Wall clock time and date at job start Tue Mar 31 2020 13:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46491 * 120.00119 * 2 1 4 4 C 1.53007 * 109.46989 * 269.99698 * 3 2 1 5 5 C 1.50694 * 109.47280 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.00171 * 270.02305 * 5 4 3 7 7 C 1.38217 * 120.00124 * 179.97438 * 6 5 4 8 8 C 1.38258 * 119.99907 * 359.76573 * 7 6 5 9 9 C 1.38216 * 119.99766 * 0.46893 * 8 7 6 10 10 N 1.48026 * 119.99744 * 179.78745 * 9 8 7 11 11 O 1.21799 * 119.99956 * 179.72731 * 10 9 8 12 12 O 1.21802 * 120.00016 * 359.44228 * 10 9 8 13 13 C 1.38215 * 120.00134 * 89.99890 * 5 4 3 14 14 C 1.34777 * 119.99860 * 179.97438 * 2 1 3 15 15 O 1.21583 * 120.00402 * 179.97438 * 14 2 1 16 16 N 1.34778 * 120.00140 * 0.02562 * 14 2 1 17 17 C 1.46499 * 120.00083 * 179.97438 * 16 14 2 18 18 C 1.53005 * 109.47220 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.47230 * 180.02562 * 18 17 16 20 20 H 1.07992 * 119.99739 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99738 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00078 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99776 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47210 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47158 * 120.00187 * 23 21 19 26 26 H 1.48496 * 109.47663 * 240.00302 * 23 21 19 27 27 H 1.08998 * 109.46884 * 90.00604 * 1 2 3 28 28 H 1.09003 * 109.46894 * 210.00589 * 1 2 3 29 29 H 1.08997 * 109.46607 * 329.99972 * 1 2 3 30 30 H 1.09008 * 109.47301 * 150.00058 * 3 2 1 31 31 H 1.09000 * 109.47545 * 29.99704 * 3 2 1 32 32 H 1.09000 * 109.47061 * 60.00035 * 4 3 2 33 33 H 1.09000 * 109.46981 * 300.00350 * 4 3 2 34 34 H 1.08001 * 120.00180 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.99804 * 179.97438 * 7 6 5 36 36 H 1.07996 * 120.00234 * 180.24572 * 8 7 6 37 37 H 1.08005 * 119.99743 * 0.02562 * 13 5 4 38 38 H 0.97001 * 120.00145 * 0.02562 * 16 14 2 39 39 H 1.08993 * 109.47220 * 300.00022 * 17 16 14 40 40 H 1.09002 * 109.46862 * 60.00897 * 17 16 14 41 41 H 1.08999 * 109.47330 * 300.00525 * 18 17 16 42 42 H 1.09000 * 109.46826 * 60.00029 * 18 17 16 43 43 H 0.96999 * 119.99804 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 3.2056 3.0156 -1.4426 6 6 2.5138 4.2127 -1.4424 7 6 3.2044 5.4099 -1.4420 8 6 4.5870 5.4105 -1.4368 9 6 5.2785 4.2137 -1.4419 10 7 6.7588 4.2143 -1.4412 11 8 7.3682 3.1598 -1.4406 12 8 7.3674 5.2694 -1.4463 13 6 4.5877 3.0162 -1.4424 14 6 2.1389 -1.1672 0.0005 15 8 3.3547 -1.1673 0.0001 16 7 1.4650 -2.3344 0.0005 17 6 2.1975 -3.6032 0.0005 18 6 1.2032 -4.7661 0.0012 19 6 1.9567 -6.0712 0.0018 20 1 3.0366 -6.0712 0.0022 21 6 1.2673 -7.2652 0.0030 22 7 -0.0479 -7.2652 0.0030 23 14 2.2012 -8.8830 0.0030 24 1 3.6613 -8.6116 0.0023 25 1 1.8434 -9.6611 1.2162 26 1 1.8416 -9.6623 -1.2087 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3632 0.8900 0.5138 30 1 3.1500 1.1383 0.5139 31 1 1.6085 2.0284 0.5138 32 1 1.5002 1.8406 -1.9564 33 1 3.0416 0.9505 -1.9563 34 1 1.4338 4.2123 -1.4426 35 1 2.6641 6.3450 -1.4422 36 1 5.1267 6.3459 -1.4324 37 1 5.1281 2.0810 -1.4426 38 1 0.4950 -2.3345 -0.0002 39 1 2.8241 -3.6609 -0.8894 40 1 2.8240 -3.6609 0.8906 41 1 0.5768 -4.7082 0.8913 42 1 0.5763 -4.7085 -0.8886 43 1 -0.5329 -8.1052 0.0035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338062870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:13 Heat of formation + Delta-G solvation = -34.393783 kcal Electronic energy + Delta-G solvation = -25666.530822 eV Core-core repulsion = 21714.123281 eV Total energy + Delta-G solvation = -3952.407541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.30363 -41.30368 -40.53335 -37.74888 -37.27208 -36.47011 -35.02757 -34.33440 -32.85475 -31.59592 -29.96691 -27.74596 -27.56250 -26.72370 -24.87543 -23.63820 -22.93264 -22.45995 -20.99304 -19.95227 -19.74436 -19.07770 -18.66265 -18.49540 -17.53914 -17.38873 -16.86359 -16.65879 -16.48782 -15.75930 -15.42191 -15.25896 -15.08939 -14.49000 -14.37673 -14.21044 -14.14674 -13.96480 -13.40897 -13.21693 -13.18494 -13.04160 -12.95624 -12.81012 -12.52748 -12.41701 -12.38794 -12.35054 -12.25823 -11.91097 -11.67421 -11.47067 -11.16345 -10.61559 -10.57691 -10.33861 -10.11208 -9.47623 -8.25200 -6.34958 -1.28526 -0.06698 0.27920 0.35723 1.40222 1.41445 1.54257 1.68237 2.11740 2.30770 2.40231 3.04788 3.09625 3.33951 3.47762 3.74874 3.90895 3.96267 4.01448 4.15000 4.25278 4.30963 4.44632 4.49755 4.51844 4.61983 4.70857 4.71086 4.84700 4.87044 4.93887 5.01420 5.07191 5.10633 5.25905 5.30264 5.50143 5.54385 5.58058 5.58906 5.78046 5.91234 6.16537 6.38960 6.77911 6.99057 7.34268 7.56175 8.86821 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019683 B = 0.002080 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.215258 B =13460.721817 C =14710.120498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.629 5.629 3 C 0.138 3.862 4 C -0.091 4.091 5 C -0.075 4.075 6 C -0.041 4.041 7 C -0.099 4.099 8 C -0.060 4.060 9 C -0.065 4.065 10 N 0.029 4.971 11 O -0.221 6.221 12 O -0.153 6.153 13 C -0.070 4.070 14 C 0.693 3.307 15 O -0.640 6.640 16 N -0.733 5.733 17 C 0.159 3.841 18 C 0.026 3.974 19 C -0.546 4.546 20 H 0.056 0.944 21 C 0.008 3.992 22 N -0.925 5.925 23 Si 0.964 3.036 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.276 1.276 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.050 0.950 34 H 0.188 0.812 35 H 0.192 0.808 36 H 0.166 0.834 37 H 0.126 0.874 38 H 0.406 0.594 39 H 0.041 0.959 40 H 0.040 0.960 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 30.836 -2.758 31.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.366 5.366 3 C 0.015 3.985 4 C -0.130 4.130 5 C -0.077 4.077 6 C -0.059 4.059 7 C -0.117 4.117 8 C -0.079 4.079 9 C -0.148 4.148 10 N 0.542 4.458 11 O -0.424 6.424 12 O -0.375 6.375 13 C -0.089 4.089 14 C 0.394 3.606 15 O -0.522 6.522 16 N -0.389 5.389 17 C 0.035 3.965 18 C -0.012 4.012 19 C -0.584 4.584 20 H 0.075 0.925 21 C -0.191 4.191 22 N -0.564 5.564 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.201 1.201 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.128 0.872 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.068 0.932 34 H 0.205 0.795 35 H 0.209 0.791 36 H 0.183 0.817 37 H 0.144 0.856 38 H 0.244 0.756 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.330 30.602 -2.738 31.028 hybrid contribution 1.002 -1.539 -0.026 1.836 sum -3.327 29.064 -2.763 29.384 Atomic orbital electron populations 1.22063 0.76953 1.04715 1.03361 1.47080 1.07976 1.03719 1.77843 1.21431 0.97405 0.83781 0.95922 1.20995 1.01278 0.92362 0.98325 1.19846 0.90744 0.97141 0.99953 1.22077 1.03331 0.89970 0.90530 1.21743 0.91148 1.01068 0.97784 1.21473 0.96312 0.96101 0.94012 1.21355 0.77106 0.98513 1.17859 1.44121 1.05147 0.99899 0.96614 1.94596 1.70282 1.21037 1.56497 1.94459 1.70303 1.20547 1.52232 1.21037 0.95746 0.96505 0.95630 1.16237 0.84978 0.81565 0.77849 1.90870 1.13886 1.87106 1.60291 1.45371 1.10471 1.04460 1.78625 1.21059 0.94680 0.81404 0.99378 1.19113 0.94157 0.91525 0.96392 1.21477 0.93528 0.91970 1.51455 0.92540 1.25842 0.95833 1.02981 0.94437 1.70052 1.07400 1.27931 1.51033 0.85411 0.78899 0.78866 0.77961 1.19220 1.20140 1.20122 0.91021 0.91797 0.87182 0.92991 0.86046 0.86749 0.93152 0.79496 0.79066 0.81677 0.85637 0.75618 0.94076 0.94147 0.97223 0.97178 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 10.25 127.77 1.31 2.20 16 2 N -0.63 -13.74 2.87 -864.90 -2.48 -16.23 16 3 C 0.14 2.33 5.43 86.38 0.47 2.80 16 4 C -0.09 -1.31 5.67 29.85 0.17 -1.14 16 5 C -0.08 -0.94 5.13 -19.87 -0.10 -1.05 16 6 C -0.04 -0.17 9.70 22.27 0.22 0.04 16 7 C -0.10 -0.36 10.05 22.27 0.22 -0.13 16 8 C -0.06 -0.66 9.56 22.27 0.21 -0.44 16 9 C -0.07 -1.29 6.85 36.37 0.25 -1.04 16 10 N 0.03 0.79 4.45 -46.46 -0.21 0.58 16 11 O -0.22 -7.16 18.45 18.89 0.35 -6.81 16 12 O -0.15 -4.02 18.45 18.88 0.35 -3.67 16 13 C -0.07 -1.39 9.21 22.27 0.21 -1.18 16 14 C 0.69 23.72 8.28 179.05 1.48 25.21 16 15 O -0.64 -27.91 15.92 -3.98 -0.06 -27.97 16 16 N -0.73 -25.80 5.42 -478.54 -2.59 -28.40 16 17 C 0.16 7.03 5.61 86.38 0.48 7.52 16 18 C 0.03 1.29 5.09 29.85 0.15 1.45 16 19 C -0.55 -30.71 9.11 25.60 0.23 -30.48 16 20 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 21 C 0.01 0.44 5.46 84.65 0.46 0.91 16 22 N -0.92 -53.75 13.29 21.45 0.28 -53.47 16 23 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.93 6.36 -2.39 -0.02 0.92 16 29 H 0.11 0.58 7.89 -2.39 -0.02 0.57 16 30 H 0.05 1.26 7.42 -2.38 -0.02 1.25 16 31 H 0.12 0.97 7.89 -2.39 -0.02 0.96 16 32 H 0.11 0.93 8.08 -2.39 -0.02 0.91 16 33 H 0.05 1.13 8.09 -2.39 -0.02 1.11 16 34 H 0.19 -0.74 8.06 -2.91 -0.02 -0.77 16 35 H 0.19 -0.87 8.06 -2.91 -0.02 -0.89 16 36 H 0.17 1.33 7.61 -2.91 -0.02 1.31 16 37 H 0.13 3.18 7.61 -2.91 -0.02 3.16 16 38 H 0.41 11.99 6.20 -92.71 -0.58 11.42 16 39 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -81.26 375.15 3.88 -77.38 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.46 Total: 8.07 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.77 Total: 4.66 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -5.00 Total: -97.51 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: 0.63 Total: -38.46 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -81.26 3.88 -77.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338062870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.986 kcal (2) G-P(sol) polarization free energy of solvation -81.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds