Wall clock time and date at job start Tue Mar 31 2020 13:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46491 * 120.00119 * 2 1 4 4 C 1.53007 * 109.46989 * 269.99698 * 3 2 1 5 5 C 1.50694 * 109.47280 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.00171 * 270.02305 * 5 4 3 7 7 C 1.38217 * 120.00124 * 179.97438 * 6 5 4 8 8 C 1.38258 * 119.99907 * 359.76573 * 7 6 5 9 9 C 1.38216 * 119.99766 * 0.46893 * 8 7 6 10 10 N 1.48026 * 119.99744 * 179.78745 * 9 8 7 11 11 O 1.21799 * 119.99956 * 179.72731 * 10 9 8 12 12 O 1.21802 * 120.00016 * 359.44228 * 10 9 8 13 13 C 1.38215 * 120.00134 * 89.99890 * 5 4 3 14 14 C 1.34777 * 119.99860 * 179.97438 * 2 1 3 15 15 O 1.21583 * 120.00402 * 179.97438 * 14 2 1 16 16 N 1.34778 * 120.00140 * 0.02562 * 14 2 1 17 17 C 1.46499 * 120.00083 * 179.97438 * 16 14 2 18 18 C 1.53005 * 109.47220 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.47230 * 180.02562 * 18 17 16 20 20 H 1.07992 * 119.99739 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99738 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00078 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99776 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47210 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47158 * 120.00187 * 23 21 19 26 26 H 1.48496 * 109.47663 * 240.00302 * 23 21 19 27 27 H 1.08998 * 109.46884 * 90.00604 * 1 2 3 28 28 H 1.09003 * 109.46894 * 210.00589 * 1 2 3 29 29 H 1.08997 * 109.46607 * 329.99972 * 1 2 3 30 30 H 1.09008 * 109.47301 * 150.00058 * 3 2 1 31 31 H 1.09000 * 109.47545 * 29.99704 * 3 2 1 32 32 H 1.09000 * 109.47061 * 60.00035 * 4 3 2 33 33 H 1.09000 * 109.46981 * 300.00350 * 4 3 2 34 34 H 1.08001 * 120.00180 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.99804 * 179.97438 * 7 6 5 36 36 H 1.07996 * 120.00234 * 180.24572 * 8 7 6 37 37 H 1.08005 * 119.99743 * 0.02562 * 13 5 4 38 38 H 0.97001 * 120.00145 * 0.02562 * 16 14 2 39 39 H 1.08993 * 109.47220 * 300.00022 * 17 16 14 40 40 H 1.09002 * 109.46862 * 60.00897 * 17 16 14 41 41 H 1.08999 * 109.47330 * 300.00525 * 18 17 16 42 42 H 1.09000 * 109.46826 * 60.00029 * 18 17 16 43 43 H 0.96999 * 119.99804 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 3.2056 3.0156 -1.4426 6 6 2.5138 4.2127 -1.4424 7 6 3.2044 5.4099 -1.4420 8 6 4.5870 5.4105 -1.4368 9 6 5.2785 4.2137 -1.4419 10 7 6.7588 4.2143 -1.4412 11 8 7.3682 3.1598 -1.4406 12 8 7.3674 5.2694 -1.4463 13 6 4.5877 3.0162 -1.4424 14 6 2.1389 -1.1672 0.0005 15 8 3.3547 -1.1673 0.0001 16 7 1.4650 -2.3344 0.0005 17 6 2.1975 -3.6032 0.0005 18 6 1.2032 -4.7661 0.0012 19 6 1.9567 -6.0712 0.0018 20 1 3.0366 -6.0712 0.0022 21 6 1.2673 -7.2652 0.0030 22 7 -0.0479 -7.2652 0.0030 23 14 2.2012 -8.8830 0.0030 24 1 3.6613 -8.6116 0.0023 25 1 1.8434 -9.6611 1.2162 26 1 1.8416 -9.6623 -1.2087 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3632 0.8900 0.5138 30 1 3.1500 1.1383 0.5139 31 1 1.6085 2.0284 0.5138 32 1 1.5002 1.8406 -1.9564 33 1 3.0416 0.9505 -1.9563 34 1 1.4338 4.2123 -1.4426 35 1 2.6641 6.3450 -1.4422 36 1 5.1267 6.3459 -1.4324 37 1 5.1281 2.0810 -1.4426 38 1 0.4950 -2.3345 -0.0002 39 1 2.8241 -3.6609 -0.8894 40 1 2.8240 -3.6609 0.8906 41 1 0.5768 -4.7082 0.8913 42 1 0.5763 -4.7085 -0.8886 43 1 -0.5329 -8.1052 0.0035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338062870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:13 Heat of formation + Delta-G solvation = -13.529904 kcal Electronic energy + Delta-G solvation = -25665.626096 eV Core-core repulsion = 21714.123281 eV Total energy + Delta-G solvation = -3951.502816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.41477 -40.27908 -39.71139 -36.79360 -36.16875 -34.86666 -33.86631 -32.77555 -32.28380 -30.06988 -28.94111 -26.92397 -26.71144 -25.11933 -23.75739 -23.01425 -21.82416 -21.01327 -19.71001 -19.19634 -18.84198 -17.90691 -17.74836 -17.05251 -16.57808 -16.16705 -15.99092 -15.66838 -14.97936 -14.54829 -14.30234 -14.13505 -13.99787 -13.62185 -13.50554 -13.23981 -12.82460 -12.70937 -12.58203 -12.50221 -12.29832 -11.90453 -11.77433 -11.45373 -11.35419 -11.22662 -11.15019 -11.06097 -10.62909 -10.36221 -10.05265 -9.96830 -9.71822 -9.58100 -9.27013 -8.82848 -8.50032 -8.27674 -6.11378 -4.13804 -0.49218 0.45536 1.02188 1.12395 2.71409 2.86512 3.27605 3.35388 3.40986 3.46007 3.89537 4.00492 4.21940 4.26783 4.38337 4.42792 4.45975 4.65725 4.82079 4.88308 4.92017 5.08252 5.18086 5.26047 5.29662 5.31454 5.42049 5.48106 5.52398 5.70126 5.78609 5.91173 6.15542 6.20369 6.36520 6.46884 6.74006 6.93970 7.04146 7.38497 7.52513 7.59844 7.87830 8.19875 8.31339 8.86817 8.93590 9.51207 11.00321 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019683 B = 0.002080 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.215258 B =13460.721817 C =14710.120498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.640 5.640 3 C 0.142 3.858 4 C -0.101 4.101 5 C -0.071 4.071 6 C -0.066 4.066 7 C -0.116 4.116 8 C -0.063 4.063 9 C -0.041 4.041 10 N 0.027 4.973 11 O -0.153 6.153 12 O -0.164 6.164 13 C -0.048 4.048 14 C 0.699 3.301 15 O -0.592 6.592 16 N -0.737 5.737 17 C 0.138 3.862 18 C 0.013 3.987 19 C -0.520 4.520 20 H 0.060 0.940 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.393 0.607 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 28.078 -2.682 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.379 5.379 3 C 0.017 3.983 4 C -0.140 4.140 5 C -0.073 4.073 6 C -0.084 4.084 7 C -0.135 4.135 8 C -0.082 4.082 9 C -0.124 4.124 10 N 0.546 4.454 11 O -0.371 6.371 12 O -0.379 6.379 13 C -0.067 4.067 14 C 0.400 3.600 15 O -0.471 6.471 16 N -0.391 5.391 17 C 0.015 3.985 18 C -0.024 4.024 19 C -0.558 4.558 20 H 0.079 0.921 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.725 3.275 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.175 0.825 38 H 0.228 0.772 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.236 27.905 -2.660 28.059 hybrid contribution 0.198 -0.889 -0.051 0.912 sum -1.038 27.016 -2.711 27.172 Atomic orbital electron populations 1.21735 0.79866 1.03105 1.01727 1.47026 1.06237 1.04900 1.79717 1.21198 0.98230 0.84039 0.94787 1.21132 1.00450 0.92930 0.99473 1.19874 0.92058 0.96189 0.99168 1.21589 1.01316 0.91508 0.93995 1.21205 0.92504 0.99329 1.00431 1.21073 0.94952 0.97035 0.95121 1.21151 0.79355 0.97026 1.14873 1.43661 1.03666 1.00501 0.97534 1.94595 1.68992 1.20517 1.52946 1.94524 1.69155 1.20692 1.53556 1.21117 0.94414 0.97539 0.93660 1.16028 0.85447 0.80474 0.78073 1.90897 1.11585 1.86250 1.58333 1.45704 1.10008 1.05341 1.78075 1.21621 0.95689 0.80400 1.00745 1.19327 0.94244 0.91133 0.97745 1.21086 0.93333 0.90303 1.51107 0.92128 1.24999 0.94908 0.99451 0.95000 1.69963 1.06091 1.26761 1.50560 0.86452 0.80219 0.83278 0.77601 1.19533 1.20948 1.20939 0.92724 0.91029 0.91100 0.89565 0.90629 0.89905 0.89335 0.83907 0.83515 0.83075 0.82529 0.77176 0.92691 0.92718 0.96024 0.96011 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.25 59.85 0.61 1.25 16 2 N -0.64 -7.48 2.87 -187.35 -0.54 -8.02 16 3 C 0.14 1.32 5.43 -4.04 -0.02 1.30 16 4 C -0.10 -0.81 5.67 -27.88 -0.16 -0.97 16 5 C -0.07 -0.51 5.13 -104.63 -0.54 -1.05 16 6 C -0.07 -0.31 9.70 -39.58 -0.38 -0.70 16 7 C -0.12 -0.52 10.05 -39.58 -0.40 -0.92 16 8 C -0.06 -0.43 9.56 -39.58 -0.38 -0.80 16 9 C -0.04 -0.40 6.85 -79.95 -0.55 -0.95 16 10 N 0.03 0.33 4.45 33.96 0.15 0.48 16 11 O -0.15 -2.16 18.45 -29.46 -0.54 -2.70 16 12 O -0.16 -2.08 18.45 -29.46 -0.54 -2.63 16 13 C -0.05 -0.45 9.21 -39.58 -0.36 -0.81 16 14 C 0.70 11.74 8.28 -86.92 -0.72 11.02 16 15 O -0.59 -12.20 15.92 5.29 0.08 -12.12 16 16 N -0.74 -12.73 5.42 -65.23 -0.35 -13.09 16 17 C 0.14 2.93 5.61 -4.04 -0.02 2.91 16 18 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 19 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 20 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 23 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.61 6.36 -51.93 -0.33 0.28 16 29 H 0.07 0.39 7.89 -51.93 -0.41 -0.02 16 30 H 0.09 1.01 7.42 -51.92 -0.39 0.63 16 31 H 0.08 0.49 7.89 -51.93 -0.41 0.08 16 32 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.14 0.31 8.06 -52.49 -0.42 -0.12 16 35 H 0.15 0.23 8.06 -52.49 -0.42 -0.19 16 36 H 0.15 0.83 7.61 -52.49 -0.40 0.43 16 37 H 0.16 1.62 7.61 -52.48 -0.40 1.22 16 38 H 0.39 5.85 6.20 -40.82 -0.25 5.60 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -34.28 375.15 -9.77 -44.05 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.93 Total: -0.12 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -3.47 Total: -2.65 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.00 Total: -45.76 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -1.00 Total: -17.45 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.28 -9.77 -44.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338062870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.522 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds