782 5 1 2.4277 1.5615 -2.0786 6 6 1.8241 3.4277 -1.2154 7 7 1.2436 4.0035 -0.1838 8 14 2.2512 4.4354 -2.7291 9 1 2.8931 3.5594 -3.7420 10 1 1.0121 5.0244 -3.2974 11 1 3.1883 5.5236 -2.3513 12 6 2.3990 2.0236 1.2604 13 1 2.6467 3.0688 1.0752 14 6 1.2322 1.9430 2.2467 15 6 3.5976 1.3187 1.8414 16 8 4.0855 0.3727 1.2602 17 7 4.1268 1.7391 3.0076 18 6 5.1725 1.0225 3.6000 19 6 6.0646 0.3108 2.8083 20 6 7.0952 -0.3958 3.3961 21 6 7.2390 -0.3961 4.7716 22 6 6.3524 0.3110 5.5625 23 7 6.5104 0.3085 7.0342 24 8 6.3025 1.3260 7.6708 25 8 6.8481 -0.7110 7.6087 26 6 5.3194 1.0199 4.9807 27 6 4.3497 1.7853 5.8439 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.0373 4.9509 -0.2099 34 1 0.3653 2.4528 1.8264 35 1 0.9845 0.8978 2.4319 36 1 1.5153 2.4213 3.1843 37 1 3.7828 2.5384 3.4360 38 1 5.9523 0.3100 1.7341 39 1 7.7894 -0.9490 2.7810 40 1 8.0456 -0.9498 5.2290 41 1 4.7743 2.7578 6.0928 42 1 3.4138 1.9250 5.3029 43 1 4.1598 1.2265 6.7602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298173489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:35 Heat of formation + Delta-G solvation = -0.756225 kcal Electronic energy + Delta-G solvation = -27770.247703 eV Core-core repulsion = 23819.298796 eV Total energy + Delta-G solvation = -3950.948907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.35969 -41.84612 -39.98237 -37.71624 -37.69017 -36.07646 -34.08657 -33.83397 -32.87052 -31.25244 -30.12640 -28.66193 -27.11863 -26.15653 -25.20453 -23.66252 -23.01383 -22.40006 -21.22968 -20.12766 -19.79512 -19.17835 -18.68890 -18.11624 -17.35519 -17.04999 -16.64666 -16.55465 -16.00472 -15.67670 -15.35484 -14.96851 -14.94874 -14.70543 -14.19003 -13.94491 -13.62929 -13.42744 -13.38472 -13.27756 -13.10611 -12.94868 -12.83525 -12.81570 -12.72564 -12.51203 -12.29745 -12.18904 -12.11307 -12.09892 -11.76199 -11.63369 -11.44122 -10.69983 -10.55726 -10.34978 -9.40451 -8.57187 -7.92026 -5.47157 -1.09595 -0.15234 0.10703 0.28892 1.44597 1.50326 1.58164 1.61193 1.92961 2.30471 2.49977 3.25320 3.32548 3.47066 3.56948 3.63019 3.79410 3.95805 4.10772 4.27168 4.37195 4.43734 4.51621 4.54933 4.68263 4.72729 4.84113 4.86344 4.90331 4.93084 4.97691 4.99541 5.06494 5.09906 5.27217 5.30187 5.38742 5.59986 5.60931 5.64481 5.70017 6.29500 6.46142 6.47374 7.05171 7.21521 7.78381 8.31531 9.11882 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.003282 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.690697 B = 8529.976064 C = 8577.846406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.152 3.848 3 N -0.575 5.575 4 C -0.270 4.270 5 H 0.048 0.952 6 C -0.022 4.022 7 N -0.908 5.908 8 Si 0.957 3.043 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.286 1.286 12 C 0.171 3.829 13 H 0.109 0.891 14 C -0.128 4.128 15 C 0.495 3.505 16 O -0.542 6.542 17 N -0.663 5.663 18 C 0.152 3.848 19 C -0.097 4.097 20 C -0.087 4.087 21 C -0.077 4.077 22 C -0.036 4.036 23 N 0.031 4.969 24 O -0.155 6.155 25 O -0.176 6.176 26 C -0.063 4.063 27 C -0.124 4.124 28 H 0.047 0.953 29 H 0.032 0.968 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.043 0.957 33 H 0.256 0.744 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.424 0.576 38 H 0.147 0.853 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.611 -4.332 10.742 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.027 3.973 3 N -0.294 5.294 4 C -0.401 4.401 5 H 0.066 0.934 6 C -0.220 4.220 7 N -0.552 5.552 8 Si 0.786 3.214 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.212 1.212 12 C 0.060 3.940 13 H 0.126 0.874 14 C -0.187 4.187 15 C 0.284 3.716 16 O -0.418 6.418 17 N -0.310 5.310 18 C 0.055 3.945 19 C -0.117 4.117 20 C -0.106 4.106 21 C -0.097 4.097 22 C -0.119 4.119 23 N 0.550 4.450 24 O -0.375 6.375 25 O -0.390 6.390 26 C -0.068 4.068 27 C -0.181 4.181 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.263 0.737 38 H 0.165 0.835 39 H 0.196 0.804 40 H 0.184 0.816 41 H 0.124 0.876 42 H 0.107 0.893 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.715 -4.854 9.533 13.189 hybrid contribution -0.035 0.981 -0.362 1.047 sum 7.680 -3.873 9.171 12.573 Atomic orbital electron populations 1.22218 0.98061 1.00053 1.00932 1.20755 0.92547 0.85694 0.98333 1.43626 1.72437 1.10840 1.02535 1.19247 1.39810 0.92467 0.88553 0.93383 1.25734 0.97640 0.99009 0.99618 1.69960 1.43020 1.11162 1.31056 0.85387 0.77271 0.78602 0.80181 1.20346 1.21548 1.21236 1.20362 0.89090 0.98079 0.86513 0.87387 1.21943 0.98823 1.00356 0.97573 1.23451 0.85771 0.83624 0.78774 1.90517 1.62217 1.29376 1.59698 1.43937 1.33919 1.29352 1.23832 1.17599 0.90106 0.97004 0.89812 1.22064 0.91932 0.95304 1.02405 1.21362 0.97788 0.98425 0.93043 1.21156 0.98512 0.96222 0.93808 1.20708 1.03671 1.09173 0.78354 1.43731 0.97459 0.99776 1.03992 1.94517 1.52887 1.22932 1.67153 1.94537 1.49798 1.22781 1.71865 1.19437 0.96571 0.98002 0.92750 1.21008 0.97736 1.01070 0.98268 0.93365 0.94840 0.92148 0.95420 0.93862 0.93428 0.92181 0.93942 0.91093 0.73660 0.83501 0.80393 0.81569 0.87556 0.89305 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 10.00 71.98 0.72 -5.07 16 2 C 0.15 6.38 5.00 86.38 0.43 6.81 16 3 N -0.57 -26.75 2.08 -682.21 -1.42 -28.17 16 4 C -0.27 -14.02 9.52 84.03 0.80 -13.22 16 5 H 0.05 2.60 7.85 -2.91 -0.02 2.57 16 6 C -0.02 -1.11 5.01 84.86 0.43 -0.68 16 7 N -0.91 -45.85 10.90 21.65 0.24 -45.61 16 8 Si 0.96 41.71 29.57 68.60 2.03 43.74 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 12 C 0.17 6.94 2.19 44.24 0.10 7.04 16 13 H 0.11 4.92 5.84 -2.39 -0.01 4.90 16 14 C -0.13 -4.46 7.92 71.98 0.57 -3.89 16 15 C 0.50 17.99 6.75 87.66 0.59 18.58 16 16 O -0.54 -22.40 12.18 -3.02 -0.04 -22.43 16 17 N -0.66 -18.35 4.71 -303.51 -1.43 -19.78 16 18 C 0.15 3.99 6.38 38.15 0.24 4.23 16 19 C -0.10 -2.52 8.75 22.39 0.20 -2.32 16 20 C -0.09 -1.69 10.04 22.25 0.22 -1.46 16 21 C -0.08 -1.51 9.67 22.29 0.22 -1.29 16 22 C -0.04 -0.86 6.46 36.36 0.23 -0.63 16 23 N 0.03 0.79 4.11 -46.51 -0.19 0.60 16 24 O -0.16 -4.12 16.90 18.88 0.32 -3.80 16 25 O -0.18 -4.80 18.97 18.88 0.36 -4.45 16 26 C -0.06 -1.49 5.89 -19.74 -0.12 -1.61 16 27 C -0.12 -2.43 8.22 71.24 0.59 -1.84 16 28 H 0.05 1.80 6.18 -2.38 -0.01 1.79 16 29 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.03 1.20 8.09 -2.39 -0.02 1.18 16 32 H 0.04 1.75 6.69 -2.39 -0.02 1.74 16 33 H 0.26 12.54 8.31 -92.71 -0.77 11.77 16 34 H 0.06 2.42 7.72 -2.39 -0.02 2.40 16 35 H 0.04 1.42 6.66 -2.39 -0.02 1.40 16 36 H 0.07 1.92 7.68 -2.39 -0.02 1.90 16 37 H 0.42 9.52 7.05 -92.71 -0.65 8.86 16 38 H 0.15 4.54 5.80 -2.91 -0.02 4.53 16 39 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 40 H 0.17 2.47 8.03 -2.91 -0.02 2.45 16 41 H 0.11 1.81 8.11 -2.39 -0.02 1.79 16 42 H 0.09 1.53 6.73 -2.39 -0.02 1.51 16 43 H 0.07 1.44 7.06 -2.39 -0.02 1.43 16 Total: -1.00 -59.96 354.67 5.48 -54.47 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.40 Total: 20.79 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 5.22 Total: 4.64 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -2.80 Total: -92.96 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: 0.64 Total: -30.68 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -59.96 5.48 -54.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298173489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.717 kcal (2) G-P(sol) polarization free energy of solvation -59.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds