Wall clock time and date at job start Tue Mar 31 2020 13:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35983 * 116.99896 * 2 1 4 4 C 1.38472 * 120.04275 * 0.02562 * 3 2 1 5 5 C 1.38827 * 119.94605 * 179.97438 * 4 3 2 6 6 N 1.40075 * 119.98785 * 180.02562 * 5 4 3 7 7 C 1.34768 * 120.00607 * 215.11974 * 6 5 4 8 8 C 1.50698 * 120.00249 * 175.45858 * 7 6 5 9 9 O 1.21294 * 120.00191 * 355.46061 * 7 6 5 10 10 C 1.38870 * 120.03456 * 0.02562 * 5 4 3 11 11 C 1.38148 * 120.08815 * 359.70223 * 10 5 4 12 12 C 1.38702 * 120.05252 * 0.55315 * 11 10 5 13 13 N 1.40330 * 120.01581 * 179.74888 * 12 11 10 14 14 C 1.34772 * 120.00235 * 34.70121 * 13 12 11 15 15 O 1.21597 * 120.00388 * 355.46476 * 14 13 12 16 16 N 1.34777 * 120.00032 * 175.18002 * 14 13 12 17 17 C 1.46508 * 119.99993 * 180.27447 * 16 14 13 18 18 C 1.53005 * 109.46826 * 180.02562 * 17 16 14 19 19 C 1.50698 * 109.46701 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00461 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99796 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00379 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47131 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47194 * 120.00439 * 23 21 19 26 26 H 1.48503 * 109.47021 * 240.00170 * 23 21 19 27 27 H 1.09003 * 109.47155 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47818 * 300.00286 * 1 2 3 29 29 H 1.09003 * 109.47224 * 60.00684 * 1 2 3 30 30 H 1.07993 * 120.02824 * 359.95956 * 4 3 2 31 31 H 0.97006 * 119.99561 * 35.11909 * 6 5 4 32 32 H 1.09002 * 109.47164 * 90.00189 * 8 7 6 33 33 H 1.09007 * 109.46949 * 210.00142 * 8 7 6 34 34 H 1.08997 * 109.47061 * 330.00019 * 8 7 6 35 35 H 1.07999 * 119.95492 * 180.02562 * 10 5 4 36 36 H 1.08007 * 119.97078 * 180.28002 * 11 10 5 37 37 H 0.97006 * 120.00099 * 214.71188 * 13 12 11 38 38 H 0.96997 * 119.99949 * 0.28715 * 16 14 13 39 39 H 1.08994 * 109.47088 * 300.00365 * 17 16 14 40 40 H 1.08996 * 109.46657 * 60.01026 * 17 16 14 41 41 H 1.08997 * 109.46952 * 300.00169 * 18 17 16 42 42 H 1.08996 * 109.46825 * 60.00932 * 18 17 16 43 43 H 0.97003 * 120.00341 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2929 2.3735 0.0005 5 6 1.9253 3.6094 0.0011 6 7 1.1641 4.7853 0.0022 7 6 1.5989 5.8702 -0.6687 8 6 0.7333 7.1009 -0.7532 9 8 2.6870 5.8562 -1.2046 10 6 3.3121 3.6806 0.0005 11 6 4.0651 2.5224 0.0057 12 6 3.4372 1.2856 -0.0002 13 7 4.2028 0.1096 -0.0003 14 6 5.3719 0.0666 0.6688 15 8 5.8039 1.0697 1.2034 16 7 6.0596 -1.0897 0.7502 17 6 7.3275 -1.1379 1.4826 18 6 7.8983 -2.5562 1.4212 19 6 9.2022 -2.6059 2.1751 20 1 9.5853 -1.7152 2.6508 21 6 9.9061 -3.7886 2.2576 22 7 9.4400 -4.8731 1.6780 23 14 11.5220 -3.8504 3.1928 24 1 11.8238 -2.5070 3.7490 25 1 11.4150 -4.8322 4.3017 26 1 12.6117 -4.2614 2.2713 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 0.2144 2.3183 0.0003 31 1 0.3239 4.8186 0.4858 32 1 0.9535 7.7584 0.0878 33 1 0.9370 7.6249 -1.6871 34 1 -0.3165 6.8096 -0.7215 35 1 3.8027 4.6427 0.0014 36 1 5.1436 2.5800 0.0098 37 1 3.8906 -0.6724 -0.4821 38 1 5.7151 -1.8899 0.3237 39 1 8.0347 -0.4422 1.0310 40 1 7.1572 -0.8592 2.5224 41 1 7.1912 -3.2522 1.8726 42 1 8.0687 -2.8346 0.3813 43 1 9.9350 -5.7053 1.7364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345093888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:54 Heat of formation + Delta-G solvation = -102.464508 kcal Electronic energy + Delta-G solvation = -25976.776627 eV Core-core repulsion = 22021.417318 eV Total energy + Delta-G solvation = -3955.359310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.05210 -41.14719 -40.33828 -38.32193 -36.91492 -36.16048 -35.02792 -34.60834 -31.84180 -31.23814 -30.96640 -29.24448 -27.79533 -26.62313 -24.06892 -23.80764 -22.81175 -21.92918 -21.55462 -19.89408 -19.19308 -18.61918 -18.40994 -18.17312 -17.14422 -16.92325 -16.61478 -16.51481 -16.42273 -16.33354 -16.06767 -15.31734 -15.19031 -15.01776 -14.86174 -14.41193 -14.28094 -13.92955 -13.87609 -13.29900 -13.21282 -13.04620 -12.96512 -12.85327 -12.51408 -12.38626 -12.29164 -12.19893 -11.74484 -11.66636 -11.48268 -11.22256 -10.96160 -10.61139 -10.54064 -10.04380 -9.56654 -8.59705 -8.23935 -6.34021 0.10572 0.35844 1.41278 1.41797 1.52999 1.55620 1.61008 2.02279 2.08495 2.31582 2.41410 2.75259 3.10863 3.23440 3.76959 3.86833 4.10528 4.14739 4.34725 4.38673 4.47371 4.49993 4.51085 4.51334 4.64275 4.68477 4.74698 4.82133 4.86139 5.11720 5.14413 5.17560 5.25603 5.43935 5.50237 5.54025 5.59186 5.78090 5.79835 5.95064 6.16738 6.37656 6.46158 6.79092 6.99121 7.15958 7.35054 7.47385 8.88176 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.002199 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.917061 B =12727.587232 C =13831.128739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.123 3.877 4 C -0.201 4.201 5 C 0.162 3.838 6 N -0.657 5.657 7 C 0.501 3.499 8 C -0.160 4.160 9 O -0.578 6.578 10 C -0.153 4.153 11 C -0.085 4.085 12 C 0.105 3.895 13 N -0.667 5.667 14 C 0.698 3.302 15 O -0.619 6.619 16 N -0.726 5.726 17 C 0.160 3.840 18 C 0.023 3.977 19 C -0.545 4.545 20 H 0.059 0.941 21 C 0.006 3.994 22 N -0.926 5.926 23 Si 0.966 3.034 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.277 1.277 27 H 0.116 0.884 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.176 0.824 31 H 0.432 0.568 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.420 0.580 38 H 0.408 0.592 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.044 17.806 -5.425 34.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.074 3.926 4 C -0.222 4.222 5 C 0.066 3.934 6 N -0.305 5.305 7 C 0.291 3.709 8 C -0.219 4.219 9 O -0.457 6.457 10 C -0.174 4.174 11 C -0.107 4.107 12 C 0.009 3.991 13 N -0.316 5.316 14 C 0.399 3.601 15 O -0.499 6.499 16 N -0.380 5.380 17 C 0.036 3.964 18 C -0.014 4.014 19 C -0.583 4.583 20 H 0.077 0.923 21 C -0.193 4.193 22 N -0.566 5.566 23 Si 0.791 3.209 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.202 1.202 27 H 0.135 0.865 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.193 0.807 31 H 0.272 0.728 32 H 0.132 0.868 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.258 0.742 38 H 0.244 0.756 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -27.781 18.320 -5.341 33.703 hybrid contribution 0.504 -1.028 0.197 1.161 sum -27.276 17.293 -5.145 32.703 Atomic orbital electron populations 1.23414 0.75835 1.05775 1.02695 1.86072 1.23938 1.25362 1.88741 1.18408 0.89323 0.85813 0.99047 1.20915 1.01442 0.88899 1.10932 1.17483 0.90000 0.86681 0.99239 1.43567 1.25394 1.09833 1.51717 1.22022 0.87213 0.85632 0.75990 1.21924 1.00649 0.93002 1.06286 1.90762 1.24281 1.83149 1.47513 1.20999 0.93321 0.98246 1.04804 1.20969 1.00669 0.90530 0.98501 1.17028 0.87528 0.86123 1.08425 1.42220 1.20471 1.15082 1.53799 1.16101 0.80736 0.83955 0.79347 1.90862 1.70620 1.34961 1.53501 1.45216 1.24377 1.10477 1.57973 1.21140 0.82104 0.98796 0.94334 1.19142 0.95200 0.90508 0.96592 1.21483 1.06687 0.96144 1.34025 0.92271 1.25877 1.01746 0.95172 0.96474 1.70064 1.40558 1.00927 1.45019 0.85380 0.78821 0.78417 0.78322 1.19014 1.20173 1.20231 0.86541 0.91211 0.90989 0.80686 0.72794 0.86829 0.88685 0.86429 0.85721 0.85926 0.74194 0.75582 0.93545 0.93572 0.97164 0.97180 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -6.30 10.05 -93.36 -0.94 -7.24 16 3 C 0.12 2.80 6.70 22.58 0.15 2.95 16 4 C -0.20 -3.46 8.95 22.47 0.20 -3.26 16 5 C 0.16 3.38 6.30 38.12 0.24 3.62 16 6 N -0.66 -8.37 5.34 -303.43 -1.62 -9.99 16 7 C 0.50 7.97 7.78 87.66 0.68 8.65 16 8 C -0.16 -0.72 10.31 71.24 0.73 0.01 16 9 O -0.58 -16.05 14.54 -3.07 -0.04 -16.10 16 10 C -0.15 -4.45 8.69 22.40 0.19 -4.26 16 11 C -0.09 -2.83 8.69 22.36 0.19 -2.64 16 12 C 0.10 3.14 6.33 38.14 0.24 3.38 16 13 N -0.67 -20.14 5.20 -316.67 -1.65 -21.79 16 14 C 0.70 26.46 8.41 179.06 1.51 27.97 16 15 O -0.62 -28.08 13.76 -4.02 -0.06 -28.13 16 16 N -0.73 -27.04 5.56 -478.51 -2.66 -29.70 16 17 C 0.16 7.19 5.61 86.38 0.48 7.68 16 18 C 0.02 1.19 5.09 29.85 0.15 1.34 16 19 C -0.54 -30.99 9.11 25.60 0.23 -30.76 16 20 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 21 C 0.01 0.34 5.46 84.65 0.46 0.80 16 22 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16 23 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 29 H 0.07 0.41 7.66 -2.39 -0.02 0.40 16 30 H 0.18 1.44 6.29 -2.91 -0.02 1.42 16 31 H 0.43 1.43 8.82 -92.70 -0.82 0.61 16 32 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.12 3.99 6.22 -2.91 -0.02 3.97 16 36 H 0.12 4.76 6.19 -2.91 -0.02 4.74 16 37 H 0.42 10.18 8.59 -92.70 -0.80 9.39 16 38 H 0.41 12.93 8.49 -92.71 -0.79 12.14 16 39 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -82.64 366.95 0.61 -82.03 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -1.32 Total: 22.36 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 6.59 Total: 16.75 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -5.64 Total: -116.04 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -1.04 Total: -51.47 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -82.64 0.61 -82.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345093888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.435 kcal (2) G-P(sol) polarization free energy of solvation -82.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds