Wall clock time and date at job start Tue Mar 31 2020 13:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35983 * 116.99896 * 2 1 4 4 C 1.38472 * 120.04275 * 0.02562 * 3 2 1 5 5 C 1.38827 * 119.94605 * 179.97438 * 4 3 2 6 6 N 1.40075 * 119.98785 * 180.02562 * 5 4 3 7 7 C 1.34768 * 120.00607 * 215.11974 * 6 5 4 8 8 C 1.50698 * 120.00249 * 175.45858 * 7 6 5 9 9 O 1.21294 * 120.00191 * 355.46061 * 7 6 5 10 10 C 1.38870 * 120.03456 * 0.02562 * 5 4 3 11 11 C 1.38148 * 120.08815 * 359.70223 * 10 5 4 12 12 C 1.38702 * 120.05252 * 0.55315 * 11 10 5 13 13 N 1.40330 * 120.01581 * 179.74888 * 12 11 10 14 14 C 1.34772 * 120.00235 * 34.70121 * 13 12 11 15 15 O 1.21597 * 120.00388 * 355.46476 * 14 13 12 16 16 N 1.34777 * 120.00032 * 175.18002 * 14 13 12 17 17 C 1.46508 * 119.99993 * 180.27447 * 16 14 13 18 18 C 1.53005 * 109.46826 * 180.02562 * 17 16 14 19 19 C 1.50698 * 109.46701 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00461 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99796 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00379 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47131 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47194 * 120.00439 * 23 21 19 26 26 H 1.48503 * 109.47021 * 240.00170 * 23 21 19 27 27 H 1.09003 * 109.47155 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47818 * 300.00286 * 1 2 3 29 29 H 1.09003 * 109.47224 * 60.00684 * 1 2 3 30 30 H 1.07993 * 120.02824 * 359.95956 * 4 3 2 31 31 H 0.97006 * 119.99561 * 35.11909 * 6 5 4 32 32 H 1.09002 * 109.47164 * 90.00189 * 8 7 6 33 33 H 1.09007 * 109.46949 * 210.00142 * 8 7 6 34 34 H 1.08997 * 109.47061 * 330.00019 * 8 7 6 35 35 H 1.07999 * 119.95492 * 180.02562 * 10 5 4 36 36 H 1.08007 * 119.97078 * 180.28002 * 11 10 5 37 37 H 0.97006 * 120.00099 * 214.71188 * 13 12 11 38 38 H 0.96997 * 119.99949 * 0.28715 * 16 14 13 39 39 H 1.08994 * 109.47088 * 300.00365 * 17 16 14 40 40 H 1.08996 * 109.46657 * 60.01026 * 17 16 14 41 41 H 1.08997 * 109.46952 * 300.00169 * 18 17 16 42 42 H 1.08996 * 109.46825 * 60.00932 * 18 17 16 43 43 H 0.97003 * 120.00341 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2929 2.3735 0.0005 5 6 1.9253 3.6094 0.0011 6 7 1.1641 4.7853 0.0022 7 6 1.5989 5.8702 -0.6687 8 6 0.7333 7.1009 -0.7532 9 8 2.6870 5.8562 -1.2046 10 6 3.3121 3.6806 0.0005 11 6 4.0651 2.5224 0.0057 12 6 3.4372 1.2856 -0.0002 13 7 4.2028 0.1096 -0.0003 14 6 5.3719 0.0666 0.6688 15 8 5.8039 1.0697 1.2034 16 7 6.0596 -1.0897 0.7502 17 6 7.3275 -1.1379 1.4826 18 6 7.8983 -2.5562 1.4212 19 6 9.2022 -2.6059 2.1751 20 1 9.5853 -1.7152 2.6508 21 6 9.9061 -3.7886 2.2576 22 7 9.4400 -4.8731 1.6780 23 14 11.5220 -3.8504 3.1928 24 1 11.8238 -2.5070 3.7490 25 1 11.4150 -4.8322 4.3017 26 1 12.6117 -4.2614 2.2713 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 0.2144 2.3183 0.0003 31 1 0.3239 4.8186 0.4858 32 1 0.9535 7.7584 0.0878 33 1 0.9370 7.6249 -1.6871 34 1 -0.3165 6.8096 -0.7215 35 1 3.8027 4.6427 0.0014 36 1 5.1436 2.5800 0.0098 37 1 3.8906 -0.6724 -0.4821 38 1 5.7151 -1.8899 0.3237 39 1 8.0347 -0.4422 1.0310 40 1 7.1572 -0.8592 2.5224 41 1 7.1912 -3.2522 1.8726 42 1 8.0687 -2.8346 0.3813 43 1 9.9350 -5.7053 1.7364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345093888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:55 Heat of formation + Delta-G solvation = -74.496280 kcal Electronic energy + Delta-G solvation = -25975.563834 eV Core-core repulsion = 22021.417318 eV Total energy + Delta-G solvation = -3954.146516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.06144 -40.10668 -39.29504 -37.39636 -35.60549 -34.65726 -33.79302 -32.78494 -30.77808 -30.30103 -29.60784 -28.42843 -26.98616 -24.74423 -22.90860 -22.86976 -21.01963 -20.77584 -20.52638 -18.83466 -18.05034 -17.47132 -17.41137 -16.40091 -16.30087 -15.98785 -15.70407 -15.59805 -15.11143 -14.65676 -14.49650 -14.29209 -14.06645 -13.78900 -13.56523 -13.27292 -13.24456 -12.91865 -12.74464 -12.53627 -12.27268 -11.98494 -11.71500 -11.42959 -11.16635 -11.05864 -10.76189 -10.59926 -10.31795 -10.21337 -9.89227 -9.57674 -9.48186 -9.22540 -8.65421 -8.52482 -8.34093 -7.56203 -6.07452 -4.09941 1.09342 1.34517 2.25407 2.71524 2.88930 3.10442 3.30287 3.37895 3.41693 3.43541 3.81536 4.33152 4.40236 4.59787 4.65007 4.71238 4.76900 4.87506 4.91084 5.08693 5.12183 5.20499 5.28143 5.29800 5.44486 5.57178 5.75509 6.05520 6.15209 6.31719 6.40624 6.42692 6.61232 6.77375 6.78990 6.96739 7.06391 7.17747 7.27913 7.58106 7.64923 7.77525 7.91755 8.25228 8.37787 8.89706 8.97140 9.54793 11.04223 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.002199 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.917061 B =12727.587232 C =13831.128739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.112 3.888 4 C -0.215 4.215 5 C 0.152 3.848 6 N -0.672 5.672 7 C 0.507 3.493 8 C -0.171 4.171 9 O -0.522 6.522 10 C -0.133 4.133 11 C -0.068 4.068 12 C 0.138 3.862 13 N -0.683 5.683 14 C 0.698 3.302 15 O -0.583 6.583 16 N -0.732 5.732 17 C 0.139 3.861 18 C 0.012 3.988 19 C -0.519 4.519 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.897 3.103 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.283 1.283 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.132 0.868 31 H 0.409 0.591 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.142 0.858 36 H 0.155 0.845 37 H 0.408 0.592 38 H 0.395 0.605 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.921 17.217 -5.712 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.227 6.227 3 C 0.064 3.936 4 C -0.237 4.237 5 C 0.057 3.943 6 N -0.318 5.318 7 C 0.295 3.705 8 C -0.230 4.230 9 O -0.397 6.397 10 C -0.153 4.153 11 C -0.089 4.089 12 C 0.042 3.958 13 N -0.332 5.332 14 C 0.399 3.601 15 O -0.461 6.461 16 N -0.385 5.385 17 C 0.017 3.983 18 C -0.026 4.026 19 C -0.558 4.558 20 H 0.079 0.921 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.150 0.850 31 H 0.245 0.755 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.159 0.841 36 H 0.172 0.828 37 H 0.243 0.757 38 H 0.229 0.771 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.551 17.734 -5.618 30.802 hybrid contribution -0.292 -0.885 0.326 0.987 sum -24.843 16.849 -5.291 30.481 Atomic orbital electron populations 1.23028 0.78434 1.03957 1.01113 1.86074 1.21292 1.26159 1.89170 1.18407 0.90237 0.84418 1.00519 1.20571 0.99560 0.90474 1.13080 1.17396 0.90789 0.84773 1.01294 1.43584 1.25076 1.11188 1.51992 1.21007 0.87541 0.84535 0.77373 1.21889 0.99819 0.95546 1.05754 1.90770 1.21574 1.82162 1.45171 1.21103 0.91643 0.99580 1.03000 1.21219 1.01907 0.89111 0.96671 1.16881 0.86169 0.86902 1.05872 1.42510 1.21708 1.14311 1.54637 1.16041 0.79990 0.84752 0.79353 1.90879 1.69515 1.33805 1.51916 1.45551 1.25310 1.09666 1.57983 1.21652 0.80890 1.01222 0.94555 1.19341 0.96134 0.89084 0.98006 1.21086 1.05361 0.95893 1.33480 0.92123 1.25001 0.98127 0.95605 0.95643 1.69966 1.39020 1.00337 1.43999 0.86452 0.83309 0.78198 0.79580 1.19555 1.20977 1.20957 0.88207 0.92750 0.92802 0.85016 0.75539 0.88481 0.88452 0.90003 0.84073 0.82753 0.75704 0.77143 0.92535 0.92573 0.95901 0.95880 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.41 10.05 -19.69 -0.20 -3.60 16 3 C 0.11 1.37 6.70 -39.11 -0.26 1.11 16 4 C -0.22 -2.17 8.95 -39.28 -0.35 -2.52 16 5 C 0.15 1.69 6.30 -83.64 -0.53 1.17 16 6 N -0.67 -5.13 5.34 -9.84 -0.05 -5.18 16 7 C 0.51 4.41 7.78 -10.99 -0.09 4.32 16 8 C -0.17 -0.65 10.31 36.00 0.37 -0.28 16 9 O -0.52 -7.07 14.54 5.54 0.08 -6.99 16 10 C -0.13 -1.84 8.69 -39.38 -0.34 -2.18 16 11 C -0.07 -1.05 8.69 -39.44 -0.34 -1.39 16 12 C 0.14 2.03 6.33 -83.40 -0.53 1.50 16 13 N -0.68 -10.09 5.20 -14.06 -0.07 -10.16 16 14 C 0.70 12.74 8.41 -86.92 -0.73 12.00 16 15 O -0.58 -12.51 13.76 5.28 0.07 -12.44 16 16 N -0.73 -13.24 5.56 -65.22 -0.36 -13.60 16 17 C 0.14 3.02 5.61 -4.04 -0.02 3.00 16 18 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 19 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 20 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 23 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 29 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.13 0.90 6.29 -52.49 -0.33 0.57 16 31 H 0.41 1.53 8.82 -40.82 -0.36 1.17 16 32 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 35 H 0.14 2.06 6.22 -52.49 -0.33 1.73 16 36 H 0.16 2.67 6.19 -52.48 -0.32 2.35 16 37 H 0.41 4.95 8.59 -40.82 -0.35 4.60 16 38 H 0.40 6.15 8.49 -40.82 -0.35 5.81 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -36.22 366.95 -7.43 -43.65 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.76 Total: 7.02 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -2.38 Total: 4.77 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.25 Total: -54.49 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.04 Total: -23.04 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.22 -7.43 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345093888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.850 kcal (2) G-P(sol) polarization free energy of solvation -36.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds